Wall clock time and date at job start Wed Apr 1 2020 05:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34140 * 118.70283 * 2 1 4 4 O 1.21229 * 119.36295 * 359.46150 * 3 2 1 5 5 C 1.50592 * 121.27918 * 179.48113 * 3 2 1 6 6 C 1.53242 * 109.16349 * 29.07243 * 5 3 2 7 7 C 1.53242 * 108.56659 * 304.38735 * 6 5 3 8 8 H 1.09004 * 109.52522 * 295.64936 * 7 6 5 9 9 N 1.46499 * 109.52530 * 175.51958 * 7 6 5 10 10 C 1.34768 * 120.00138 * 155.00212 * 9 7 6 11 11 O 1.21590 * 120.00347 * 359.97438 * 10 9 7 12 12 N 1.34783 * 119.99650 * 180.02562 * 10 9 7 13 13 C 1.40029 * 119.99823 * 174.73679 * 12 10 9 14 14 C 1.38909 * 119.99928 * 326.16522 * 13 12 10 15 15 C 1.38014 * 119.99392 * 179.79092 * 14 13 12 16 16 C 1.38897 * 120.00097 * 0.45652 * 15 14 13 17 17 O 1.35789 * 119.99788 * 179.76777 * 16 15 14 18 18 C 1.34816 * 117.00224 * 185.93622 * 17 16 15 19 19 H 1.07998 * 119.99551 * 5.40955 * 18 17 16 20 20 C 1.38624 * 120.00105 * 185.40278 * 18 17 16 21 21 N 1.31573 * 120.00132 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99731 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47362 * 90.00710 * 22 20 18 24 24 H 1.48504 * 109.46963 * 210.00124 * 22 20 18 25 25 H 1.48501 * 109.47386 * 330.00234 * 22 20 18 26 26 C 1.38905 * 120.00665 * 359.79535 * 16 15 14 27 27 C 1.38008 * 119.99583 * 359.97438 * 26 16 15 28 28 C 1.34137 * 118.70864 * 179.74079 * 2 1 3 29 29 O 1.21227 * 119.36033 * 0.53734 * 28 2 1 30 30 H 1.08997 * 109.47678 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47561 * 119.99956 * 1 2 3 32 32 H 1.09008 * 109.46931 * 239.99600 * 1 2 3 33 33 H 1.09001 * 109.52195 * 148.98110 * 5 3 2 34 34 H 1.09005 * 109.51751 * 269.16811 * 5 3 2 35 35 H 1.08995 * 109.61504 * 64.10842 * 6 5 3 36 36 H 1.08994 * 109.62245 * 184.66442 * 6 5 3 37 37 H 0.97002 * 119.99404 * 334.99865 * 9 7 6 38 38 H 0.96997 * 120.00206 * 354.73594 * 12 10 9 39 39 H 1.07998 * 120.00610 * 0.02562 * 14 13 12 40 40 H 1.08003 * 119.99937 * 180.22961 * 15 14 13 41 41 H 0.96996 * 119.99967 * 179.97438 * 21 20 18 42 42 H 1.08001 * 120.00302 * 179.97438 * 26 16 15 43 43 H 1.08000 * 119.99887 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1092 1.1766 0.0000 4 8 1.4680 2.2054 -0.0099 5 6 3.6136 1.2443 0.0117 6 6 4.1785 0.0000 -0.6818 7 6 3.6137 -1.2441 0.0120 8 1 3.9695 -1.2801 1.0417 9 7 4.0553 -2.4453 -0.7009 10 6 4.1328 -3.6239 -0.0518 11 8 3.8365 -3.6902 1.1256 12 7 4.5396 -4.7289 -0.7077 13 6 4.7260 -5.9284 -0.0098 14 6 5.1854 -5.9052 1.3009 15 6 5.3649 -7.0874 1.9901 16 6 5.0953 -8.3007 1.3700 17 8 5.2765 -9.4640 2.0466 18 6 5.1157 -10.6078 1.3515 19 1 4.9408 -10.5723 0.2863 20 6 5.1750 -11.8296 2.0038 21 7 5.3877 -11.8728 3.3015 22 14 4.9528 -13.4144 1.0404 23 1 6.2742 -13.8894 0.5571 24 1 4.3469 -14.4470 1.9190 25 1 4.0608 -13.1671 -0.1208 26 6 4.6409 -8.3242 0.0576 27 6 4.4568 -7.1419 -0.6301 28 6 2.1093 -1.1765 0.0053 29 8 1.4682 -2.2053 0.0001 30 1 -0.3634 1.0276 0.0005 31 1 -0.3634 -0.5138 -0.8899 32 1 -0.3633 -0.5139 0.8900 33 1 3.9421 2.1379 -0.5191 34 1 3.9685 1.2800 1.0417 35 1 3.8830 -0.0001 -1.7309 36 1 5.2657 0.0001 -0.6050 37 1 4.2920 -2.3923 -1.6401 38 1 4.7032 -4.6931 -1.6631 39 1 5.3984 -4.9620 1.7820 40 1 5.7186 -7.0693 3.0105 41 1 5.4288 -12.7277 3.7580 42 1 4.4317 -9.2676 -0.4246 43 1 4.1039 -7.1601 -1.6506 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118105345.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:03 Heat of formation + Delta-G solvation = -77.870466 kcal Electronic energy + Delta-G solvation = -29455.769999 eV Core-core repulsion = 25081.880313 eV Total energy + Delta-G solvation = -4373.889686 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.13905 -40.37834 -39.22837 -38.66581 -36.91824 -36.11700 -35.41551 -34.04844 -33.15616 -32.12478 -30.18921 -28.73372 -28.05560 -27.21197 -25.29174 -23.79748 -23.57194 -22.30487 -21.76184 -20.60370 -19.31951 -18.48369 -17.97117 -17.78039 -17.74019 -17.30017 -17.01507 -16.36020 -15.70809 -15.34428 -15.13403 -14.84212 -14.67856 -14.55516 -14.46893 -14.12094 -13.62463 -13.56529 -13.48227 -13.19347 -12.97533 -12.80967 -12.77490 -12.50378 -12.48687 -11.82721 -11.81445 -11.56966 -11.52533 -11.06176 -10.86293 -10.67473 -10.65085 -10.44645 -10.10224 -10.07302 -9.66576 -9.43981 -9.23565 -8.68596 -8.17342 -6.88353 -6.41654 -3.99623 1.12250 2.00097 2.14315 2.21639 2.30156 2.66316 3.12570 3.15193 3.20083 3.22855 3.47787 3.83957 3.98717 4.01881 4.01957 4.29036 4.44194 4.61214 4.76957 4.89520 5.00107 5.01269 5.04163 5.13314 5.18246 5.23356 5.34797 5.40491 5.57900 5.78879 5.93589 6.14076 6.21355 6.26181 6.55212 6.61576 6.83509 6.92303 7.01478 7.12383 7.21521 7.26265 7.37903 7.45517 7.81886 7.95017 8.02833 8.59771 9.03770 9.74885 10.76463 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.029662 B = 0.001857 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.747140 B =15072.809408 C =15260.231348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.569 5.569 3 C 0.520 3.480 4 O -0.505 6.505 5 C -0.137 4.137 6 C -0.130 4.130 7 C 0.152 3.848 8 H 0.133 0.867 9 N -0.732 5.732 10 C 0.707 3.293 11 O -0.562 6.562 12 N -0.671 5.671 13 C 0.057 3.943 14 C -0.067 4.067 15 C -0.177 4.177 16 C 0.145 3.855 17 O -0.178 6.178 18 C -0.390 4.390 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.862 5.862 22 Si 0.941 3.059 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.218 4.218 27 C -0.092 4.092 28 C 0.497 3.503 29 O -0.465 6.465 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.401 0.599 38 H 0.398 0.602 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.270 0.730 42 H 0.131 0.869 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.307 25.978 -12.037 28.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.313 5.313 3 C 0.311 3.689 4 O -0.378 6.378 5 C -0.177 4.177 6 C -0.169 4.169 7 C 0.042 3.958 8 H 0.151 0.849 9 N -0.388 5.388 10 C 0.407 3.593 11 O -0.437 6.437 12 N -0.318 5.318 13 C -0.036 4.036 14 C -0.087 4.087 15 C -0.196 4.196 16 C 0.091 3.909 17 O -0.081 6.081 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.497 5.497 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.237 4.237 27 C -0.112 4.112 28 C 0.283 3.717 29 O -0.333 6.333 30 H 0.116 0.884 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.103 0.897 36 H 0.125 0.875 37 H 0.235 0.765 38 H 0.232 0.768 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.079 0.921 42 H 0.149 0.851 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.163 25.631 -10.522 27.792 hybrid contribution -0.244 -0.811 -1.487 1.711 sum -2.408 24.821 -12.009 27.679 Atomic orbital electron populations 1.21954 0.77538 1.04824 1.03792 1.46597 1.10187 1.07659 1.66871 1.21020 0.91475 0.82564 0.73883 1.90743 1.68643 1.33066 1.45392 1.21899 0.89684 1.00801 1.05346 1.22033 1.03420 0.90859 1.00546 1.20749 0.88601 0.85505 1.00951 0.84914 1.44711 1.73256 1.06727 1.14153 1.15807 0.77982 0.80100 0.85374 1.90966 1.54176 1.84170 1.14420 1.42234 1.70496 1.07933 1.11107 1.16998 1.09429 0.83215 0.93978 1.20593 0.97499 0.97544 0.93072 1.20115 1.09103 0.89641 1.00789 1.19414 0.92890 0.87758 0.90798 1.84007 1.76390 1.10834 1.36868 1.21293 1.51345 0.81371 0.92657 0.89139 1.25283 0.96705 0.98655 0.95979 1.70047 1.45274 1.26550 1.07872 0.85719 0.78751 0.80141 0.78834 1.19928 1.20311 1.19246 1.20964 1.08987 0.98033 0.95761 1.20436 1.00632 0.90943 0.99214 1.21689 0.91946 0.82664 0.75391 1.90814 1.67933 1.32783 1.41751 0.88397 0.90698 0.90530 0.86056 0.86463 0.89680 0.87527 0.76457 0.76818 0.85745 0.86140 0.92057 0.85112 0.87215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.50 9.81 59.85 0.59 1.09 16 2 N -0.57 -4.93 2.93 -123.17 -0.36 -5.29 16 3 C 0.52 3.82 7.48 -11.32 -0.08 3.74 16 4 O -0.51 -5.23 16.19 5.60 0.09 -5.14 16 5 C -0.14 -0.41 6.07 -27.81 -0.17 -0.58 16 6 C -0.13 -0.34 5.56 -26.48 -0.15 -0.48 16 7 C 0.15 1.11 2.69 -69.01 -0.19 0.93 16 8 H 0.13 1.06 7.58 -51.93 -0.39 0.67 16 9 N -0.73 -6.21 4.89 -59.74 -0.29 -6.50 16 10 C 0.71 9.80 7.73 -86.92 -0.67 9.13 16 11 O -0.56 -10.37 13.63 5.29 0.07 -10.29 16 12 N -0.67 -8.99 5.35 -14.18 -0.08 -9.07 16 13 C 0.06 1.01 6.27 -83.61 -0.52 0.48 16 14 C -0.07 -1.32 8.65 -39.41 -0.34 -1.66 16 15 C -0.18 -3.91 9.98 -39.42 -0.39 -4.30 16 16 C 0.15 3.56 6.65 -39.09 -0.26 3.30 16 17 O -0.18 -5.11 9.76 -0.03 0.00 -5.11 16 18 C -0.39 -10.92 9.44 30.88 0.29 -10.63 16 19 H 0.09 2.32 5.29 -52.49 -0.28 2.05 16 20 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 21 N -0.86 -25.49 13.67 55.48 0.76 -24.73 16 22 Si 0.94 20.57 29.55 -169.99 -5.02 15.55 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 C -0.22 -4.71 9.13 -39.42 -0.36 -5.07 16 27 C -0.09 -1.67 9.96 -39.42 -0.39 -2.06 16 28 C 0.50 5.11 7.30 -11.32 -0.08 5.03 16 29 O -0.46 -6.97 15.94 5.60 0.09 -6.89 16 30 H 0.10 0.76 6.73 -51.93 -0.35 0.41 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.67 8.14 -51.92 -0.42 0.24 16 33 H 0.12 0.18 8.14 -51.93 -0.42 -0.25 16 34 H 0.12 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 36 H 0.11 0.08 8.14 -51.93 -0.42 -0.34 16 37 H 0.40 1.96 8.63 -40.82 -0.35 1.61 16 38 H 0.40 3.71 8.83 -40.82 -0.36 3.35 16 39 H 0.12 2.36 6.44 -52.49 -0.34 2.02 16 40 H 0.12 2.58 8.06 -52.48 -0.42 2.16 16 41 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.13 2.81 5.71 -52.49 -0.30 2.51 16 43 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 367.92 15.07 5.54 5.54 Total: -1.00 -39.10 367.92 -6.91 -46.02 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -4.89 Total: 6.06 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -2.83 Total: -0.14 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.03 Total: -45.59 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: 0.25 Total: -27.43 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -39.10 -6.91 -46.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118105345.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.855 kcal (2) G-P(sol) polarization free energy of solvation -39.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds