Wall clock time and date at job start Wed Apr 1 2020 06:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00183 * 2 1 4 4 H 1.09003 * 110.91527 * 26.09631 * 3 2 1 5 5 C 1.54911 * 111.00477 * 262.19728 * 3 2 1 6 6 N 1.47425 * 104.83399 * 204.91298 * 5 3 2 7 7 C 1.36933 * 125.65340 * 204.16187 * 6 5 3 8 8 H 1.07998 * 120.00476 * 179.97438 * 7 6 5 9 9 C 1.38817 * 119.99645 * 359.96167 * 7 6 5 10 10 N 1.31621 * 120.00191 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99730 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.46726 * 90.00325 * 11 9 7 13 13 H 1.48498 * 109.47111 * 209.99754 * 11 9 7 14 14 H 1.48494 * 109.47208 * 330.00002 * 11 9 7 15 15 C 1.47028 * 108.70138 * 24.12794 * 6 5 3 16 16 C 1.54329 * 107.26978 * 358.94408 * 15 6 5 17 17 H 1.08995 * 110.72415 * 96.34372 * 16 15 6 18 18 N 1.46503 * 110.71758 * 219.44312 * 16 15 6 19 19 C 1.34775 * 119.99700 * 273.54267 * 18 16 15 20 20 O 1.21492 * 120.00409 * 0.02562 * 19 18 16 21 21 C 1.48345 * 119.99609 * 179.97438 * 19 18 16 22 22 C 1.41715 * 126.81038 * 179.97438 * 21 19 18 23 23 C 1.37154 * 103.79709 * 179.97438 * 22 21 19 24 24 C 1.47012 * 126.86045 * 180.02562 * 23 22 21 25 25 C 1.36336 * 125.96864 * 180.02562 * 24 23 22 26 26 C 1.40699 * 106.72380 * 179.97438 * 25 24 23 27 27 C 1.34892 * 107.07850 * 359.97438 * 26 25 24 28 28 O 1.34222 * 108.73278 * 0.02562 * 27 26 25 29 29 O 1.34577 * 106.28010 * 0.26256 * 23 22 21 30 30 N 1.20863 * 111.69429 * 359.52965 * 29 23 22 31 31 H 1.08998 * 109.47342 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47341 * 300.00266 * 1 2 3 33 33 H 1.09006 * 109.46743 * 59.99674 * 1 2 3 34 34 H 1.09002 * 110.36928 * 86.07696 * 5 3 2 35 35 H 1.08999 * 110.36670 * 323.75619 * 5 3 2 36 36 H 0.96995 * 119.99697 * 180.02562 * 10 9 7 37 37 H 1.08998 * 109.88246 * 239.52411 * 15 6 5 38 38 H 1.09007 * 110.00758 * 118.42436 * 15 6 5 39 39 H 0.96996 * 119.99861 * 93.53934 * 18 16 15 40 40 H 1.08001 * 128.10096 * 359.93826 * 22 21 19 41 41 H 1.08006 * 126.64163 * 359.97438 * 25 24 23 42 42 H 1.07994 * 126.46152 * 180.02562 * 26 25 24 43 43 H 1.07998 * 125.62940 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3332 2.0329 0.4479 5 6 2.4155 1.7328 -1.4328 6 7 3.4909 2.7229 -1.2414 7 6 3.8422 3.7020 -2.1319 8 1 4.6479 4.3817 -1.8972 9 6 3.1627 3.8207 -3.3366 10 7 2.1805 2.9925 -3.6226 11 14 3.6414 5.1568 -4.5512 12 1 4.6818 4.6366 -5.4745 13 1 2.4469 5.5669 -5.3322 14 1 4.1762 6.3287 -3.8125 15 6 4.1233 2.4855 0.0645 16 6 3.3824 1.3032 0.7242 17 1 3.9135 0.3681 0.5470 18 7 3.2108 1.5356 2.1605 19 6 4.1856 1.1821 3.0214 20 8 5.2068 0.6711 2.6065 21 6 4.0120 1.4179 4.4757 22 6 4.9366 1.1047 5.5030 23 6 4.3053 1.5177 6.6484 24 6 4.8227 1.4291 8.0216 25 6 4.1784 1.8455 9.1486 26 6 5.0350 1.5696 10.2301 27 6 6.1481 1.0040 9.7195 28 8 6.0168 0.9209 8.3863 29 8 3.1153 2.0155 6.2647 30 7 2.9726 1.9582 5.0659 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.5686 2.1874 -1.9469 35 1 2.7852 0.8749 -1.9943 36 1 1.7060 3.0753 -4.4645 37 1 4.0315 3.3748 0.6880 38 1 5.1754 2.2345 -0.0707 39 1 2.3957 1.9439 2.4917 40 1 5.9102 0.6472 5.4066 41 1 3.1998 2.2995 9.2011 42 1 4.8380 1.7715 11.2725 43 1 7.0036 0.6728 10.2894 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081999795.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:06 Heat of formation + Delta-G solvation = 46.842529 kcal Electronic energy + Delta-G solvation = -29503.523712 eV Core-core repulsion = 25135.041987 eV Total energy + Delta-G solvation = -4368.481725 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.38733 -43.04323 -39.80803 -38.14381 -35.96820 -34.42138 -34.22268 -33.79942 -33.01546 -31.75179 -29.25036 -28.88392 -27.37742 -26.10725 -25.23271 -23.96660 -23.78851 -22.41604 -21.83950 -20.76474 -20.43423 -19.84234 -19.08677 -18.20897 -17.34534 -17.13296 -16.76414 -16.50767 -16.46522 -15.60383 -15.24965 -15.04496 -14.78676 -14.45700 -14.31017 -14.23443 -13.88829 -13.45185 -13.28643 -13.23556 -12.97003 -12.84705 -12.26959 -12.08843 -11.93430 -11.54759 -11.30151 -11.04901 -10.97552 -10.86572 -10.82562 -10.75304 -10.39178 -10.33676 -10.16504 -9.94497 -9.84349 -9.16892 -8.79864 -8.71954 -8.64959 -6.92815 -5.71583 -3.14748 0.22411 1.06177 1.58449 1.69667 2.27319 2.85110 3.09809 3.22442 3.38317 3.43189 3.45007 3.65952 3.97841 4.08045 4.40250 4.44805 4.47468 4.55398 4.82834 4.92005 5.14037 5.27250 5.31911 5.39146 5.43706 5.47117 5.51292 5.57926 5.64115 5.64736 5.79167 5.87755 5.92940 6.02076 6.14593 6.34535 6.44919 6.63094 6.78443 7.21613 7.37812 7.53972 7.65227 7.70162 7.76280 8.09263 8.24911 9.13835 9.73961 10.36091 11.32367 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.018275 B = 0.002120 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.820994 B =13205.190774 C =14037.860792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.380 6.380 3 C 0.055 3.945 4 H 0.069 0.931 5 C 0.142 3.858 6 N -0.600 5.600 7 C -0.223 4.223 8 H 0.081 0.919 9 C -0.011 4.011 10 N -0.923 5.923 11 Si 0.918 3.082 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.130 3.870 16 C 0.134 3.866 17 H 0.106 0.894 18 N -0.697 5.697 19 C 0.597 3.403 20 O -0.516 6.516 21 C -0.012 4.012 22 C -0.149 4.149 23 C 0.032 3.968 24 C 0.043 3.957 25 C -0.157 4.157 26 C -0.215 4.215 27 C -0.014 4.014 28 O -0.158 6.158 29 O 0.143 5.857 30 N -0.321 5.321 31 H 0.079 0.921 32 H 0.034 0.966 33 H 0.047 0.953 34 H 0.114 0.886 35 H 0.028 0.972 36 H 0.254 0.746 37 H 0.030 0.970 38 H 0.037 0.963 39 H 0.404 0.596 40 H 0.189 0.811 41 H 0.161 0.839 42 H 0.158 0.842 43 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.882 -4.586 27.207 27.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.298 6.298 3 C -0.005 4.005 4 H 0.087 0.913 5 C 0.017 3.983 6 N -0.328 5.328 7 C -0.351 4.351 8 H 0.098 0.902 9 C -0.206 4.206 10 N -0.571 5.571 11 Si 0.748 3.252 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.206 1.206 15 C 0.003 3.997 16 C 0.030 3.970 17 H 0.124 0.876 18 N -0.347 5.347 19 C 0.379 3.621 20 O -0.389 6.389 21 C -0.170 4.170 22 C -0.171 4.171 23 C -0.031 4.031 24 C -0.008 4.008 25 C -0.177 4.177 26 C -0.233 4.233 27 C -0.083 4.083 28 O -0.053 6.053 29 O 0.064 5.936 30 N -0.020 5.020 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.132 0.868 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.054 0.946 39 H 0.239 0.761 40 H 0.206 0.794 41 H 0.178 0.822 42 H 0.175 0.825 43 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 0.729 -4.699 25.895 26.328 hybrid contribution 0.310 0.783 -0.106 0.849 sum 1.039 -3.915 25.789 26.105 Atomic orbital electron populations 1.22721 0.81495 1.02020 0.99990 1.87846 1.19309 1.27591 1.95081 1.24052 0.92388 0.83923 1.00090 0.91317 1.22309 0.94703 0.92075 0.89246 1.44301 1.37305 1.35477 1.15707 1.19092 1.13947 1.06069 0.95949 0.90153 1.24817 0.98505 0.99391 0.97893 1.69745 1.24585 1.38698 1.24101 0.86017 0.77326 0.80884 0.80936 1.21492 1.21613 1.20637 1.21605 0.95934 0.93885 0.88254 1.22322 0.97393 1.00520 0.76784 0.87618 1.45896 1.19704 1.61652 1.07453 1.16795 0.84023 0.79021 0.82235 1.90828 1.27674 1.43137 1.77307 1.23460 0.92390 1.03482 0.97621 1.22752 1.02472 1.03474 0.88389 1.20443 0.87869 1.03068 0.91703 1.18031 0.86749 1.06303 0.89684 1.22013 1.01823 1.03255 0.90612 1.21836 0.94877 1.05772 1.00861 1.24375 1.01380 1.02973 0.79532 1.84074 1.32707 1.63775 1.24756 1.84927 1.31087 1.59881 1.17667 1.74183 1.21700 1.16591 0.89518 0.90230 0.94761 0.93441 0.86836 0.95363 0.93559 0.95178 0.94550 0.76120 0.79413 0.82152 0.82475 0.77024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.85 101.05 1.10 1.59 16 2 O -0.38 -7.02 10.51 -35.23 -0.37 -7.39 16 3 C 0.05 1.07 3.15 -24.58 -0.08 0.99 16 4 H 0.07 1.25 7.69 -51.93 -0.40 0.85 16 5 C 0.14 3.47 5.62 -2.53 -0.01 3.46 16 6 N -0.60 -15.50 3.39 -170.06 -0.58 -16.08 16 7 C -0.22 -6.20 10.27 -15.06 -0.15 -6.36 16 8 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 9 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 10 N -0.92 -26.56 10.09 55.49 0.56 -26.00 16 11 Si 0.92 22.00 29.55 -169.99 -5.02 16.98 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 C 0.13 2.87 6.99 -3.06 -0.02 2.85 16 16 C 0.13 2.58 2.97 -66.09 -0.20 2.38 16 17 H 0.11 2.18 7.69 -51.93 -0.40 1.78 16 18 N -0.70 -11.38 5.13 -52.81 -0.27 -11.65 16 19 C 0.60 9.88 7.85 -12.10 -0.09 9.78 16 20 O -0.52 -9.96 16.67 5.37 0.09 -9.87 16 21 C -0.01 -0.16 7.17 -82.66 -0.59 -0.75 16 22 C -0.15 -1.75 10.96 -38.65 -0.42 -2.17 16 23 C 0.03 0.34 7.30 -36.42 -0.27 0.07 16 24 C 0.04 0.39 7.17 -36.71 -0.26 0.12 16 25 C -0.16 -1.11 10.86 -39.34 -0.43 -1.54 16 26 C -0.21 -1.15 10.88 -39.84 -0.43 -1.58 16 27 C -0.01 -0.07 12.08 29.55 0.36 0.28 16 28 O -0.16 -1.32 10.67 4.57 0.05 -1.27 16 29 O 0.14 1.58 11.21 15.74 0.18 1.76 16 30 N -0.32 -4.13 11.81 33.36 0.39 -3.74 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.11 3.04 5.87 -51.93 -0.30 2.74 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.03 0.65 8.03 -51.93 -0.42 0.24 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.40 5.85 8.27 -40.82 -0.34 5.51 16 40 H 0.19 1.96 8.06 -52.49 -0.42 1.54 16 41 H 0.16 0.87 8.06 -52.48 -0.42 0.44 16 42 H 0.16 0.46 8.06 -52.49 -0.42 0.03 16 43 H 0.21 0.24 8.06 -52.49 -0.42 -0.18 16 LS Contribution 376.58 15.07 5.68 5.68 Total: -1.00 -32.96 376.58 -6.12 -39.07 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.21 Total: 3.78 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: -1.61 Total: 8.74 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: 0.11 Total: -57.47 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.06 Total: -16.77 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.96 -6.12 -39.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081999795.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.913 kcal (2) G-P(sol) polarization free energy of solvation -32.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds