Wall clock time and date at job start Wed Apr 1 2020 04:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46503 * 109.47201 * 2 1 4 4 C 1.46496 * 120.00099 * 270.00121 * 3 2 1 5 5 C 1.52996 * 109.47318 * 270.00376 * 4 3 2 6 6 H 1.09003 * 109.47562 * 59.99898 * 5 4 3 7 7 O 1.42905 * 109.46856 * 299.99770 * 5 4 3 8 8 C 1.53001 * 109.47643 * 180.02562 * 5 4 3 9 9 F 1.39899 * 109.46851 * 59.99315 * 8 5 4 10 10 F 1.39892 * 109.47490 * 179.97438 * 8 5 4 11 11 F 1.39901 * 109.46803 * 300.00081 * 8 5 4 12 12 C 1.34773 * 119.99694 * 90.00107 * 3 2 1 13 13 O 1.21581 * 119.99899 * 179.97438 * 12 3 2 14 14 N 1.34778 * 120.00135 * 359.97438 * 12 3 2 15 15 C 1.39462 * 119.99818 * 174.80904 * 14 12 3 16 16 C 1.38644 * 119.64628 * 174.65033 * 15 14 12 17 17 C 1.40820 * 118.67593 * 180.25207 * 16 15 14 18 18 C 1.41537 * 120.99815 * 179.72183 * 17 16 15 19 19 H 1.08003 * 119.99956 * 26.14692 * 18 17 16 20 20 C 1.40034 * 120.00209 * 206.14324 * 18 17 16 21 21 N 1.30743 * 119.99624 * 9.78937 * 20 18 17 22 22 Si 1.86794 * 120.00231 * 189.79130 * 20 18 17 23 23 H 1.48509 * 109.47023 * 90.00070 * 22 20 18 24 24 H 1.48501 * 109.47268 * 209.99579 * 22 20 18 25 25 H 1.48505 * 109.47374 * 330.00173 * 22 20 18 26 26 C 1.41164 * 118.00053 * 359.51344 * 17 16 15 27 27 C 1.36589 * 119.13208 * 0.46817 * 26 17 16 28 28 N 1.32078 * 121.25631 * 359.77104 * 27 26 17 29 29 H 1.08997 * 109.47104 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46442 * 300.00033 * 1 2 3 31 31 H 1.09002 * 109.46969 * 59.99835 * 1 2 3 32 32 H 1.09005 * 109.46434 * 240.00424 * 2 1 3 33 33 H 1.08991 * 109.46974 * 120.00673 * 2 1 3 34 34 H 1.09008 * 109.47170 * 29.99932 * 4 3 2 35 35 H 1.08996 * 109.46997 * 150.00256 * 4 3 2 36 36 H 0.96693 * 114.00512 * 300.00165 * 7 5 4 37 37 H 0.96998 * 119.99723 * 354.81381 * 14 12 3 38 38 H 1.07999 * 120.66374 * 359.97438 * 16 15 14 39 39 H 0.97006 * 119.99915 * 180.02562 * 21 20 18 40 40 H 1.07997 * 120.43522 * 180.24280 * 26 17 16 41 41 H 1.08003 * 119.37515 * 179.79439 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0719 -1.2687 5 6 3.7075 1.8314 -1.7105 6 1 3.8745 0.7621 -1.8409 7 8 4.6001 2.3350 -0.7146 8 6 3.9628 2.5532 -3.0352 9 9 3.7486 3.9254 -2.8673 10 9 5.2841 2.3338 -3.4388 11 9 3.0889 2.0608 -4.0104 12 6 2.2431 2.0165 1.1672 13 8 2.6488 3.1626 1.1672 14 7 2.0179 1.3813 2.3344 15 6 2.3520 1.9982 3.5397 16 6 2.0164 1.3879 4.7386 17 6 2.3588 2.0314 5.9434 18 6 2.0349 1.4555 7.1950 19 1 1.9194 0.3853 7.2833 20 6 1.8641 2.2731 8.3190 21 7 1.8134 3.5722 8.1805 22 14 1.7089 1.5079 10.0159 23 1 3.0571 1.3764 10.6248 24 1 0.8607 2.3739 10.8738 25 1 1.0858 0.1650 9.8983 26 6 3.0388 3.2660 5.8654 27 6 3.3276 3.7897 4.6374 28 7 2.9869 3.1609 3.5269 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.5817 1.6877 -2.0284 35 1 2.0957 3.1410 -1.1383 36 1 4.5072 3.2825 -0.5460 37 1 1.6237 0.4951 2.3360 38 1 1.4988 0.4401 4.7482 39 1 1.6955 4.1387 8.9591 40 1 3.3237 3.7915 6.7649 41 1 3.8448 4.7356 4.5731 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871728858.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:28 Heat of formation + Delta-G solvation = -184.697725 kcal Electronic energy + Delta-G solvation = -31035.941375 eV Core-core repulsion = 26115.562572 eV Total energy + Delta-G solvation = -4920.378804 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.37257 -47.89652 -47.83681 -40.33807 -38.45221 -37.33500 -35.67869 -34.53197 -33.56923 -31.55448 -30.64852 -29.91419 -28.46928 -26.10173 -25.82322 -23.61568 -22.80360 -21.77761 -21.41181 -19.58423 -18.88644 -18.74946 -18.46760 -18.14089 -17.61523 -16.38358 -16.21758 -15.55928 -15.45764 -14.90345 -14.75206 -14.68673 -14.46340 -14.32083 -14.27778 -14.11055 -14.04230 -13.98767 -13.94780 -13.66143 -13.42978 -13.10732 -12.95554 -12.40487 -12.34784 -12.22404 -11.93082 -11.69687 -11.41998 -11.38843 -11.26178 -10.98005 -10.76458 -10.37117 -10.02031 -9.77022 -9.57813 -9.40937 -8.70286 -8.00255 -7.73787 -7.03032 -6.75371 -4.62996 2.25224 2.71035 2.74584 2.77600 3.01991 3.04862 3.22659 3.48450 3.52881 3.68219 3.81599 3.86003 4.06547 4.21866 4.47672 4.59322 4.67519 4.70943 4.97776 5.09532 5.16016 5.41036 5.49895 5.57636 5.70738 5.90286 5.97913 6.32715 6.52185 6.59474 6.76513 6.92035 7.04845 7.16504 7.24871 7.43291 7.54373 7.89393 8.01447 8.24417 8.48443 8.73465 8.75251 9.04213 9.72501 10.10128 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.022991 B = 0.002418 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.578425 B =11579.200369 C =12338.186066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.103 3.897 3 N -0.627 5.627 4 C 0.104 3.896 5 C 0.056 3.944 6 H 0.136 0.864 7 O -0.518 6.518 8 C 0.420 3.580 9 F -0.180 7.180 10 F -0.177 7.177 11 F -0.183 7.183 12 C 0.703 3.297 13 O -0.525 6.525 14 N -0.667 5.667 15 C 0.365 3.635 16 C -0.305 4.305 17 C 0.147 3.853 18 C -0.455 4.455 19 H 0.080 0.920 20 C 0.075 3.925 21 N -0.791 5.791 22 Si 0.916 3.084 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.262 1.262 26 C -0.222 4.222 27 C 0.104 3.896 28 N -0.550 5.550 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.395 0.605 37 H 0.402 0.598 38 H 0.100 0.900 39 H 0.282 0.718 40 H 0.131 0.869 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.000 -6.574 -17.435 18.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.021 4.021 3 N -0.367 5.367 4 C -0.022 4.022 5 C -0.008 4.008 6 H 0.154 0.846 7 O -0.325 6.325 8 C 0.365 3.635 9 F -0.161 7.161 10 F -0.158 7.158 11 F -0.165 7.165 12 C 0.404 3.596 13 O -0.395 6.395 14 N -0.316 5.316 15 C 0.136 3.864 16 C -0.332 4.332 17 C 0.138 3.862 18 C -0.486 4.486 19 H 0.098 0.902 20 C -0.144 4.144 21 N -0.416 5.416 22 Si 0.740 3.260 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.186 1.186 26 C -0.246 4.246 27 C -0.046 4.046 28 N -0.269 5.269 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.246 0.754 37 H 0.238 0.762 38 H 0.118 0.882 39 H 0.093 0.907 40 H 0.149 0.851 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.301 -5.668 -18.130 18.997 hybrid contribution -0.751 -0.542 1.222 1.533 sum -1.051 -6.210 -16.908 18.043 Atomic orbital electron populations 1.22268 0.95690 1.02435 1.03008 1.21548 0.94583 0.82697 1.03243 1.47044 1.71218 1.14254 1.04136 1.21817 0.93143 1.00873 0.86365 1.23693 0.93833 1.00093 0.83218 0.84602 1.86695 1.58669 1.31232 1.55862 1.21767 0.74476 0.78448 0.88837 1.93205 1.94482 1.32963 1.95480 1.93208 1.36272 1.94438 1.91926 1.93179 1.69527 1.87507 1.66244 1.15898 0.79029 0.84805 0.79882 1.90968 1.48574 1.15280 1.84719 1.42682 1.65008 1.20245 1.03624 1.17755 0.94837 0.91271 0.82550 1.21166 1.15890 1.04836 0.91277 1.17584 0.86232 0.90675 0.91664 1.19563 1.42023 0.94988 0.92074 0.90188 1.25962 0.92305 0.94605 1.01492 1.69756 1.34718 1.04681 1.32490 0.86191 0.79175 0.79998 0.80639 1.19197 1.20185 1.18585 1.22076 1.04612 0.99940 0.97926 1.21626 0.97377 0.97646 0.87999 1.67168 1.19385 1.09050 1.31296 0.91290 0.91957 0.92184 0.90241 0.90406 0.88656 0.88034 0.75384 0.76243 0.88210 0.90666 0.85138 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 10.24 37.16 0.38 -0.98 16 2 C 0.10 0.87 5.85 -4.04 -0.02 0.85 16 3 N -0.63 -7.61 2.43 -179.42 -0.44 -8.04 16 4 C 0.10 1.05 4.90 -4.05 -0.02 1.03 16 5 C 0.06 0.55 3.24 -26.73 -0.09 0.47 16 6 H 0.14 1.11 8.14 -51.93 -0.42 0.69 16 7 O -0.52 -7.00 12.09 -43.99 -0.53 -7.53 16 8 C 0.42 4.17 2.85 37.16 0.11 4.28 16 9 F -0.18 -1.98 16.41 2.25 0.04 -1.95 16 10 F -0.18 -1.99 17.26 2.25 0.04 -1.95 16 11 F -0.18 -1.67 16.80 2.25 0.04 -1.63 16 12 C 0.70 12.35 7.74 -86.92 -0.67 11.68 16 13 O -0.53 -11.19 13.00 -3.46 -0.05 -11.24 16 14 N -0.67 -12.13 5.22 -15.86 -0.08 -12.22 16 15 C 0.36 8.45 7.41 -154.68 -1.15 7.30 16 16 C -0.31 -7.24 9.74 -38.46 -0.37 -7.62 16 17 C 0.15 3.83 5.60 -106.55 -0.60 3.23 16 18 C -0.46 -11.58 9.13 -37.65 -0.34 -11.93 16 19 H 0.08 1.93 7.87 -52.48 -0.41 1.52 16 20 C 0.08 1.81 5.31 -17.34 -0.09 1.72 16 21 N -0.79 -19.79 10.70 55.55 0.59 -19.20 16 22 Si 0.92 17.94 29.57 -169.99 -5.03 12.91 16 23 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 24 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 25 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 26 C -0.22 -5.75 8.73 -39.07 -0.34 -6.09 16 27 C 0.10 2.58 11.10 -18.04 -0.20 2.38 16 28 N -0.55 -13.84 7.89 -12.75 -0.10 -13.94 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.48 8.07 -51.93 -0.42 0.06 16 33 H 0.08 0.67 6.45 -51.93 -0.33 0.33 16 34 H 0.10 0.68 7.73 -51.92 -0.40 0.28 16 35 H 0.10 1.20 7.08 -51.93 -0.37 0.83 16 36 H 0.39 5.27 8.09 45.56 0.37 5.64 16 37 H 0.40 5.82 6.51 -40.82 -0.27 5.56 16 38 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 39 H 0.28 6.41 8.29 -40.82 -0.34 6.08 16 40 H 0.13 3.43 6.11 -52.49 -0.32 3.11 16 41 H 0.12 2.72 8.06 -52.48 -0.42 2.30 16 LS Contribution 359.42 15.07 5.42 5.42 Total: -1.00 -31.79 359.42 -7.33 -39.12 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -3.82 Total: 13.92 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -3.41 Total: 6.33 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -0.02 Total: -53.40 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.58 Total: -18.77 kcal Atomic # 9 Polarization: -5.65 SS G_CDS: 0.11 Total: -5.53 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.79 -7.33 -39.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871728858.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.577 kcal (2) G-P(sol) polarization free energy of solvation -31.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds