Wall clock time and date at job start Wed Apr 1 2020 05:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34780 * 120.00203 * 2 1 4 4 O 1.21612 * 119.99744 * 185.12498 * 3 2 1 5 5 C 1.47399 * 120.00069 * 5.11780 * 3 2 1 6 6 C 1.37359 * 128.56190 * 33.13701 * 5 3 2 7 7 O 1.33492 * 106.34110 * 179.91357 * 6 5 3 8 8 N 1.20660 * 113.15576 * 0.38133 * 7 6 5 9 9 C 1.30016 * 112.30051 * 359.76518 * 8 7 6 10 10 C 1.50703 * 127.33576 * 179.97438 * 9 8 7 11 11 F 1.39898 * 109.47041 * 269.99752 * 10 9 8 12 12 F 1.39909 * 109.46874 * 29.99319 * 10 9 8 13 13 F 1.39897 * 109.47304 * 149.99501 * 10 9 8 14 14 C 1.46495 * 119.99986 * 179.97438 * 2 1 3 15 15 C 1.53048 * 109.46035 * 60.02949 * 14 2 1 16 16 C 1.53190 * 109.31325 * 178.60114 * 15 14 2 17 17 N 1.46923 * 108.76708 * 54.65592 * 16 15 14 18 18 C 1.36938 * 120.63200 * 126.40143 * 17 16 15 19 19 H 1.08000 * 119.99874 * 331.84702 * 18 17 16 20 20 C 1.38812 * 119.99869 * 151.84660 * 18 17 16 21 21 N 1.31619 * 120.00179 * 346.20633 * 20 18 17 22 22 Si 1.86799 * 120.00023 * 166.21155 * 20 18 17 23 23 H 1.48504 * 109.46941 * 59.99756 * 22 20 18 24 24 H 1.48497 * 109.47389 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47210 * 300.00111 * 22 20 18 26 26 C 1.46929 * 118.73950 * 306.38273 * 17 16 15 27 27 C 1.53040 * 109.46159 * 299.97456 * 14 2 1 28 28 H 1.08998 * 109.47135 * 275.04065 * 1 2 3 29 29 H 1.09005 * 109.47005 * 35.03936 * 1 2 3 30 30 H 1.08991 * 109.47190 * 155.03742 * 1 2 3 31 31 H 1.07998 * 126.82945 * 359.97438 * 6 5 3 32 32 H 1.09004 * 109.46610 * 180.02562 * 14 2 1 33 33 H 1.08999 * 109.49189 * 298.56950 * 15 14 2 34 34 H 1.09005 * 109.49598 * 58.66400 * 15 14 2 35 35 H 1.09000 * 109.59787 * 294.86876 * 16 15 14 36 36 H 1.08996 * 109.70030 * 174.50506 * 16 15 14 37 37 H 0.97003 * 120.00025 * 179.97438 * 21 20 18 38 38 H 1.08998 * 109.58665 * 293.82172 * 26 17 16 39 39 H 1.08998 * 109.70695 * 173.46368 * 26 17 16 40 40 H 1.08995 * 109.49799 * 301.33647 * 27 14 2 41 41 H 1.09003 * 109.49472 * 61.40514 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3514 1.1692 -0.0941 5 6 1.4064 2.4412 0.1139 6 6 0.2488 2.7045 0.8049 7 8 -0.0202 3.9972 0.6082 8 7 0.7889 4.5482 -0.0972 9 6 1.7310 3.7428 -0.4897 10 6 2.9053 4.0724 -1.3748 11 9 2.5556 3.8584 -2.7124 12 9 3.2630 5.4129 -1.1950 13 9 3.9874 3.2518 -1.0388 14 6 2.1974 -1.2687 0.0006 15 6 1.8281 -2.0713 -1.2492 16 6 2.6219 -3.3813 -1.2629 17 7 2.3848 -4.0910 0.0015 18 6 1.9517 -5.3901 0.0019 19 1 1.3625 -5.7631 -0.8227 20 6 2.2701 -6.2275 1.0623 21 7 3.1991 -5.8732 1.9247 22 14 1.3799 -7.8572 1.2652 23 1 1.6074 -8.6985 0.0628 24 1 1.9004 -8.5594 2.4657 25 1 -0.0752 -7.6095 1.4280 26 6 2.6216 -3.3805 1.2656 27 6 1.8280 -2.0702 1.2509 28 1 -0.3633 0.0903 1.0237 29 1 -0.3633 0.8415 -0.5901 30 1 -0.3633 -0.9316 -0.4337 31 1 -0.3282 2.0051 1.3916 32 1 3.2691 -1.0694 0.0009 33 1 0.7608 -2.2924 -1.2371 34 1 2.0698 -1.4903 -2.1392 35 1 3.6850 -3.1636 -1.3659 36 1 2.2934 -4.0013 -2.0970 37 1 3.4213 -6.4583 2.6658 38 1 3.6846 -3.1627 1.3687 39 1 2.2923 -3.9977 2.1014 40 1 2.0696 -1.4885 2.1404 41 1 0.7606 -2.2909 1.2393 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005714642.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:10 Heat of formation + Delta-G solvation = -83.439872 kcal Electronic energy + Delta-G solvation = -31641.520289 eV Core-core repulsion = 26725.532356 eV Total energy + Delta-G solvation = -4915.987934 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.41199 -47.99530 -47.82450 -45.75628 -40.12150 -37.55193 -35.37878 -34.77707 -33.17415 -32.14568 -30.29393 -29.64844 -27.66998 -27.26219 -25.82119 -24.45041 -22.42121 -22.26043 -22.14283 -20.27125 -19.26539 -19.03528 -18.91564 -18.53115 -18.22846 -17.61358 -16.86418 -16.56910 -16.08932 -15.41411 -14.93837 -14.85743 -14.79201 -14.54177 -14.32682 -14.08623 -13.98486 -13.92288 -13.68882 -13.56808 -13.17493 -13.10985 -12.79945 -12.69082 -12.55755 -12.49480 -12.22663 -11.57176 -11.26822 -11.14344 -10.91683 -10.77822 -10.52768 -10.36029 -10.29184 -10.13988 -10.08515 -9.80466 -9.66225 -8.67404 -8.46044 -6.74561 -5.83716 -3.28719 0.54440 0.75704 1.87938 2.23235 2.58949 2.89716 3.05120 3.31057 3.34292 3.40276 3.40686 3.98423 4.05504 4.09813 4.28383 4.43979 4.51702 4.80991 4.90143 5.13045 5.22205 5.35476 5.41254 5.48636 5.52023 5.75104 5.97075 6.09907 6.20578 6.39557 6.44570 6.51618 6.68861 6.74045 6.87617 7.23291 7.28444 7.31079 7.62012 7.72939 7.95620 8.39646 9.15603 9.77866 10.34109 11.24479 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.023898 B = 0.002603 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.359544 B =10752.341469 C =11226.059913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.596 5.596 3 C 0.579 3.421 4 O -0.507 6.507 5 C -0.197 4.197 6 C -0.002 4.002 7 O 0.132 5.868 8 N -0.297 5.297 9 C -0.043 4.043 10 C 0.554 3.446 11 F -0.166 7.166 12 F -0.167 7.167 13 F -0.135 7.135 14 C 0.146 3.854 15 C -0.138 4.138 16 C 0.147 3.853 17 N -0.593 5.593 18 C -0.254 4.254 19 H 0.066 0.934 20 C 0.003 3.997 21 N -0.905 5.905 22 Si 0.905 3.095 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.172 3.828 27 C -0.145 4.145 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.242 0.758 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.021 0.979 36 H 0.058 0.942 37 H 0.255 0.745 38 H 0.020 0.980 39 H 0.096 0.904 40 H 0.051 0.949 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.373 19.235 -2.683 21.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.328 5.328 3 C 0.364 3.636 4 O -0.382 6.382 5 C -0.205 4.205 6 C -0.083 4.083 7 O 0.059 5.941 8 N 0.007 4.993 9 C -0.206 4.206 10 C 0.499 3.501 11 F -0.147 7.147 12 F -0.148 7.148 13 F -0.116 7.116 14 C 0.045 3.955 15 C -0.179 4.179 16 C 0.020 3.980 17 N -0.315 5.315 18 C -0.383 4.383 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.549 5.549 22 Si 0.735 3.265 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.046 3.954 27 C -0.185 4.185 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.258 0.742 32 H 0.117 0.883 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.039 0.961 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.039 0.961 39 H 0.114 0.886 40 H 0.070 0.930 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.834 20.414 -2.857 22.052 hybrid contribution -0.150 -1.501 0.128 1.514 sum -7.984 18.914 -2.729 20.710 Atomic orbital electron populations 1.22005 0.80068 1.04192 1.01443 1.48032 1.07003 1.05906 1.71853 1.16852 0.86721 0.81748 0.78236 1.90903 1.12584 1.86301 1.48431 1.22319 0.98276 0.95311 1.04638 1.26810 0.96026 0.85756 0.99661 1.84624 1.39899 1.21017 1.48606 1.73716 0.99891 1.20226 1.05490 1.24665 0.99130 0.91781 1.05027 1.16638 0.80999 0.74968 0.77534 1.93261 1.92050 1.94551 1.34836 1.93251 1.92478 1.34008 1.95095 1.93435 1.54947 1.71374 1.91821 1.21347 0.97339 0.80025 0.96800 1.22390 1.01428 0.98145 0.95890 1.20868 0.95895 0.90815 0.90405 1.44088 1.77751 1.10276 0.99414 1.19152 1.26102 0.86513 1.06556 0.91640 1.25083 0.97133 0.97776 0.99609 1.69974 1.30516 1.37714 1.16695 0.86333 0.79334 0.83548 0.77297 1.20878 1.21604 1.21033 1.20820 0.95297 0.88513 0.90800 1.22599 1.01791 0.99069 0.95060 0.92304 0.91610 0.89297 0.74188 0.88291 0.91951 0.92754 0.96078 0.92344 0.93465 0.96148 0.88565 0.92998 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.56 8.12 59.84 0.49 1.04 16 2 N -0.60 -7.63 2.76 -175.17 -0.48 -8.11 16 3 C 0.58 8.11 7.60 -12.53 -0.10 8.01 16 4 O -0.51 -9.05 13.69 5.27 0.07 -8.98 16 5 C -0.20 -2.16 5.60 -102.90 -0.58 -2.73 16 6 C 0.00 -0.01 10.32 30.41 0.31 0.30 16 7 O 0.13 1.04 11.06 18.65 0.21 1.25 16 8 N -0.30 -3.19 11.98 34.78 0.42 -2.77 16 9 C -0.04 -0.51 6.86 -79.77 -0.55 -1.06 16 10 C 0.55 7.10 3.57 36.01 0.13 7.23 16 11 F -0.17 -2.10 17.30 2.25 0.04 -2.06 16 12 F -0.17 -2.06 17.28 2.25 0.04 -2.02 16 13 F -0.13 -2.01 14.39 2.25 0.03 -1.97 16 14 C 0.15 2.35 2.47 -67.89 -0.17 2.18 16 15 C -0.14 -2.24 5.32 -26.61 -0.14 -2.38 16 16 C 0.15 2.94 6.52 -3.71 -0.02 2.92 16 17 N -0.59 -14.09 3.00 -172.32 -0.52 -14.61 16 18 C -0.25 -6.65 9.60 -15.06 -0.14 -6.79 16 19 H 0.07 1.68 7.87 -52.49 -0.41 1.26 16 20 C 0.00 0.07 5.00 -17.43 -0.09 -0.02 16 21 N -0.90 -25.40 10.99 55.49 0.61 -24.79 16 22 Si 0.91 20.92 29.58 -169.99 -5.03 15.89 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.17 3.89 5.29 -3.71 -0.02 3.87 16 27 C -0.15 -2.51 5.34 -26.61 -0.14 -2.65 16 28 H 0.06 0.35 7.05 -51.93 -0.37 -0.02 16 29 H 0.07 0.43 6.49 -51.93 -0.34 0.09 16 30 H 0.09 0.81 6.46 -51.93 -0.34 0.48 16 31 H 0.24 0.56 6.39 -52.49 -0.34 0.22 16 32 H 0.10 1.85 6.91 -51.93 -0.36 1.49 16 33 H 0.06 0.97 6.72 -51.93 -0.35 0.62 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 1.14 7.93 -51.93 -0.41 0.72 16 37 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.10 2.44 5.95 -51.93 -0.31 2.13 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.98 7.72 -51.93 -0.40 0.58 16 LS Contribution 345.34 15.07 5.20 5.20 Total: -1.00 -31.59 345.34 -4.87 -36.46 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -4.44 Total: -3.41 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -1.02 Total: 9.92 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.03 Total: -50.28 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.28 Total: -7.73 kcal Atomic # 9 Polarization: -6.17 SS G_CDS: 0.11 Total: -6.06 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.59 -4.87 -36.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005714642.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.977 kcal (2) G-P(sol) polarization free energy of solvation -31.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds