Wall clock time and date at job start Wed Apr 1 2020 05:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34777 * 119.99649 * 2 1 4 4 O 1.21572 * 119.99458 * 184.90946 * 3 2 1 5 5 C 1.47707 * 120.00191 * 4.91464 * 3 2 1 6 6 C 1.39990 * 119.96478 * 140.63601 * 5 3 2 7 7 C 1.36600 * 120.46117 * 179.97438 * 6 5 3 8 8 C 1.38808 * 120.20815 * 0.25172 * 7 6 5 9 9 O 1.35179 * 133.64863 * 180.39925 * 8 7 6 10 10 C 1.34387 * 108.24864 * 179.52802 * 9 8 7 11 11 O 1.35179 * 124.91193 * 179.74066 * 10 9 8 12 12 N 1.30592 * 110.17971 * 359.76623 * 10 9 8 13 13 C 1.36211 * 108.67983 * 359.97438 * 12 10 9 14 14 C 1.39215 * 133.66805 * 180.02562 * 13 12 10 15 15 C 1.46503 * 120.00068 * 179.97438 * 2 1 3 16 16 H 1.09000 * 110.88658 * 180.70415 * 15 2 1 17 17 C 1.54917 * 111.00300 * 304.58555 * 15 2 1 18 18 N 1.47417 * 104.82843 * 155.08443 * 17 15 2 19 19 C 1.36942 * 125.64473 * 155.83564 * 18 17 15 20 20 H 1.07999 * 120.00203 * 359.97438 * 19 18 17 21 21 C 1.38820 * 119.99992 * 179.97438 * 19 18 17 22 22 N 1.31624 * 119.99708 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00129 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47156 * 89.99967 * 23 21 19 25 25 H 1.48501 * 109.47001 * 210.00082 * 23 21 19 26 26 H 1.48499 * 109.46841 * 329.99854 * 23 21 19 27 27 C 1.47017 * 108.70863 * 335.86880 * 18 17 15 28 28 C 1.54377 * 107.28639 * 1.09393 * 27 18 17 29 29 H 1.08993 * 110.70222 * 263.79495 * 28 27 18 30 30 O 1.42902 * 110.75512 * 140.50348 * 28 27 18 31 31 H 1.09004 * 109.46685 * 85.37871 * 1 2 3 32 32 H 1.09003 * 109.47094 * 205.36891 * 1 2 3 33 33 H 1.08989 * 109.47316 * 325.37446 * 1 2 3 34 34 H 1.08002 * 119.77205 * 0.02562 * 6 5 3 35 35 H 1.08000 * 119.89691 * 179.97438 * 7 6 5 36 36 H 0.96696 * 113.99941 * 270.03105 * 11 10 9 37 37 H 1.08003 * 120.27144 * 359.97438 * 14 13 12 38 38 H 1.09004 * 110.36301 * 273.91994 * 17 15 2 39 39 H 1.08997 * 110.36543 * 36.13289 * 17 15 2 40 40 H 0.96996 * 120.00100 * 180.02562 * 22 21 19 41 41 H 1.09002 * 109.88705 * 120.47727 * 27 18 17 42 42 H 1.09002 * 109.88604 * 241.64610 * 27 18 17 43 43 H 0.96698 * 113.99518 * 66.48718 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3512 1.1691 -0.0901 5 6 1.4044 2.4441 0.1096 6 6 1.9243 3.4852 0.8877 7 6 1.2537 4.6704 0.9957 8 6 0.0452 4.8516 0.3374 9 8 -0.8236 5.8835 0.2490 10 6 -1.8421 5.5093 -0.5438 11 8 -2.9041 6.2848 -0.8569 12 7 -1.6579 4.2879 -0.9676 13 6 -0.4873 3.8193 -0.4525 14 6 0.1964 2.6116 -0.5631 15 6 2.1976 -1.2687 0.0006 16 1 3.2737 -1.0961 0.0130 17 6 1.7643 -2.1595 1.1916 18 7 2.0617 -3.5374 0.7601 19 6 2.2927 -4.6015 1.5905 20 1 2.2651 -4.4665 2.6617 21 6 2.5623 -5.8538 1.0555 22 7 2.5965 -6.0182 -0.2500 23 14 2.8767 -7.3054 2.1883 24 1 1.5914 -7.9853 2.4899 25 1 3.7984 -8.2614 1.5236 26 1 3.4901 -6.8234 3.4518 27 6 2.0701 -3.5798 -0.7095 28 6 1.7892 -2.1472 -1.2114 29 1 0.7313 -2.0199 -1.4409 30 8 2.5956 -1.8426 -2.3511 31 1 -0.3633 0.0828 -1.0244 32 1 -0.3633 -0.9286 0.4403 33 1 -0.3633 0.8456 0.5839 34 1 2.8624 3.3508 1.4055 35 1 1.6630 5.4674 1.5988 36 1 -3.6470 6.2007 -0.2437 37 1 -0.2074 1.8104 -1.1643 38 1 2.3401 -1.9083 2.0824 39 1 0.6979 -2.0425 1.3846 40 1 2.7845 -6.8932 -0.6238 41 1 3.0455 -3.9119 -1.0653 42 1 1.2933 -4.2566 -1.0653 43 1 2.3804 -2.3648 -3.1360 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047417043.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:13 Heat of formation + Delta-G solvation = -21.064100 kcal Electronic energy + Delta-G solvation = -30288.590134 eV Core-core repulsion = 25917.163757 eV Total energy + Delta-G solvation = -4371.426377 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -43.71153 -40.42551 -38.76585 -38.14094 -37.32276 -35.34777 -35.06417 -34.85361 -32.20427 -31.14541 -29.85879 -28.53832 -27.40304 -26.89774 -24.96707 -24.12079 -23.58414 -22.40248 -21.19702 -20.44792 -19.84571 -19.32994 -18.52688 -17.81966 -17.36994 -17.15916 -16.92470 -16.35611 -15.80700 -15.38740 -15.34385 -15.04821 -14.75813 -14.25008 -14.15909 -14.05758 -13.39170 -13.29941 -13.08337 -12.87169 -12.86794 -12.68452 -12.41670 -12.14843 -12.02165 -11.80304 -11.68382 -11.46945 -11.25491 -10.95122 -10.89011 -10.81270 -10.18858 -9.98089 -9.91526 -9.85891 -9.30140 -9.18206 -8.92696 -8.74886 -8.44298 -6.95359 -5.79425 -3.15002 0.16570 0.45542 1.40992 1.84731 2.59669 2.87220 3.00167 3.34286 3.36631 3.41914 3.43980 3.95457 4.19832 4.42004 4.52130 4.59033 4.69048 4.74118 4.79915 5.04980 5.13110 5.18031 5.34202 5.42300 5.51439 5.55824 5.59515 5.60736 5.70899 5.72196 5.80960 5.83318 6.00671 6.06017 6.10300 6.41934 6.51967 6.52458 6.80819 7.01843 7.32274 7.42242 7.46668 7.70749 8.12563 8.17878 8.18548 9.10891 9.71053 10.33659 11.31865 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.022700 B = 0.002258 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.178764 B =12396.086195 C =12477.292947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.591 5.591 3 C 0.561 3.439 4 O -0.524 6.524 5 C -0.116 4.116 6 C -0.038 4.038 7 C -0.094 4.094 8 C 0.035 3.965 9 O -0.225 6.225 10 C 0.416 3.584 11 O -0.407 6.407 12 N -0.456 5.456 13 C 0.022 3.978 14 C -0.029 4.029 15 C 0.133 3.867 16 H 0.117 0.883 17 C 0.131 3.869 18 N -0.599 5.599 19 C -0.231 4.231 20 H 0.081 0.919 21 C -0.006 4.006 22 N -0.922 5.922 23 Si 0.916 3.084 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.153 3.847 28 C 0.066 3.934 29 H 0.056 0.944 30 O -0.560 6.560 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.154 0.846 35 H 0.145 0.855 36 H 0.421 0.579 37 H 0.154 0.846 38 H 0.049 0.951 39 H 0.027 0.973 40 H 0.254 0.746 41 H 0.061 0.939 42 H 0.048 0.952 43 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.529 22.488 0.695 24.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.323 5.323 3 C 0.348 3.652 4 O -0.400 6.400 5 C -0.120 4.120 6 C -0.057 4.057 7 C -0.113 4.113 8 C -0.015 4.015 9 O -0.118 6.118 10 C 0.165 3.835 11 O -0.215 6.215 12 N -0.198 5.198 13 C -0.090 4.090 14 C -0.048 4.048 15 C 0.029 3.971 16 H 0.135 0.865 17 C 0.004 3.996 18 N -0.326 5.326 19 C -0.359 4.359 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.569 5.569 23 Si 0.746 3.254 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.027 3.973 28 C 0.005 3.995 29 H 0.074 0.926 30 O -0.364 6.364 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.171 0.829 35 H 0.163 0.837 36 H 0.282 0.718 37 H 0.171 0.829 38 H 0.068 0.932 39 H 0.045 0.955 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -9.683 22.601 0.197 24.589 hybrid contribution -0.432 -0.729 0.811 1.173 sum -10.115 21.872 1.008 24.119 Atomic orbital electron populations 1.22219 0.79921 1.04232 1.01623 1.47648 1.06859 1.05781 1.72000 1.18010 0.87031 0.83037 0.77079 1.90824 1.13289 1.86798 1.49131 1.19872 0.95208 0.95881 1.01087 1.20819 0.99104 0.90058 0.95748 1.19561 0.90913 0.99162 1.01642 1.20234 0.93925 0.85571 1.01767 1.84470 1.30104 1.39750 1.57517 1.22437 0.86089 0.85794 0.89147 1.84924 1.22266 1.62873 1.51460 1.71092 1.16950 1.06460 1.25346 1.19418 0.93249 0.96401 0.99958 1.20871 0.91796 0.94818 0.97332 1.22474 0.98516 0.80800 0.95264 0.86470 1.21791 0.97729 0.85616 0.94473 1.44230 1.83539 1.03126 1.01727 1.19063 1.41741 0.86127 0.89007 0.90113 1.24835 1.01601 0.97723 0.96117 1.69933 1.55137 1.22589 1.09215 0.86064 0.77668 0.82213 0.79468 1.21533 1.21590 1.20578 1.21857 1.01941 0.89362 0.84130 1.23551 0.92825 0.97328 0.85796 0.92613 1.86507 1.62348 1.65507 1.22070 0.92167 0.89569 0.90730 0.82872 0.83749 0.71848 0.82850 0.93231 0.95537 0.93582 0.92105 0.93362 0.77944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.71 7.64 59.85 0.46 1.17 16 2 N -0.59 -8.92 2.91 -172.63 -0.50 -9.43 16 3 C 0.56 8.69 7.34 -12.39 -0.09 8.60 16 4 O -0.52 -10.07 16.30 5.30 0.09 -9.98 16 5 C -0.12 -1.39 5.23 -104.99 -0.55 -1.94 16 6 C -0.04 -0.38 9.55 -39.52 -0.38 -0.76 16 7 C -0.09 -0.81 9.99 -39.96 -0.40 -1.21 16 8 C 0.04 0.37 7.42 -38.53 -0.29 0.08 16 9 O -0.22 -2.21 10.78 -20.28 -0.22 -2.43 16 10 C 0.42 3.84 9.53 52.24 0.50 4.34 16 11 O -0.41 -2.36 13.62 -40.52 -0.55 -2.91 16 12 N -0.46 -5.14 11.38 -12.82 -0.15 -5.29 16 13 C 0.02 0.24 7.22 -84.72 -0.61 -0.37 16 14 C -0.03 -0.32 7.61 -38.83 -0.30 -0.62 16 15 C 0.13 2.48 3.17 -65.78 -0.21 2.28 16 16 H 0.12 2.54 7.02 -51.93 -0.36 2.17 16 17 C 0.13 2.63 6.78 -2.53 -0.02 2.61 16 18 N -0.60 -14.84 3.39 -170.04 -0.58 -15.42 16 19 C -0.23 -6.28 10.28 -15.05 -0.15 -6.44 16 20 H 0.08 2.11 7.83 -52.49 -0.41 1.69 16 21 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 22 N -0.92 -26.42 10.31 55.49 0.57 -25.84 16 23 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 C 0.15 3.59 5.15 -3.04 -0.02 3.57 16 28 C 0.07 1.23 3.91 -24.87 -0.10 1.13 16 29 H 0.06 0.94 7.21 -51.93 -0.37 0.56 16 30 O -0.56 -10.31 13.39 -35.23 -0.47 -10.78 16 31 H 0.06 0.60 6.88 -51.93 -0.36 0.24 16 32 H 0.09 1.00 6.15 -51.93 -0.32 0.68 16 33 H 0.07 0.71 5.83 -51.94 -0.30 0.41 16 34 H 0.15 1.37 8.05 -52.49 -0.42 0.95 16 35 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 36 H 0.42 -0.15 9.06 45.56 0.41 0.26 16 37 H 0.15 1.56 5.30 -52.48 -0.28 1.28 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.03 0.50 6.13 -51.93 -0.32 0.18 16 40 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.06 1.63 7.30 -51.93 -0.38 1.25 16 42 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 43 H 0.37 5.29 9.12 45.56 0.42 5.71 16 LS Contribution 357.17 15.07 5.38 5.38 Total: -1.00 -36.15 357.17 -6.76 -42.91 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -3.07 Total: 4.95 kcal Atomic # 6 Polarization: 14.42 SS G_CDS: -2.24 Total: 12.17 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.65 Total: -55.98 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -1.16 Total: -26.11 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.15 -6.76 -42.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047417043.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.851 kcal (2) G-P(sol) polarization free energy of solvation -36.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds