Wall clock time and date at job start Wed Apr 1 2020 06:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99864 * 2 1 4 4 H 1.48506 * 109.46885 * 264.53169 * 3 2 1 5 5 H 1.48497 * 109.47481 * 24.53477 * 3 2 1 6 6 H 1.48501 * 109.46899 * 144.53550 * 3 2 1 7 7 C 1.38810 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00179 * 337.62874 * 7 2 1 9 9 N 1.36934 * 119.99786 * 157.61508 * 7 2 1 10 10 C 1.47421 * 125.65241 * 341.48739 * 9 7 2 11 11 C 1.55124 * 104.94313 * 204.03475 * 10 9 7 12 12 H 1.08998 * 110.94023 * 81.21311 * 11 10 9 13 13 O 1.42906 * 111.16196 * 205.12507 * 11 10 9 14 14 C 1.55158 * 101.48466 * 323.21707 * 11 10 9 15 15 H 1.09000 * 110.72005 * 276.82941 * 14 11 10 16 16 N 1.46500 * 110.71676 * 153.73664 * 14 11 10 17 17 C 1.34776 * 119.99432 * 157.44328 * 16 14 11 18 18 O 1.21275 * 120.00370 * 359.97438 * 17 16 14 19 19 C 1.50710 * 119.99572 * 179.97438 * 17 16 14 20 20 C 1.50699 * 109.46874 * 180.02562 * 19 17 16 21 21 C 1.34248 * 126.49342 * 265.02502 * 20 19 17 22 22 N 1.36817 * 109.92973 * 179.75549 * 21 20 19 23 23 H 0.96994 * 125.06545 * 180.27307 * 22 21 20 24 24 C 1.37815 * 109.85919 * 0.37635 * 22 21 20 25 25 C 1.39094 * 133.38838 * 179.91759 * 24 22 21 26 26 C 1.37713 * 119.95408 * 179.68396 * 25 24 22 27 27 C 1.39034 * 120.64628 * 0.02562 * 26 25 24 28 28 F 1.35097 * 119.83475 * 180.02562 * 27 26 25 29 29 C 1.37793 * 120.33444 * 0.02562 * 27 26 25 30 30 C 1.39670 * 119.62981 * 359.97438 * 29 27 26 31 31 C 1.47020 * 125.64727 * 161.52045 * 9 7 2 32 32 H 0.97000 * 120.00179 * 0.02562 * 1 2 3 33 33 H 1.09002 * 110.36442 * 322.99294 * 10 9 7 34 34 H 1.08996 * 110.37560 * 85.20506 * 10 9 7 35 35 H 0.96699 * 114.00130 * 292.16838 * 13 11 10 36 36 H 0.96996 * 120.00228 * 337.43904 * 16 14 11 37 37 H 1.08999 * 109.46676 * 59.99986 * 19 17 16 38 38 H 1.08998 * 109.46955 * 299.99812 * 19 17 16 39 39 H 1.08001 * 125.03319 * 0.02562 * 21 20 19 40 40 H 1.08002 * 120.02779 * 359.71286 * 25 24 22 41 41 H 1.07999 * 119.68012 * 179.97438 * 26 25 24 42 42 H 1.07999 * 120.18904 * 180.02562 * 29 27 26 43 43 H 1.08996 * 109.88602 * 59.49020 * 31 9 7 44 44 H 1.09003 * 110.00944 * 298.39813 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6132 1.9797 -1.3938 5 1 1.3947 2.6833 0.5813 6 1 3.4852 1.4762 0.8123 7 6 2.0103 -1.2021 0.0005 8 1 1.5313 -2.1020 0.3569 9 7 3.3022 -1.2470 -0.4511 10 6 3.9504 -0.2333 -1.3029 11 6 5.0993 -0.9892 -2.0204 12 1 4.7235 -1.5437 -2.8802 13 8 6.1432 -0.0934 -2.4079 14 6 5.5798 -1.9531 -0.9036 15 1 6.2743 -1.4491 -0.2315 16 7 6.1968 -3.1495 -1.4816 17 6 7.0645 -3.8791 -0.7528 18 8 7.3348 -3.5451 0.3813 19 6 7.6989 -5.1102 -1.3472 20 6 8.6208 -5.7391 -0.3345 21 6 9.9445 -5.5418 -0.2288 22 7 10.4439 -6.2765 0.8116 23 1 11.3743 -6.2942 1.0853 24 6 9.4283 -6.9895 1.4113 25 6 9.3859 -7.8732 2.4846 26 6 8.1883 -8.4378 2.8634 27 6 7.0148 -8.1344 2.1823 28 9 5.8489 -8.6973 2.5682 29 6 7.0349 -7.2623 1.1157 30 6 8.2425 -6.6822 0.7206 31 6 4.2725 -2.3144 -0.1673 32 1 -0.4850 0.8400 -0.0004 33 1 3.2410 0.1600 -2.0311 34 1 4.3529 0.5747 -0.6919 35 1 5.8897 0.5284 -3.1038 36 1 5.9809 -3.4165 -2.3888 37 1 8.2680 -4.8332 -2.2346 38 1 6.9213 -5.8229 -1.6221 39 1 10.5278 -4.8952 -0.8676 40 1 10.2913 -8.1160 3.0209 41 1 8.1605 -9.1237 3.6971 42 1 6.1219 -7.0279 0.5885 43 1 3.8923 -3.2680 -0.5334 44 1 4.4562 -2.3760 0.9054 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077736653.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:32:00 Heat of formation + Delta-G solvation = -35.566722 kcal Electronic energy + Delta-G solvation = -29837.177996 eV Core-core repulsion = 25477.495528 eV Total energy + Delta-G solvation = -4359.682468 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -48.82074 -41.52555 -39.69507 -38.07755 -36.79849 -35.38162 -34.08633 -33.30471 -31.93444 -30.60487 -29.12303 -28.96239 -27.83590 -26.93175 -24.18395 -23.30582 -22.12276 -21.29342 -21.17588 -20.06016 -19.54632 -18.25153 -17.48156 -17.37923 -17.17561 -16.65195 -16.43548 -15.97721 -15.58965 -15.48689 -15.04991 -14.79691 -14.49310 -14.32387 -14.06254 -13.79928 -13.47882 -13.41048 -13.15313 -13.12249 -12.99829 -12.79110 -12.62700 -12.30748 -11.95414 -11.88087 -11.47055 -11.39340 -11.25627 -11.00705 -10.85345 -10.47079 -10.07807 -10.02097 -9.80341 -9.56548 -9.42865 -8.91310 -8.66182 -8.34567 -7.87282 -7.11449 -5.98154 -3.29998 0.78791 1.24014 2.33773 2.81638 2.83806 3.29317 3.33099 3.46907 3.50942 3.58944 4.14827 4.21397 4.39941 4.51083 4.56643 4.66728 4.84221 4.88382 4.97389 5.00108 5.12075 5.20151 5.29779 5.31752 5.34171 5.39333 5.42328 5.54995 5.60759 5.81859 5.85246 5.87882 6.02697 6.07440 6.34365 6.38457 6.43893 6.48113 6.48427 6.63231 6.80733 6.87439 7.23956 7.60517 7.66793 7.78493 8.27035 8.41788 8.78372 9.63765 10.09044 11.17592 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.013998 B = 0.002666 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.778008 B =10500.688073 C =11925.233539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.023 3.977 3 Si 0.882 3.118 4 H -0.286 1.286 5 H -0.301 1.301 6 H -0.275 1.275 7 C -0.243 4.243 8 H 0.095 0.905 9 N -0.603 5.603 10 C 0.086 3.914 11 C 0.082 3.918 12 H 0.073 0.927 13 O -0.561 6.561 14 C 0.143 3.857 15 H 0.102 0.898 16 N -0.719 5.719 17 C 0.511 3.489 18 O -0.527 6.527 19 C -0.066 4.066 20 C -0.150 4.150 21 C 0.072 3.928 22 N -0.592 5.592 23 H 0.417 0.583 24 C 0.086 3.914 25 C -0.101 4.101 26 C -0.133 4.133 27 C 0.071 3.929 28 F -0.142 7.142 29 C -0.101 4.101 30 C -0.064 4.064 31 C 0.129 3.871 32 H 0.264 0.736 33 H 0.065 0.935 34 H 0.038 0.962 35 H 0.378 0.622 36 H 0.398 0.602 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.172 0.828 40 H 0.129 0.871 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.041 0.959 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.235 -14.923 -4.954 28.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.176 4.176 3 Si 0.712 3.288 4 H -0.213 1.213 5 H -0.228 1.228 6 H -0.201 1.201 7 C -0.370 4.370 8 H 0.113 0.887 9 N -0.332 5.332 10 C -0.041 4.041 11 C 0.021 3.979 12 H 0.091 0.909 13 O -0.366 6.366 14 C 0.038 3.962 15 H 0.120 0.880 16 N -0.371 5.371 17 C 0.297 3.703 18 O -0.402 6.402 19 C -0.106 4.106 20 C -0.157 4.157 21 C -0.054 4.054 22 N -0.195 5.195 23 H 0.254 0.746 24 C -0.021 4.021 25 C -0.122 4.122 26 C -0.153 4.153 27 C 0.050 3.950 28 F -0.121 7.121 29 C -0.120 4.120 30 C -0.069 4.069 31 C 0.002 3.998 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.055 0.945 35 H 0.225 0.775 36 H 0.232 0.768 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.189 0.811 40 H 0.147 0.853 41 H 0.155 0.845 42 H 0.152 0.848 43 H 0.059 0.941 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 23.614 -14.934 -3.577 28.169 hybrid contribution 0.118 1.239 -0.543 1.358 sum 23.733 -13.695 -4.120 27.709 Atomic orbital electron populations 1.69836 1.05508 1.26671 1.52939 1.25008 0.95191 0.97376 1.00001 0.87006 0.79362 0.84708 0.77723 1.21335 1.22849 1.20072 1.18659 0.83878 0.95672 1.38772 0.88709 1.44587 1.09858 1.22161 1.56575 1.22622 0.93757 0.93387 0.94302 1.23318 0.87672 0.90841 0.96020 0.90910 1.86472 1.38860 1.50842 1.60429 1.21944 0.95447 0.84167 0.94635 0.87972 1.45949 1.45686 1.27798 1.17651 1.20633 0.78894 0.84512 0.86292 1.90732 1.61333 1.70031 1.18148 1.19954 0.98596 0.94989 0.97088 1.19491 0.92839 1.03082 1.00302 1.21586 0.94412 0.97311 0.92132 1.41650 1.09527 1.39959 1.28371 0.74595 1.18203 0.88223 0.98248 0.97394 1.19778 0.98155 0.98013 0.96245 1.20729 0.90815 1.02468 1.01288 1.17288 0.81722 0.98470 0.97474 1.91492 1.46359 1.83641 1.90591 1.20430 0.97993 0.96780 0.96844 1.18677 0.91810 0.99181 0.97226 1.21721 0.87123 0.92930 0.97993 0.92608 0.91724 0.94497 0.77514 0.76751 0.88087 0.88051 0.81069 0.85342 0.84547 0.84790 0.94149 0.93971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.89 13.97 55.49 0.78 -27.11 16 2 C 0.02 0.67 5.43 -17.43 -0.09 0.58 16 3 Si 0.88 22.62 24.27 -169.99 -4.13 18.49 16 4 H -0.29 -6.88 6.49 56.52 0.37 -6.52 16 5 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 6 H -0.27 -7.13 6.66 56.52 0.38 -6.75 16 7 C -0.24 -6.93 10.57 -15.06 -0.16 -7.09 16 8 H 0.10 2.87 8.06 -52.49 -0.42 2.44 16 9 N -0.60 -14.67 3.21 -169.95 -0.54 -15.21 16 10 C 0.09 1.82 4.44 -2.41 -0.01 1.81 16 11 C 0.08 1.34 4.06 -24.47 -0.10 1.24 16 12 H 0.07 1.04 8.00 -51.93 -0.42 0.62 16 13 O -0.56 -8.25 13.48 -35.23 -0.47 -8.73 16 14 C 0.14 2.48 3.00 -66.10 -0.20 2.28 16 15 H 0.10 2.00 7.62 -51.93 -0.40 1.61 16 16 N -0.72 -9.52 5.12 -52.03 -0.27 -9.79 16 17 C 0.51 7.05 7.82 -10.98 -0.09 6.96 16 18 O -0.53 -9.75 15.72 5.56 0.09 -9.66 16 19 C -0.07 -0.61 6.23 -29.03 -0.18 -0.79 16 20 C -0.15 -1.62 4.81 -102.71 -0.49 -2.11 16 21 C 0.07 0.62 11.73 -16.73 -0.20 0.42 16 22 N -0.59 -4.71 6.08 -10.64 -0.06 -4.77 16 23 H 0.42 1.88 8.96 -40.82 -0.37 1.51 16 24 C 0.09 0.90 7.27 -83.95 -0.61 0.29 16 25 C -0.10 -0.92 10.06 -39.46 -0.40 -1.32 16 26 C -0.13 -1.34 9.99 -39.48 -0.39 -1.73 16 27 C 0.07 0.87 7.29 -39.45 -0.29 0.59 16 28 F -0.14 -1.89 17.26 2.25 0.04 -1.85 16 29 C -0.10 -1.29 10.07 -39.21 -0.40 -1.68 16 30 C -0.06 -0.79 6.35 -105.14 -0.67 -1.45 16 31 C 0.13 2.68 7.00 -3.07 -0.02 2.65 16 32 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 33 H 0.06 1.41 6.64 -51.93 -0.34 1.07 16 34 H 0.04 0.85 5.57 -51.93 -0.29 0.56 16 35 H 0.38 3.90 9.12 45.56 0.42 4.31 16 36 H 0.40 3.95 8.54 -40.82 -0.35 3.60 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.17 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 41 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.04 0.81 8.03 -51.93 -0.42 0.39 16 44 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 370.99 15.07 5.59 5.59 Total: -1.00 -37.81 370.99 -8.02 -45.82 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -4.74 Total: 6.57 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -4.29 Total: 0.64 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: -0.10 Total: -56.88 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.39 Total: -18.39 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.13 Total: 18.49 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.81 -8.02 -45.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077736653.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.258 kcal (2) G-P(sol) polarization free energy of solvation -37.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds