Wall clock time and date at job start Wed Apr 1 2020 04:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.47021 * 2 1 4 4 C 1.37103 * 120.00242 * 263.56092 * 3 2 1 5 5 H 1.08000 * 120.00027 * 188.39423 * 4 3 2 6 6 C 1.38948 * 119.99731 * 8.39162 * 4 3 2 7 7 N 1.31419 * 120.00320 * 25.16009 * 6 4 3 8 8 Si 1.86799 * 119.99936 * 205.16387 * 6 4 3 9 9 H 1.48507 * 109.47084 * 84.98741 * 8 6 4 10 10 H 1.48498 * 109.47090 * 204.98563 * 8 6 4 11 11 H 1.48494 * 109.47091 * 324.98519 * 8 6 4 12 12 C 1.34775 * 120.00360 * 83.55976 * 3 2 1 13 13 O 1.21295 * 120.00738 * 180.02562 * 12 3 2 14 14 C 1.50706 * 119.99662 * 359.97438 * 12 3 2 15 15 N 1.46499 * 109.46852 * 179.97438 * 14 12 3 16 16 N 1.40406 * 126.11741 * 270.02160 * 15 14 12 17 17 C 1.31184 * 108.30180 * 179.91829 * 16 15 14 18 18 C 1.50697 * 125.98249 * 179.97438 * 17 16 15 19 19 F 1.39898 * 109.46738 * 4.98014 * 18 17 16 20 20 F 1.39897 * 109.47217 * 124.97814 * 18 17 16 21 21 F 1.39895 * 109.47052 * 244.97888 * 18 17 16 22 22 C 1.38920 * 108.06658 * 0.04754 * 17 16 15 23 23 C 1.33952 * 126.11071 * 90.00739 * 15 14 12 24 24 C 1.50886 * 129.25512 * 0.13134 * 23 15 14 25 25 C 1.53589 * 107.69510 * 164.20265 * 24 23 15 26 26 O 1.42998 * 109.66237 * 47.79800 * 25 24 23 27 27 C 1.43424 * 114.39392 * 289.10434 * 26 25 24 28 28 H 1.09001 * 109.47053 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47404 * 300.00026 * 1 2 3 30 30 H 1.08997 * 109.47421 * 59.99699 * 1 2 3 31 31 H 1.08997 * 109.46804 * 239.99803 * 2 1 3 32 32 H 1.08997 * 109.46682 * 120.00217 * 2 1 3 33 33 H 0.96993 * 119.99989 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.46657 * 60.00435 * 14 12 3 35 35 H 1.08992 * 109.47559 * 300.00033 * 14 12 3 36 36 H 1.08994 * 109.81806 * 44.65620 * 24 23 15 37 37 H 1.09004 * 109.81492 * 283.74952 * 24 23 15 38 38 H 1.08996 * 109.43975 * 287.73078 * 25 24 23 39 39 H 1.09005 * 109.40556 * 167.82983 * 25 24 23 40 40 H 1.09003 * 109.76057 * 170.41541 * 27 26 25 41 41 H 1.09007 * 109.76613 * 291.12940 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3724 1.9832 -1.1798 5 1 2.8579 2.9478 -1.1695 6 6 2.1066 1.3521 -2.3888 7 7 1.1281 0.4788 -2.4731 8 14 3.1401 1.7449 -3.8945 9 1 4.3643 0.9043 -3.8876 10 1 2.3533 1.4634 -5.1221 11 1 3.5242 3.1791 -3.8708 12 6 2.1195 2.0602 1.1598 13 8 2.5234 3.2040 1.1598 14 6 1.7298 1.3988 2.4566 15 7 1.9301 2.3378 3.5632 16 7 3.1057 2.4920 4.3152 17 6 2.9010 3.4269 5.2125 18 6 3.9010 3.9112 6.2305 19 9 5.1339 3.2895 6.0053 20 9 4.0498 5.2974 6.1152 21 9 3.4477 3.5961 7.5159 22 6 1.6006 3.8916 5.0615 23 6 1.0244 3.2029 4.0381 24 6 -0.3960 3.4412 3.5883 25 6 -1.1096 4.2321 4.6947 26 8 -0.2936 5.3337 5.1015 27 6 0.8779 4.9618 5.8407 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.9428 0.0380 -3.3170 34 1 2.3484 0.5151 2.6140 35 1 0.6810 1.1053 2.4140 36 1 -0.8994 2.4870 3.4329 37 1 -0.3988 4.0164 2.6624 38 1 -1.2899 3.5792 5.5487 39 1 -2.0612 4.6059 4.3165 40 1 1.5264 5.8291 5.9645 41 1 0.5896 4.5748 6.8182 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930619304.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:42 Heat of formation + Delta-G solvation = -128.717606 kcal Electronic energy + Delta-G solvation = -31942.546600 eV Core-core repulsion = 27024.595277 eV Total energy + Delta-G solvation = -4917.951324 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.13352 -47.66792 -47.61103 -41.79601 -38.84957 -38.14960 -35.39048 -33.94479 -32.30350 -31.90641 -30.31736 -29.70063 -28.76273 -26.23775 -25.20816 -24.18211 -23.62714 -22.42643 -21.10691 -19.72257 -19.22062 -18.53279 -18.13957 -17.73078 -17.17016 -16.80710 -16.45160 -15.97283 -15.62119 -14.98080 -14.75766 -14.55924 -14.47711 -14.42496 -14.16725 -14.06301 -14.01437 -13.79024 -13.76577 -13.61997 -13.42603 -13.02773 -12.78356 -12.64394 -12.41841 -12.17502 -11.88383 -11.56622 -11.44326 -11.20135 -11.11648 -11.00850 -10.80467 -10.46985 -10.35724 -10.09737 -9.98468 -9.64090 -9.11465 -8.71681 -8.27342 -7.99791 -6.56463 -3.98053 1.62793 2.01846 2.23984 2.80919 3.03189 3.16865 3.21497 3.53685 3.63345 3.73487 3.95194 4.02013 4.37066 4.39950 4.59628 4.67432 4.75449 4.86520 4.95317 5.06850 5.18140 5.29724 5.31925 5.34717 5.39453 5.50808 5.72887 5.82102 5.88476 5.99571 6.16281 6.25302 6.34043 6.49794 6.84281 7.01011 7.02027 7.26637 7.42452 7.52350 7.84753 8.27640 8.95756 9.17978 9.69630 10.43797 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.014465 B = 0.003343 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.196525 B = 8372.641226 C = 9223.279753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.112 3.888 3 N -0.428 5.428 4 C -0.309 4.309 5 H 0.106 0.894 6 C 0.035 3.965 7 N -0.862 5.862 8 Si 0.922 3.078 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.269 1.269 12 C 0.418 3.582 13 O -0.574 6.574 14 C 0.112 3.888 15 N -0.303 5.303 16 N -0.229 5.229 17 C -0.010 4.010 18 C 0.558 3.442 19 F -0.167 7.167 20 F -0.167 7.167 21 F -0.171 7.171 22 C -0.257 4.257 23 C 0.119 3.881 24 C -0.094 4.094 25 C 0.070 3.930 26 O -0.374 6.374 27 C 0.142 3.858 28 H 0.043 0.957 29 H 0.020 0.980 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.033 0.967 33 H 0.270 0.730 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.058 0.942 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.896 0.115 14.400 15.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 N -0.147 5.147 4 C -0.436 4.436 5 H 0.124 0.876 6 C -0.169 4.169 7 N -0.501 5.501 8 Si 0.748 3.252 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.194 1.194 12 C 0.204 3.796 13 O -0.458 6.458 14 C -0.012 4.012 15 N -0.082 5.082 16 N -0.053 5.053 17 C -0.175 4.175 18 C 0.502 3.498 19 F -0.148 7.148 20 F -0.148 7.148 21 F -0.152 7.152 22 C -0.270 4.270 23 C -0.012 4.012 24 C -0.133 4.133 25 C -0.008 4.008 26 O -0.292 6.292 27 C 0.064 3.936 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.112 0.888 37 H 0.122 0.878 38 H 0.076 0.924 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.973 -0.203 13.603 14.172 hybrid contribution 0.211 0.082 -0.524 0.571 sum -3.761 -0.121 13.079 13.610 Atomic orbital electron populations 1.22140 0.96304 1.00277 1.02013 1.21592 0.94738 0.83533 1.01328 1.43793 1.54576 1.11095 1.05194 1.19746 1.36283 1.05821 0.81723 0.87623 1.25217 0.95776 0.96867 0.99053 1.70079 1.24588 1.28348 1.27089 0.86001 0.79878 0.79428 0.79851 1.20161 1.20925 1.19354 1.19731 0.87742 0.87511 0.84577 1.90613 1.51452 1.17824 1.85953 1.21900 1.04071 0.91022 0.84230 1.47796 1.07473 1.28437 1.24493 1.77599 1.04010 1.18588 1.05152 1.21341 0.94786 1.01615 0.99755 1.16868 0.78857 0.75225 0.78896 1.93231 1.44670 1.82415 1.94463 1.93224 1.95747 1.29918 1.95918 1.93212 1.89041 1.92714 1.40228 1.20042 0.94253 1.07275 1.05397 1.20718 0.94184 0.91736 0.94552 1.21165 0.88205 1.02351 1.01543 1.22610 0.93694 0.88911 0.95580 1.88039 1.35679 1.31405 1.74048 1.21022 0.85352 0.95228 0.91979 0.93819 0.96060 0.88605 0.87401 0.94895 0.91953 0.86846 0.86650 0.88823 0.87782 0.92405 0.87542 0.87817 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.64 37.16 0.36 -2.31 16 2 C 0.11 2.21 5.07 -4.04 -0.02 2.19 16 3 N -0.43 -10.06 2.64 -114.81 -0.30 -10.36 16 4 C -0.31 -8.07 9.43 -14.93 -0.14 -8.21 16 5 H 0.11 3.01 7.31 -52.49 -0.38 2.62 16 6 C 0.03 0.84 4.90 -17.47 -0.09 0.76 16 7 N -0.86 -20.33 8.65 55.50 0.48 -19.85 16 8 Si 0.92 19.57 29.62 -169.99 -5.04 14.53 16 9 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 10 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 11 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 12 C 0.42 9.64 7.65 -10.98 -0.08 9.55 16 13 O -0.57 -15.78 16.02 5.54 0.09 -15.70 16 14 C 0.11 1.97 5.41 -5.19 -0.03 1.94 16 15 N -0.30 -5.57 3.08 -58.27 -0.18 -5.75 16 16 N -0.23 -4.45 12.38 33.54 0.42 -4.04 16 17 C -0.01 -0.18 6.49 -82.62 -0.54 -0.71 16 18 C 0.56 8.31 3.40 36.00 0.12 8.44 16 19 F -0.17 -2.63 17.14 2.25 0.04 -2.59 16 20 F -0.17 -2.40 16.94 2.25 0.04 -2.36 16 21 F -0.17 -2.24 17.30 2.25 0.04 -2.20 16 22 C -0.26 -4.10 6.01 -105.06 -0.63 -4.73 16 23 C 0.12 1.95 6.81 -82.33 -0.56 1.39 16 24 C -0.09 -1.20 6.22 -27.49 -0.17 -1.37 16 25 C 0.07 0.73 6.79 37.46 0.25 0.98 16 26 O -0.37 -4.96 10.74 -35.23 -0.38 -5.34 16 27 C 0.14 1.82 7.13 36.07 0.26 2.07 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.02 0.33 6.45 -51.93 -0.34 -0.01 16 30 H 0.10 2.03 6.38 -51.93 -0.33 1.70 16 31 H 0.11 2.35 5.83 -51.93 -0.30 2.05 16 32 H 0.03 0.55 6.71 -51.93 -0.35 0.20 16 33 H 0.27 6.07 8.31 -40.82 -0.34 5.73 16 34 H 0.11 1.79 7.42 -51.93 -0.39 1.41 16 35 H 0.12 1.66 6.01 -51.93 -0.31 1.35 16 36 H 0.09 0.96 7.91 -51.93 -0.41 0.55 16 37 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 38 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 39 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.10 1.26 7.78 -51.93 -0.40 0.86 16 41 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 LS Contribution 351.55 15.07 5.30 5.30 Total: -1.00 -30.98 351.55 -5.22 -36.20 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -4.46 Total: 2.17 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: -1.27 Total: 9.98 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.41 Total: -40.00 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.29 Total: -21.03 kcal Atomic # 9 Polarization: -7.26 SS G_CDS: 0.12 Total: -7.15 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.04 Total: 14.53 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.98 -5.22 -36.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930619304.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.514 kcal (2) G-P(sol) polarization free energy of solvation -30.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds