Wall clock time and date at job start Wed Apr 1 2020 04:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47142 * 2 1 4 4 C 1.46494 * 119.99875 * 89.99850 * 3 2 1 5 5 C 1.53004 * 109.46910 * 90.00308 * 4 3 2 6 6 H 1.08995 * 109.47239 * 305.00323 * 5 4 3 7 7 O 1.42901 * 109.47065 * 64.99845 * 5 4 3 8 8 C 1.53001 * 109.47271 * 184.99672 * 5 4 3 9 9 F 1.39898 * 109.46834 * 60.00155 * 8 5 4 10 10 F 1.39900 * 109.46793 * 180.02562 * 8 5 4 11 11 F 1.39898 * 109.47162 * 300.00201 * 8 5 4 12 12 C 1.34780 * 119.99893 * 270.00551 * 3 2 1 13 13 O 1.21577 * 119.99912 * 179.97438 * 12 3 2 14 14 N 1.34771 * 120.00107 * 0.02562 * 12 3 2 15 15 C 1.39247 * 120.00208 * 174.21112 * 14 12 3 16 16 C 1.39681 * 119.57274 * 341.17898 * 15 14 12 17 17 C 1.38646 * 119.49874 * 179.72726 * 16 15 14 18 18 C 1.38358 * 118.66570 * 0.53693 * 17 16 15 19 19 C 1.40575 * 119.13286 * 359.72889 * 18 17 16 20 20 C 1.41332 * 119.78672 * 180.02562 * 19 18 17 21 21 H 1.07997 * 120.00091 * 6.31335 * 20 19 18 22 22 C 1.40028 * 119.99677 * 186.32075 * 20 19 18 23 23 N 1.30748 * 120.00118 * 353.67044 * 22 20 19 24 24 Si 1.86804 * 119.99978 * 173.66394 * 22 20 19 25 25 H 1.48503 * 109.46502 * 94.98727 * 24 22 20 26 26 H 1.48495 * 109.47359 * 214.98445 * 24 22 20 27 27 H 1.48498 * 109.47131 * 334.99032 * 24 22 20 28 28 N 1.31903 * 119.57741 * 161.44963 * 15 14 12 29 29 H 1.09004 * 109.46595 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46838 * 299.99577 * 1 2 3 31 31 H 1.08996 * 109.47582 * 59.99918 * 1 2 3 32 32 H 1.09002 * 109.46838 * 240.00423 * 2 1 3 33 33 H 1.08996 * 109.47582 * 120.00082 * 2 1 3 34 34 H 1.09003 * 109.47558 * 210.00134 * 4 3 2 35 35 H 1.08991 * 109.47658 * 330.00674 * 4 3 2 36 36 H 0.96700 * 114.00076 * 60.00135 * 7 5 4 37 37 H 0.97006 * 120.00126 * 354.20698 * 14 12 3 38 38 H 1.08005 * 120.24982 * 359.97438 * 16 15 14 39 39 H 1.08002 * 120.66949 * 180.24164 * 17 16 15 40 40 H 1.08006 * 120.43215 * 179.74969 * 18 17 16 41 41 H 0.97002 * 119.99967 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.7076 1.8314 1.7103 6 1 3.9004 0.7596 1.7548 7 8 4.5993 2.4372 0.7724 8 6 3.9272 2.4470 3.0937 9 9 3.0542 1.8538 4.0119 10 9 5.2487 2.2276 3.4972 11 9 3.6798 3.8227 3.0366 12 6 2.2429 2.0166 -1.1672 13 8 2.6477 3.1630 -1.1672 14 7 2.0177 1.3815 -2.3344 15 6 2.1332 2.0735 -3.5372 16 6 2.0884 3.4696 -3.5364 17 6 2.2093 4.1572 -4.7343 18 6 2.3605 3.4326 -5.9032 19 6 2.3924 2.0287 -5.8388 20 6 2.5468 1.2748 -7.0243 21 1 2.7418 1.7755 -7.9611 22 6 2.4469 -0.1213 -6.9841 23 7 2.3346 -0.7359 -5.8356 24 14 2.4738 -1.1057 -8.5715 25 1 3.8588 -1.5666 -8.8445 26 1 1.5775 -2.2823 -8.4396 27 1 2.0066 -0.2507 -9.6921 28 7 2.2782 1.4021 -4.6633 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8935 -0.5138 0.8899 34 1 2.0955 3.1411 1.1384 35 1 1.5819 1.6877 2.0284 36 1 4.4842 3.3930 0.6810 37 1 1.7752 0.4422 -2.3366 38 1 1.9645 4.0094 -2.6092 39 1 2.1811 5.2366 -4.7551 40 1 2.4531 3.9390 -6.8526 41 1 2.2657 -1.7031 -5.8077 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881147257.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:43 Heat of formation + Delta-G solvation = -176.904875 kcal Electronic energy + Delta-G solvation = -31354.969228 eV Core-core repulsion = 26434.928348 eV Total energy + Delta-G solvation = -4920.040880 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.40575 -47.93160 -47.86727 -40.48417 -38.34513 -37.36719 -35.81820 -34.35170 -33.24223 -31.56848 -30.38052 -30.01568 -28.96235 -26.17465 -25.34409 -23.61743 -22.86121 -21.59907 -21.43470 -19.58947 -18.94918 -18.81851 -18.51323 -18.06547 -17.45059 -16.50619 -16.38720 -15.75896 -15.38516 -14.88073 -14.72104 -14.64621 -14.59463 -14.41643 -14.31343 -14.20999 -14.05070 -14.02057 -13.96096 -13.50312 -13.37295 -13.02713 -12.89149 -12.31144 -12.24640 -12.02929 -11.86806 -11.74959 -11.38216 -11.26965 -11.04678 -10.85214 -10.81683 -10.66847 -10.12474 -9.84264 -9.32032 -9.10772 -8.73633 -8.02363 -7.67340 -7.06482 -6.42397 -4.49625 2.21797 2.63253 2.74347 2.94675 3.08516 3.11939 3.24818 3.44600 3.48331 3.62086 3.72901 3.94938 4.08632 4.19106 4.44180 4.59678 4.73604 4.78597 4.99585 5.12301 5.21059 5.39940 5.56244 5.66820 5.90622 6.06116 6.13303 6.29136 6.43176 6.69546 6.81789 6.91710 6.98955 7.17079 7.19294 7.50875 7.58952 7.90274 8.01783 8.16078 8.36881 8.70175 8.85333 9.01318 10.05400 10.31031 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.017482 B = 0.002749 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.297876 B =10183.430577 C =10742.354752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.101 3.899 3 N -0.623 5.623 4 C 0.104 3.896 5 C 0.054 3.946 6 H 0.138 0.862 7 O -0.517 6.517 8 C 0.421 3.579 9 F -0.182 7.182 10 F -0.176 7.176 11 F -0.181 7.181 12 C 0.716 3.284 13 O -0.563 6.563 14 N -0.655 5.655 15 C 0.373 3.627 16 C -0.311 4.311 17 C -0.049 4.049 18 C -0.291 4.291 19 C 0.281 3.719 20 C -0.436 4.436 21 H 0.085 0.915 22 C 0.072 3.928 23 N -0.724 5.724 24 Si 0.906 3.094 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.261 1.261 28 N -0.509 5.509 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.392 0.608 37 H 0.403 0.597 38 H 0.133 0.867 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.968 -1.085 16.986 17.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.022 4.022 3 N -0.360 5.360 4 C -0.022 4.022 5 C -0.010 4.010 6 H 0.156 0.844 7 O -0.323 6.323 8 C 0.365 3.635 9 F -0.164 7.164 10 F -0.158 7.158 11 F -0.162 7.162 12 C 0.418 3.582 13 O -0.439 6.439 14 N -0.303 5.303 15 C 0.138 3.862 16 C -0.336 4.336 17 C -0.074 4.074 18 C -0.314 4.314 19 C 0.155 3.845 20 C -0.468 4.468 21 H 0.103 0.897 22 C -0.152 4.152 23 N -0.346 5.346 24 Si 0.731 3.269 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.185 1.185 28 N -0.228 5.228 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.243 0.757 37 H 0.240 0.760 38 H 0.150 0.850 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.476 -1.964 17.045 17.221 hybrid contribution -0.245 0.441 -0.263 0.569 sum -1.721 -1.523 16.782 16.938 Atomic orbital electron populations 1.22231 0.95468 1.02573 1.02908 1.21610 0.94854 0.82216 1.03513 1.46946 1.70610 1.14556 1.03933 1.21861 0.93197 1.00849 0.86264 1.23733 0.93953 1.00379 0.82891 0.84399 1.86729 1.57804 1.28102 1.59651 1.21749 0.74357 0.77118 0.90245 1.93182 1.69589 1.83651 1.69942 1.93215 1.36138 1.94395 1.92033 1.93198 1.93959 1.32419 1.96661 1.15589 0.78266 0.84425 0.79941 1.90793 1.51299 1.16485 1.85319 1.42378 1.70443 1.14122 1.03341 1.18215 0.94738 0.87810 0.85420 1.21594 1.19685 0.93228 0.99128 1.20802 0.96297 0.97601 0.92665 1.21705 1.17195 0.95452 0.97036 1.18154 0.88068 0.88428 0.89893 1.19550 1.42288 0.91064 0.93910 0.89707 1.26025 0.93417 0.98534 0.97238 1.70125 1.29646 1.09263 1.25541 0.86336 0.78851 0.79370 0.82376 1.19581 1.20189 1.18516 1.68004 1.21398 1.37309 0.96056 0.91210 0.92301 0.91822 0.89965 0.90117 0.87872 0.88467 0.75710 0.75997 0.85002 0.88415 0.88297 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 10.24 37.16 0.38 -1.17 16 2 C 0.10 0.97 5.94 -4.04 -0.02 0.95 16 3 N -0.62 -7.71 2.46 -179.43 -0.44 -8.15 16 4 C 0.10 1.02 4.87 -4.04 -0.02 1.00 16 5 C 0.05 0.53 3.21 -26.73 -0.09 0.45 16 6 H 0.14 1.17 8.14 -51.93 -0.42 0.75 16 7 O -0.52 -6.72 12.15 -42.94 -0.52 -7.24 16 8 C 0.42 4.02 2.85 37.16 0.11 4.12 16 9 F -0.18 -1.62 16.71 2.25 0.04 -1.58 16 10 F -0.18 -1.94 17.26 2.25 0.04 -1.90 16 11 F -0.18 -1.85 16.51 2.25 0.04 -1.82 16 12 C 0.72 12.60 7.74 -86.92 -0.67 11.93 16 13 O -0.56 -11.25 11.70 -2.41 -0.03 -11.28 16 14 N -0.66 -12.99 5.29 -15.79 -0.08 -13.07 16 15 C 0.37 9.15 7.51 -155.00 -1.16 7.99 16 16 C -0.31 -7.52 8.83 -38.89 -0.34 -7.86 16 17 C -0.05 -1.15 10.15 -39.39 -0.40 -1.55 16 18 C -0.29 -7.30 9.83 -38.66 -0.38 -7.68 16 19 C 0.28 7.70 6.54 -85.00 -0.56 7.15 16 20 C -0.44 -11.58 9.13 -37.74 -0.34 -11.93 16 21 H 0.08 2.12 7.85 -52.49 -0.41 1.70 16 22 C 0.07 1.80 5.49 -17.34 -0.10 1.71 16 23 N -0.72 -18.56 11.49 55.55 0.64 -17.92 16 24 Si 0.91 18.30 29.56 -169.99 -5.03 13.28 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 26 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 27 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 28 N -0.51 -13.77 7.92 -10.26 -0.08 -13.85 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.87 6.29 -51.93 -0.33 0.55 16 33 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 34 H 0.10 1.13 7.22 -51.93 -0.38 0.76 16 35 H 0.10 0.69 7.59 -51.93 -0.39 0.29 16 36 H 0.39 4.67 8.39 45.56 0.38 5.05 16 37 H 0.40 7.29 6.52 -40.82 -0.27 7.02 16 38 H 0.13 3.12 5.33 -52.50 -0.28 2.84 16 39 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 40 H 0.10 2.28 8.06 -52.48 -0.42 1.86 16 41 H 0.27 6.24 8.29 -40.82 -0.34 5.90 16 LS Contribution 358.94 15.07 5.41 5.41 Total: -1.00 -31.68 358.94 -7.38 -39.06 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -3.76 Total: 13.96 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -3.60 Total: 5.11 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.03 Total: -52.99 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.55 Total: -18.52 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.11 Total: -5.30 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.68 -7.38 -39.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881147257.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.842 kcal (2) G-P(sol) polarization free energy of solvation -31.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds