Wall clock time and date at job start Wed Apr 1 2020 05:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34140 * 118.70890 * 2 1 4 4 O 1.21226 * 119.35873 * 359.45462 * 3 2 1 5 5 C 1.50590 * 121.28380 * 179.47704 * 3 2 1 6 6 C 1.53245 * 109.16234 * 29.07065 * 5 3 2 7 7 C 1.53244 * 108.56718 * 304.39248 * 6 5 3 8 8 H 1.09002 * 109.52367 * 175.58183 * 7 6 5 9 9 N 1.46501 * 109.51957 * 295.70487 * 7 6 5 10 10 C 1.34774 * 120.00161 * 205.00594 * 9 7 6 11 11 O 1.21595 * 119.99536 * 359.97438 * 10 9 7 12 12 N 1.34774 * 120.00496 * 180.02562 * 10 9 7 13 13 C 1.40027 * 120.00537 * 175.49478 * 12 10 9 14 14 C 1.38909 * 120.00096 * 214.85059 * 13 12 10 15 15 C 1.38011 * 119.99841 * 179.76237 * 14 13 12 16 16 C 1.38905 * 119.99765 * 0.48537 * 15 14 13 17 17 O 1.35784 * 119.99588 * 179.76277 * 16 15 14 18 18 C 1.34812 * 117.00171 * 185.36891 * 17 16 15 19 19 H 1.08008 * 119.99919 * 354.96757 * 18 17 16 20 20 C 1.38626 * 120.00460 * 174.96854 * 18 17 16 21 21 N 1.31577 * 119.99853 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00191 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47020 * 89.99968 * 22 20 18 24 24 H 1.48496 * 109.47043 * 209.99808 * 22 20 18 25 25 H 1.48495 * 109.47143 * 329.99905 * 22 20 18 26 26 C 1.38899 * 120.00562 * 359.79232 * 16 15 14 27 27 C 1.38012 * 119.99946 * 359.94956 * 26 16 15 28 28 C 1.34147 * 118.70571 * 179.73728 * 2 1 3 29 29 O 1.21224 * 119.35917 * 0.54199 * 28 2 1 30 30 H 1.08994 * 109.46930 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.47476 * 239.99746 * 1 2 3 32 32 H 1.09005 * 109.47185 * 119.99840 * 1 2 3 33 33 H 1.08993 * 109.52380 * 148.97787 * 5 3 2 34 34 H 1.09002 * 109.52473 * 269.16915 * 5 3 2 35 35 H 1.09007 * 109.61678 * 64.10931 * 6 5 3 36 36 H 1.08995 * 109.62396 * 184.66060 * 6 5 3 37 37 H 0.96998 * 120.00419 * 24.99971 * 9 7 6 38 38 H 0.96998 * 119.99540 * 355.48340 * 12 10 9 39 39 H 1.08001 * 119.99952 * 0.02562 * 14 13 12 40 40 H 1.08002 * 120.00009 * 180.27602 * 15 14 13 41 41 H 0.96996 * 120.00482 * 180.02562 * 21 20 18 42 42 H 1.08000 * 120.00397 * 179.97438 * 26 16 15 43 43 H 1.08002 * 120.00069 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1093 1.1765 0.0000 4 8 1.4681 2.2053 -0.0101 5 6 3.6136 1.2442 0.0117 6 6 4.1785 -0.0002 -0.6816 7 6 3.6135 -1.2443 0.0122 8 1 3.9431 -2.1381 -0.5175 9 7 4.0906 -1.2918 1.3965 10 6 4.1681 -2.4722 2.0425 11 8 3.8415 -3.4975 1.4763 12 7 4.6065 -2.5159 3.3162 13 6 4.5980 -3.7274 4.0184 14 6 4.3320 -3.7381 5.3817 15 6 4.3189 -4.9326 6.0728 16 6 4.5816 -6.1230 5.4071 17 8 4.5735 -7.2978 6.0880 18 6 4.9447 -8.4015 5.4088 19 1 5.1525 -8.3401 4.3507 20 6 5.0598 -9.6154 6.0684 21 7 4.8071 -9.6902 7.3575 22 14 5.5735 -11.1449 5.1271 23 1 7.0528 -11.2710 5.1571 24 1 4.9617 -12.3425 5.7569 25 1 5.1144 -11.0371 3.7190 26 6 4.8533 -6.1118 4.0450 27 6 4.8612 -4.9179 3.3527 28 6 2.1092 -1.1766 0.0054 29 8 1.4681 -2.2054 0.0001 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3634 -0.5139 0.8899 32 1 -0.3634 -0.5138 -0.8900 33 1 3.9422 2.1377 -0.5190 34 1 3.9686 1.2799 1.0417 35 1 3.8830 -0.0004 -1.7309 36 1 5.2658 -0.0002 -0.6048 37 1 4.3509 -0.4739 1.8483 38 1 4.9280 -1.7082 3.7464 39 1 4.1313 -2.8121 5.9000 40 1 4.1077 -4.9414 7.1320 41 1 4.8879 -10.5394 7.8192 42 1 5.0580 -7.0373 3.5274 43 1 5.0721 -4.9091 2.2935 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118105344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:57 Heat of formation + Delta-G solvation = -107.389825 kcal Electronic energy + Delta-G solvation = -29746.801273 eV Core-core repulsion = 25371.631532 eV Total energy + Delta-G solvation = -4375.169741 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.92410 -41.56623 -40.49552 -39.94537 -38.41554 -37.21482 -36.17229 -35.44511 -34.22533 -33.56349 -31.82732 -29.90973 -28.80720 -28.53175 -27.21492 -24.53868 -24.20329 -23.81326 -23.25975 -22.00771 -20.17293 -19.67057 -19.49353 -18.88825 -18.63266 -18.20586 -17.99956 -17.64507 -16.67916 -16.52391 -16.31287 -16.18635 -15.73717 -15.59891 -15.45481 -15.42269 -15.24995 -14.71516 -14.65383 -14.42872 -14.15511 -14.08668 -13.76363 -13.57674 -13.44836 -13.26840 -13.19292 -12.70069 -12.47554 -12.42926 -12.30081 -12.13175 -11.80516 -11.48826 -11.32252 -11.28084 -10.94895 -10.88977 -10.54874 -10.32572 -9.81230 -8.57964 -8.46069 -6.12634 0.31748 0.54615 0.60964 1.29496 1.35232 1.42938 1.47172 1.52323 1.87321 2.05400 2.18758 2.82533 2.86497 3.15924 3.18127 3.44940 3.52275 3.53903 3.73748 4.11265 4.15045 4.19021 4.24056 4.30479 4.34000 4.46037 4.50326 4.68080 4.68450 4.74045 4.81287 4.87778 5.05631 5.07252 5.13539 5.16842 5.37224 5.42373 5.61969 5.72833 5.82333 5.94407 6.03907 6.20683 6.34832 6.64749 6.96262 6.98744 7.47689 7.78683 8.76723 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.022180 B = 0.002065 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.072388 B =13553.927780 C =13814.981983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.569 5.569 3 C 0.519 3.481 4 O -0.535 6.535 5 C -0.136 4.136 6 C -0.119 4.119 7 C 0.153 3.847 8 H 0.122 0.878 9 N -0.711 5.711 10 C 0.694 3.306 11 O -0.604 6.604 12 N -0.656 5.656 13 C 0.080 3.920 14 C -0.078 4.078 15 C -0.181 4.181 16 C 0.105 3.895 17 O -0.228 6.228 18 C -0.412 4.412 19 H 0.097 0.903 20 C -0.021 4.021 21 N -0.918 5.918 22 Si 1.016 2.984 23 H -0.260 1.260 24 H -0.270 1.270 25 H -0.258 1.258 26 C -0.230 4.230 27 C -0.074 4.074 28 C 0.503 3.497 29 O -0.522 6.522 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.147 0.853 34 H 0.136 0.864 35 H 0.110 0.890 36 H 0.142 0.858 37 H 0.422 0.578 38 H 0.425 0.575 39 H 0.167 0.833 40 H 0.128 0.872 41 H 0.273 0.727 42 H 0.115 0.885 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.273 28.143 -16.600 32.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.312 5.312 3 C 0.312 3.688 4 O -0.410 6.410 5 C -0.175 4.175 6 C -0.156 4.156 7 C 0.044 3.956 8 H 0.140 0.860 9 N -0.372 5.372 10 C 0.395 3.605 11 O -0.481 6.481 12 N -0.306 5.306 13 C -0.014 4.014 14 C -0.098 4.098 15 C -0.201 4.201 16 C 0.054 3.946 17 O -0.135 6.135 18 C -0.489 4.489 19 H 0.114 0.886 20 C -0.219 4.219 21 N -0.557 5.557 22 Si 0.835 3.165 23 H -0.185 1.185 24 H -0.194 1.194 25 H -0.182 1.182 26 C -0.250 4.250 27 C -0.094 4.094 28 C 0.290 3.710 29 O -0.393 6.393 30 H 0.122 0.878 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.165 0.835 34 H 0.154 0.846 35 H 0.128 0.872 36 H 0.160 0.840 37 H 0.262 0.738 38 H 0.264 0.736 39 H 0.185 0.815 40 H 0.146 0.854 41 H 0.082 0.918 42 H 0.133 0.867 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.233 27.058 -16.760 31.852 hybrid contribution -0.276 -0.687 0.315 0.804 sum 0.957 26.371 -16.445 31.093 Atomic orbital electron populations 1.21953 0.78247 1.04980 1.03421 1.46732 1.10197 1.08130 1.66174 1.21943 0.93296 0.81211 0.72331 1.90741 1.69809 1.33854 1.46640 1.22134 0.85757 1.02692 1.06874 1.22197 1.05094 0.87795 1.00539 1.21187 0.85588 1.04864 0.83968 0.86042 1.44662 1.70714 1.08119 1.13679 1.16187 0.78166 0.84432 0.81729 1.91016 1.55621 1.34202 1.67279 1.41974 1.66604 1.10321 1.11707 1.17104 1.07730 0.85234 0.91359 1.20741 0.99026 0.97822 0.92186 1.20313 1.09497 0.89735 1.00515 1.19952 0.95385 0.87627 0.91629 1.83934 1.76981 1.13302 1.39290 1.21758 1.47495 0.85208 0.94407 0.88600 1.26523 0.96650 1.01725 0.96993 1.70177 1.47839 1.27612 1.10049 0.84624 0.78947 0.75059 0.77829 1.18520 1.19416 1.18230 1.21103 1.10750 0.99076 0.94028 1.20957 0.97579 0.91071 0.99822 1.22243 0.93029 0.81965 0.73729 1.90813 1.69539 1.34851 1.44059 0.87828 0.91602 0.90570 0.83527 0.84627 0.87184 0.83989 0.73779 0.73577 0.81514 0.85418 0.91818 0.86742 0.85389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.96 9.81 127.77 1.25 2.21 16 2 N -0.57 -9.20 2.93 -781.16 -2.29 -11.49 16 3 C 0.52 6.11 7.48 87.72 0.66 6.76 16 4 O -0.54 -9.92 16.19 -2.86 -0.05 -9.96 16 5 C -0.14 -0.05 5.88 29.90 0.18 0.13 16 6 C -0.12 -0.02 5.73 30.76 0.18 0.16 16 7 C 0.15 1.82 2.76 44.29 0.12 1.95 16 8 H 0.12 1.95 7.58 -2.39 -0.02 1.94 16 9 N -0.71 -8.26 4.99 -461.19 -2.30 -10.56 16 10 C 0.69 16.45 8.37 179.06 1.50 17.94 16 11 O -0.60 -21.53 13.44 -4.02 -0.05 -21.58 16 12 N -0.66 -13.93 5.35 -317.04 -1.69 -15.63 16 13 C 0.08 2.57 6.30 38.15 0.24 2.81 16 14 C -0.08 -2.42 9.96 22.38 0.22 -2.20 16 15 C -0.18 -7.45 9.99 22.38 0.22 -7.22 16 16 C 0.10 5.32 6.65 22.59 0.15 5.47 16 17 O -0.23 -13.97 9.76 -22.94 -0.22 -14.19 16 18 C -0.41 -24.75 9.48 67.91 0.64 -24.11 16 19 H 0.10 5.40 5.20 -2.91 -0.02 5.39 16 20 C -0.02 -1.24 5.49 84.82 0.47 -0.78 16 21 N -0.92 -57.01 13.67 21.61 0.30 -56.72 16 22 Si 1.02 44.24 29.55 68.60 2.03 46.26 16 23 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 25 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 26 C -0.23 -10.85 9.16 22.37 0.20 -10.65 16 27 C -0.07 -2.96 8.69 22.38 0.19 -2.76 16 28 C 0.50 9.97 7.02 87.72 0.62 10.59 16 29 O -0.52 -16.40 16.93 -2.86 -0.05 -16.45 16 30 H 0.10 1.63 6.73 -2.39 -0.02 1.62 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.15 -0.50 8.14 -2.39 -0.02 -0.52 16 34 H 0.14 -0.60 6.81 -2.39 -0.02 -0.62 16 35 H 0.11 -0.12 8.14 -2.38 -0.02 -0.13 16 36 H 0.14 -0.77 8.14 -2.39 -0.02 -0.79 16 37 H 0.42 0.92 7.17 -92.71 -0.66 0.26 16 38 H 0.43 4.61 8.84 -92.71 -0.82 3.79 16 39 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 40 H 0.13 5.02 8.06 -2.91 -0.02 5.00 16 41 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 42 H 0.11 5.62 5.63 -2.91 -0.02 5.61 16 43 H 0.13 5.10 6.22 -2.91 -0.02 5.09 16 Total: -1.00 -95.34 366.18 2.14 -93.20 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -0.38 Total: 16.80 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: 6.84 Total: 0.31 kcal Atomic # 7 Polarization: -88.40 SS G_CDS: -5.99 Total: -94.39 kcal Atomic # 8 Polarization: -61.81 SS G_CDS: -0.37 Total: -62.18 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -95.34 2.14 -93.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118105344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.189 kcal (2) G-P(sol) polarization free energy of solvation -95.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds