Wall clock time and date at job start Wed Apr 1 2020 05:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34780 * 120.00203 * 2 1 4 4 O 1.21612 * 119.99744 * 185.12498 * 3 2 1 5 5 C 1.47399 * 120.00069 * 5.11780 * 3 2 1 6 6 C 1.37359 * 128.56190 * 33.13701 * 5 3 2 7 7 O 1.33492 * 106.34110 * 179.91357 * 6 5 3 8 8 N 1.20660 * 113.15576 * 0.38133 * 7 6 5 9 9 C 1.30016 * 112.30051 * 359.76518 * 8 7 6 10 10 C 1.50703 * 127.33576 * 179.97438 * 9 8 7 11 11 F 1.39898 * 109.47041 * 269.99752 * 10 9 8 12 12 F 1.39909 * 109.46874 * 29.99319 * 10 9 8 13 13 F 1.39897 * 109.47304 * 149.99501 * 10 9 8 14 14 C 1.46495 * 119.99986 * 179.97438 * 2 1 3 15 15 C 1.53048 * 109.46035 * 60.02949 * 14 2 1 16 16 C 1.53190 * 109.31325 * 178.60114 * 15 14 2 17 17 N 1.46923 * 108.76708 * 54.65592 * 16 15 14 18 18 C 1.36938 * 120.63200 * 126.40143 * 17 16 15 19 19 H 1.08000 * 119.99874 * 331.84702 * 18 17 16 20 20 C 1.38812 * 119.99869 * 151.84660 * 18 17 16 21 21 N 1.31619 * 120.00179 * 346.20633 * 20 18 17 22 22 Si 1.86799 * 120.00023 * 166.21155 * 20 18 17 23 23 H 1.48504 * 109.46941 * 59.99756 * 22 20 18 24 24 H 1.48497 * 109.47389 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47210 * 300.00111 * 22 20 18 26 26 C 1.46929 * 118.73950 * 306.38273 * 17 16 15 27 27 C 1.53040 * 109.46159 * 299.97456 * 14 2 1 28 28 H 1.08998 * 109.47135 * 275.04065 * 1 2 3 29 29 H 1.09005 * 109.47005 * 35.03936 * 1 2 3 30 30 H 1.08991 * 109.47190 * 155.03742 * 1 2 3 31 31 H 1.07998 * 126.82945 * 359.97438 * 6 5 3 32 32 H 1.09004 * 109.46610 * 180.02562 * 14 2 1 33 33 H 1.08999 * 109.49189 * 298.56950 * 15 14 2 34 34 H 1.09005 * 109.49598 * 58.66400 * 15 14 2 35 35 H 1.09000 * 109.59787 * 294.86876 * 16 15 14 36 36 H 1.08996 * 109.70030 * 174.50506 * 16 15 14 37 37 H 0.97003 * 120.00025 * 179.97438 * 21 20 18 38 38 H 1.08998 * 109.58665 * 293.82172 * 26 17 16 39 39 H 1.08998 * 109.70695 * 173.46368 * 26 17 16 40 40 H 1.08995 * 109.49799 * 301.33647 * 27 14 2 41 41 H 1.09003 * 109.49472 * 61.40514 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3514 1.1692 -0.0941 5 6 1.4064 2.4412 0.1139 6 6 0.2488 2.7045 0.8049 7 8 -0.0202 3.9972 0.6082 8 7 0.7889 4.5482 -0.0972 9 6 1.7310 3.7428 -0.4897 10 6 2.9053 4.0724 -1.3748 11 9 2.5556 3.8584 -2.7124 12 9 3.2630 5.4129 -1.1950 13 9 3.9874 3.2518 -1.0388 14 6 2.1974 -1.2687 0.0006 15 6 1.8281 -2.0713 -1.2492 16 6 2.6219 -3.3813 -1.2629 17 7 2.3848 -4.0910 0.0015 18 6 1.9517 -5.3901 0.0019 19 1 1.3625 -5.7631 -0.8227 20 6 2.2701 -6.2275 1.0623 21 7 3.1991 -5.8732 1.9247 22 14 1.3799 -7.8572 1.2652 23 1 1.6074 -8.6985 0.0628 24 1 1.9004 -8.5594 2.4657 25 1 -0.0752 -7.6095 1.4280 26 6 2.6216 -3.3805 1.2656 27 6 1.8280 -2.0702 1.2509 28 1 -0.3633 0.0903 1.0237 29 1 -0.3633 0.8415 -0.5901 30 1 -0.3633 -0.9316 -0.4337 31 1 -0.3282 2.0051 1.3916 32 1 3.2691 -1.0694 0.0009 33 1 0.7608 -2.2924 -1.2371 34 1 2.0698 -1.4903 -2.1392 35 1 3.6850 -3.1636 -1.3659 36 1 2.2934 -4.0013 -2.0970 37 1 3.4213 -6.4583 2.6658 38 1 3.6846 -3.1627 1.3687 39 1 2.2923 -3.9977 2.1014 40 1 2.0696 -1.4885 2.1404 41 1 0.7606 -2.2909 1.2393 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005714642.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:10 Heat of formation + Delta-G solvation = -103.380979 kcal Electronic energy + Delta-G solvation = -31642.385001 eV Core-core repulsion = 26725.532356 eV Total energy + Delta-G solvation = -4916.852645 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.41075 -48.97478 -48.87013 -46.52722 -41.22670 -39.01362 -36.67676 -35.61302 -34.49846 -33.39263 -31.83966 -31.28187 -28.60866 -28.08554 -27.26749 -25.74131 -23.85907 -23.58284 -23.22038 -21.40058 -20.54602 -19.97221 -19.90468 -19.53223 -19.05969 -18.78523 -18.40624 -17.63851 -17.13441 -16.76340 -16.35990 -15.85888 -15.78336 -15.69554 -15.41630 -15.33028 -15.27308 -15.02879 -15.01262 -14.84103 -14.59641 -14.30589 -14.14516 -13.89516 -13.64534 -13.31731 -13.18150 -13.02271 -12.93011 -12.57172 -12.52811 -12.10499 -12.02304 -11.98940 -11.86770 -11.46479 -11.37722 -11.21182 -10.99755 -10.53892 -9.67748 -8.68702 -7.84471 -5.32582 -0.14094 -0.03496 1.01027 1.44178 1.51490 1.52441 1.59647 1.68957 1.99445 2.15029 2.44375 2.53799 3.01205 3.19947 3.25632 3.31916 3.57048 3.66582 3.69842 3.93347 4.06530 4.21547 4.31253 4.36860 4.48949 4.63834 4.68486 4.73308 4.89158 4.95722 5.05393 5.07814 5.16115 5.31367 5.48292 5.54267 5.66158 5.76085 6.26743 6.41544 6.61751 6.94606 7.16825 7.86356 8.38450 9.21694 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.023898 B = 0.002603 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.359544 B =10752.341469 C =11226.059913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.591 5.591 3 C 0.579 3.421 4 O -0.559 6.559 5 C -0.226 4.226 6 C 0.050 3.950 7 O 0.154 5.846 8 N -0.307 5.307 9 C -0.064 4.064 10 C 0.551 3.449 11 F -0.168 7.168 12 F -0.168 7.168 13 F -0.152 7.152 14 C 0.156 3.844 15 C -0.122 4.122 16 C 0.143 3.857 17 N -0.609 5.609 18 C -0.261 4.261 19 H 0.071 0.929 20 C -0.051 4.051 21 N -0.939 5.939 22 Si 0.970 3.030 23 H -0.279 1.279 24 H -0.298 1.298 25 H -0.272 1.272 26 C 0.178 3.822 27 C -0.125 4.125 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.293 0.707 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.004 0.996 36 H 0.062 0.938 37 H 0.250 0.750 38 H -0.014 1.014 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.073 20.168 -2.441 23.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.322 5.322 3 C 0.366 3.634 4 O -0.438 6.438 5 C -0.235 4.235 6 C -0.030 4.030 7 O 0.078 5.922 8 N 0.000 5.000 9 C -0.225 4.225 10 C 0.495 3.505 11 F -0.150 7.150 12 F -0.149 7.149 13 F -0.133 7.133 14 C 0.053 3.947 15 C -0.162 4.162 16 C 0.016 3.984 17 N -0.332 5.332 18 C -0.391 4.391 19 H 0.089 0.911 20 C -0.246 4.246 21 N -0.585 5.585 22 Si 0.798 3.202 23 H -0.205 1.205 24 H -0.224 1.224 25 H -0.198 1.198 26 C 0.051 3.949 27 C -0.165 4.165 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.308 0.692 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.022 0.978 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.004 0.996 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.574 21.393 -2.658 24.468 hybrid contribution 0.994 -1.756 0.031 2.018 sum -10.580 19.637 -2.627 22.460 Atomic orbital electron populations 1.22442 0.76770 1.05346 1.04390 1.47886 1.08814 1.04175 1.71307 1.17169 0.86258 0.82778 0.77163 1.90885 1.15018 1.87089 1.50762 1.21943 1.00339 0.93646 1.07570 1.27612 0.93719 0.85133 0.96507 1.84634 1.38706 1.21538 1.47298 1.73740 0.99938 1.20475 1.05894 1.24527 0.99309 0.92711 1.05984 1.16793 0.81230 0.74674 0.77794 1.93246 1.92008 1.94560 1.35141 1.93240 1.92586 1.33988 1.95106 1.93399 1.56012 1.71911 1.91977 1.20874 0.96145 0.81575 0.96057 1.22170 1.01566 0.95916 0.96523 1.20993 0.95704 0.92610 0.89052 1.44343 1.77886 1.10167 1.00821 1.19524 1.25527 0.87588 1.06451 0.91095 1.25845 0.98028 1.01096 0.99673 1.70161 1.32259 1.38808 1.17259 0.85305 0.78561 0.79591 0.76729 1.20478 1.22408 1.19795 1.20594 0.94074 0.90575 0.89631 1.22288 1.01569 0.96304 0.96298 0.88609 0.89015 0.89512 0.69192 0.91630 0.90163 0.91438 0.97802 0.91932 0.94128 0.99630 0.91547 0.91815 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.60 8.12 127.77 1.04 1.64 16 2 N -0.59 -13.52 2.76 -826.35 -2.28 -15.80 16 3 C 0.58 15.32 7.60 86.66 0.66 15.98 16 4 O -0.56 -20.35 13.69 -4.07 -0.06 -20.41 16 5 C -0.23 -4.31 5.60 -18.75 -0.10 -4.41 16 6 C 0.05 0.40 10.32 67.61 0.70 1.10 16 7 O 0.15 1.75 11.06 77.00 0.85 2.61 16 8 N -0.31 -5.77 11.98 -44.78 -0.54 -6.30 16 9 C -0.06 -1.42 6.86 45.16 0.31 -1.11 16 10 C 0.55 14.18 3.57 71.24 0.25 14.43 16 11 F -0.17 -4.28 17.30 44.97 0.78 -3.50 16 12 F -0.17 -4.18 17.28 44.97 0.78 -3.40 16 13 F -0.15 -4.71 14.39 44.97 0.65 -4.06 16 14 C 0.16 4.88 2.47 45.02 0.11 4.99 16 15 C -0.12 -3.76 5.32 30.67 0.16 -3.60 16 16 C 0.14 5.73 6.52 86.36 0.56 6.29 16 17 N -0.61 -29.31 3.00 -699.10 -2.10 -31.40 16 18 C -0.26 -13.71 9.60 84.03 0.81 -12.90 16 19 H 0.07 3.58 7.87 -2.91 -0.02 3.56 16 20 C -0.05 -2.77 5.00 84.86 0.42 -2.35 16 21 N -0.94 -54.34 10.99 21.65 0.24 -54.11 16 22 Si 0.97 43.15 29.58 68.60 2.03 45.18 16 23 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 24 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 26 C 0.18 8.24 5.29 86.36 0.46 8.70 16 27 C -0.12 -4.17 5.34 30.67 0.16 -4.01 16 28 H 0.10 0.46 7.05 -2.39 -0.02 0.44 16 29 H 0.09 0.64 6.49 -2.38 -0.02 0.62 16 30 H 0.09 1.14 6.46 -2.39 -0.02 1.12 16 31 H 0.29 -0.96 6.39 -2.91 -0.02 -0.98 16 32 H 0.07 2.53 6.91 -2.39 -0.02 2.51 16 33 H 0.08 2.23 6.72 -2.39 -0.02 2.21 16 34 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.06 2.41 7.93 -2.39 -0.02 2.39 16 37 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 38 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 39 H 0.07 3.48 5.95 -2.39 -0.01 3.47 16 40 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.08 2.32 7.72 -2.39 -0.02 2.30 16 Total: -1.00 -74.20 345.34 6.99 -67.21 By element: Atomic # 1 Polarization: -1.86 SS G_CDS: 1.10 Total: -0.77 kcal Atomic # 6 Polarization: 19.21 SS G_CDS: 5.54 Total: 24.75 kcal Atomic # 7 Polarization: -102.94 SS G_CDS: -4.68 Total: -107.61 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: 0.80 Total: -17.80 kcal Atomic # 9 Polarization: -13.16 SS G_CDS: 2.20 Total: -10.96 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -74.20 6.99 -67.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005714642.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.175 kcal (2) G-P(sol) polarization free energy of solvation -74.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds