Wall clock time and date at job start Wed Apr 1 2020 04:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47168 * 2 1 4 4 O 1.45203 * 109.47038 * 239.99805 * 2 1 3 5 5 C 1.34752 * 116.99564 * 90.00585 * 4 2 1 6 6 O 1.21512 * 120.00590 * 359.97438 * 5 4 2 7 7 C 1.47399 * 119.99675 * 180.02562 * 5 4 2 8 8 C 1.39597 * 120.24793 * 0.02562 * 7 5 4 9 9 C 1.38175 * 120.25472 * 179.97438 * 8 7 5 10 10 C 1.37981 * 120.72063 * 0.02562 * 9 8 7 11 11 C 1.39611 * 120.12270 * 0.02562 * 10 9 8 12 12 N 1.35981 * 133.38733 * 180.28131 * 11 10 9 13 13 C 1.30734 * 109.50552 * 180.10821 * 12 11 10 14 14 O 1.35279 * 125.06157 * 179.89371 * 13 12 11 15 15 N 1.36480 * 109.88677 * 359.62438 * 13 12 11 16 16 H 0.97003 * 126.32235 * 180.19332 * 15 13 12 17 17 C 1.37821 * 107.35358 * 0.23284 * 15 13 12 18 18 C 1.50698 * 109.46776 * 120.00092 * 2 1 3 19 19 O 1.21275 * 120.00191 * 120.00483 * 18 2 1 20 20 N 1.34777 * 120.00085 * 299.99482 * 18 2 1 21 21 C 1.46510 * 120.00007 * 0.02562 * 20 18 2 22 22 C 1.46504 * 120.00170 * 180.02562 * 20 18 2 23 23 C 1.50698 * 109.46903 * 90.00429 * 22 20 18 24 24 H 1.08008 * 120.00135 * 0.02562 * 23 22 20 25 25 C 1.37879 * 119.99945 * 179.97438 * 23 22 20 26 26 N 1.31512 * 120.00131 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 120.00028 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.46788 * 0.02562 * 27 25 23 29 29 H 1.48495 * 109.47161 * 120.00180 * 27 25 23 30 30 H 1.48499 * 109.47157 * 240.00692 * 27 25 23 31 31 H 1.09007 * 109.47047 * 60.00140 * 1 2 3 32 32 H 1.08997 * 109.47168 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47167 * 300.00125 * 1 2 3 34 34 H 1.08000 * 119.87244 * 0.02562 * 8 7 5 35 35 H 1.08003 * 119.64119 * 179.97438 * 9 8 7 36 36 H 1.07993 * 119.94391 * 180.02562 * 10 9 8 37 37 H 0.96700 * 114.00116 * 269.69602 * 14 13 12 38 38 H 1.08996 * 109.47003 * 89.99615 * 21 20 18 39 39 H 1.08998 * 109.47043 * 209.99563 * 21 20 18 40 40 H 1.09000 * 109.46961 * 329.99742 * 21 20 18 41 41 H 1.09002 * 109.46932 * 210.00151 * 22 20 18 42 42 H 1.09000 * 109.47198 * 330.00502 * 22 20 18 43 43 H 0.96993 * 120.00171 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2180 0.0669 -2.2853 6 8 1.9971 1.2614 -2.2547 7 6 2.7081 -0.5603 -3.5259 8 6 2.9621 -1.9323 -3.5674 9 6 3.4210 -2.5205 -4.7305 10 6 3.6356 -1.7653 -5.8651 11 6 3.3901 -0.3910 -5.8489 12 7 3.4998 0.5885 -6.7857 13 6 3.1451 1.7334 -6.2636 14 8 3.1373 2.9171 -6.9186 15 7 2.7780 1.5559 -4.9611 16 1 2.4715 2.2454 -4.3515 17 6 2.9240 0.2164 -4.6718 18 6 2.0322 -0.7104 1.2305 19 8 2.7295 -1.6964 1.1192 20 7 1.7067 -0.2499 2.4546 21 6 0.8640 0.9410 2.5890 22 6 2.1954 -0.9402 3.6508 23 6 3.5227 -0.3562 4.0607 24 1 3.9585 0.4490 3.4877 25 6 4.1804 -0.8490 5.1678 26 7 3.6496 -1.8291 5.8658 27 14 5.8254 -0.1245 5.6764 28 1 6.2017 0.9592 4.7334 29 1 5.7187 0.4299 7.0498 30 1 6.8632 -1.1864 5.6503 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 2.7984 -2.5365 -2.6873 35 1 3.6147 -3.5828 -4.7514 36 1 3.9941 -2.2381 -6.7675 37 1 3.9682 3.4076 -6.8543 38 1 -0.1838 0.6428 2.6224 39 1 1.1218 1.4665 3.5085 40 1 1.0273 1.5997 1.7360 41 1 1.4775 -0.8150 4.4613 42 1 2.3169 -2.0015 3.4337 43 1 4.1124 -2.1760 6.6444 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848771622.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:33 Heat of formation + Delta-G solvation = -98.690979 kcal Electronic energy + Delta-G solvation = -29916.102366 eV Core-core repulsion = 25541.309835 eV Total energy + Delta-G solvation = -4374.792531 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.42628 -41.89155 -40.56399 -39.18441 -37.70954 -37.52191 -36.73985 -34.94517 -34.42381 -33.11268 -31.46298 -30.09556 -29.56426 -27.76548 -26.28183 -25.57130 -24.20104 -23.56373 -23.24443 -22.02007 -20.50891 -20.00428 -19.41630 -18.76989 -18.70610 -18.24016 -17.88837 -17.40952 -17.38325 -17.00619 -16.60755 -16.40903 -15.96273 -15.73039 -15.41171 -15.13014 -14.84351 -14.82793 -14.33766 -14.19057 -13.73649 -13.65324 -13.55383 -13.35110 -13.20263 -13.04599 -12.84345 -12.76385 -12.74633 -12.62710 -12.44406 -12.23041 -11.99880 -11.98001 -11.88749 -11.70344 -11.33561 -10.66481 -10.64494 -9.61605 -9.53213 -9.40129 -8.25077 -6.39428 -0.74881 0.23673 0.94757 1.13793 1.33629 1.35465 1.37837 1.48965 1.58998 1.64823 2.28149 2.41082 2.61765 2.66710 3.05100 3.26445 3.36616 3.56313 3.73893 3.81158 3.83851 3.98969 4.04271 4.21193 4.30645 4.49002 4.58936 4.63341 4.66452 4.76301 4.85547 4.93681 5.04271 5.08021 5.11960 5.20110 5.24983 5.29975 5.49726 5.62786 5.76512 5.78535 6.02141 6.39730 6.49373 6.57035 6.59019 6.69440 7.18562 7.34420 8.82423 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014963 B = 0.002383 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.851130 B =11747.183908 C =11931.275530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.081 3.919 3 H 0.115 0.885 4 O -0.331 6.331 5 C 0.513 3.487 6 O -0.534 6.534 7 C -0.144 4.144 8 C -0.024 4.024 9 C -0.128 4.128 10 C -0.014 4.014 11 C 0.025 3.975 12 N -0.504 5.504 13 C 0.459 3.541 14 O -0.440 6.440 15 N -0.586 5.586 16 H 0.436 0.564 17 C 0.098 3.902 18 C 0.500 3.500 19 O -0.575 6.575 20 N -0.599 5.599 21 C 0.067 3.933 22 C 0.260 3.740 23 C -0.545 4.545 24 H 0.051 0.949 25 C 0.010 3.990 26 N -0.925 5.925 27 Si 0.966 3.034 28 H -0.270 1.270 29 H -0.268 1.268 30 H -0.281 1.281 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.152 0.848 35 H 0.180 0.820 36 H 0.168 0.832 37 H 0.436 0.564 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.034 0.966 42 H 0.003 0.997 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.912 6.840 -23.388 24.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.023 3.977 3 H 0.133 0.867 4 O -0.246 6.246 5 C 0.360 3.640 6 O -0.426 6.426 7 C -0.149 4.149 8 C -0.044 4.044 9 C -0.148 4.148 10 C -0.033 4.033 11 C -0.093 4.093 12 N -0.236 5.236 13 C 0.154 3.846 14 O -0.246 6.246 15 N -0.211 5.211 16 H 0.278 0.722 17 C -0.015 4.015 18 C 0.287 3.713 19 O -0.455 6.455 20 N -0.331 5.331 21 C -0.074 4.074 22 C 0.139 3.861 23 C -0.584 4.584 24 H 0.069 0.931 25 C -0.189 4.189 26 N -0.565 5.565 27 Si 0.790 3.210 28 H -0.194 1.194 29 H -0.193 1.193 30 H -0.207 1.207 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.132 0.868 34 H 0.170 0.830 35 H 0.197 0.803 36 H 0.185 0.815 37 H 0.299 0.701 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.052 0.948 42 H 0.021 0.979 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.886 6.408 -24.300 25.601 hybrid contribution 0.879 1.192 1.989 2.480 sum -4.007 7.601 -22.311 23.908 Atomic orbital electron populations 1.22417 0.89184 1.04697 1.06090 1.22555 0.97855 0.96698 0.80631 0.86725 1.86647 1.76921 1.41402 1.19658 1.21424 0.73636 0.84905 0.84026 1.90706 1.50707 1.16398 1.84822 1.17960 1.13690 0.94749 0.88466 1.21719 0.91331 0.91277 1.00029 1.21331 1.00531 1.02404 0.90552 1.20998 0.93634 0.88477 1.00229 1.19151 1.06314 0.95491 0.88338 1.70737 1.24901 0.97664 1.30288 1.20454 0.96228 0.88246 0.79680 1.84803 1.43485 1.26650 1.69628 1.43539 1.56413 1.08619 1.12507 0.72191 1.18399 1.02710 0.84392 0.95966 1.20579 0.80729 0.84889 0.85078 1.90664 1.39428 1.28590 1.86818 1.48034 1.50110 1.29569 1.05408 1.22249 0.94771 0.86320 1.04106 1.18858 0.93919 0.91870 0.81440 1.21707 1.05998 1.19182 1.11508 0.93071 1.25812 1.01670 0.95224 0.96195 1.70036 1.40575 1.27053 1.18817 0.85394 0.78884 0.78285 0.78404 1.19410 1.19281 1.20672 0.89650 0.91113 0.86849 0.82992 0.80291 0.81483 0.70115 0.89537 0.90687 0.89389 0.94814 0.97917 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.81 9.19 71.98 0.66 -3.15 16 2 C 0.08 2.54 2.18 29.85 0.07 2.60 16 3 H 0.12 3.40 6.42 -2.39 -0.02 3.38 16 4 O -0.33 -10.78 8.66 -50.24 -0.44 -11.21 16 5 C 0.51 14.93 7.86 70.23 0.55 15.48 16 6 O -0.53 -15.81 14.53 19.80 0.29 -15.52 16 7 C -0.14 -3.60 5.88 -20.09 -0.12 -3.72 16 8 C -0.02 -0.50 9.61 22.58 0.22 -0.28 16 9 C -0.13 -1.85 9.99 22.19 0.22 -1.63 16 10 C -0.01 -0.23 10.09 22.54 0.23 0.00 16 11 C 0.02 0.55 7.22 39.36 0.28 0.83 16 12 N -0.50 -11.62 11.32 -306.47 -3.47 -15.09 16 13 C 0.46 8.99 9.40 179.73 1.69 10.68 16 14 O -0.44 -5.65 13.63 -85.64 -1.17 -6.82 16 15 N -0.59 -12.26 6.03 -301.77 -1.82 -14.08 16 16 H 0.44 8.37 7.71 -92.71 -0.71 7.65 16 17 C 0.10 2.35 6.88 39.19 0.27 2.62 16 18 C 0.50 21.18 7.15 87.66 0.63 21.80 16 19 O -0.58 -30.30 16.08 15.78 0.25 -30.05 16 20 N -0.60 -24.84 2.86 -851.12 -2.43 -27.27 16 21 C 0.07 1.88 8.80 127.77 1.12 3.01 16 22 C 0.26 13.71 5.16 85.63 0.44 14.16 16 23 C -0.55 -31.11 9.39 25.60 0.24 -30.87 16 24 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 25 C 0.01 0.59 5.46 84.66 0.46 1.05 16 26 N -0.93 -55.07 13.29 21.45 0.28 -54.79 16 27 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 28 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 29 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 30 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 31 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 33 H 0.11 2.11 4.53 -2.39 -0.01 2.10 16 34 H 0.15 3.16 7.60 -2.91 -0.02 3.13 16 35 H 0.18 1.32 8.06 -2.91 -0.02 1.29 16 36 H 0.17 1.71 8.06 -2.91 -0.02 1.68 16 37 H 0.44 0.67 9.06 -74.06 -0.67 0.00 16 38 H 0.09 1.86 6.95 -2.39 -0.02 1.85 16 39 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 40 H 0.09 1.96 6.01 -2.39 -0.01 1.95 16 41 H 0.03 1.77 8.07 -2.39 -0.02 1.75 16 42 H 0.00 0.16 7.42 -2.39 -0.02 0.15 16 43 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -82.94 371.86 0.22 -82.73 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -0.28 Total: 12.94 kcal Atomic # 6 Polarization: 25.61 SS G_CDS: 6.97 Total: 32.58 kcal Atomic # 7 Polarization: -103.79 SS G_CDS: -7.43 Total: -111.23 kcal Atomic # 8 Polarization: -62.54 SS G_CDS: -1.06 Total: -63.60 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -82.94 0.22 -82.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848771622.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.965 kcal (2) G-P(sol) polarization free energy of solvation -82.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds