Wall clock time and date at job start Wed Apr 1 2020 05:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 S 1.65602 * 120.00208 * 2 1 4 4 O 1.42101 * 104.27821 * 181.07051 * 3 2 1 5 5 O 1.42102 * 104.27811 * 308.93385 * 3 2 1 6 6 C 1.81408 * 104.44575 * 65.00214 * 3 2 1 7 7 C 1.50703 * 109.46995 * 179.97438 * 6 3 2 8 8 O 1.21282 * 120.00088 * 0.02562 * 7 6 3 9 9 N 1.34772 * 120.00204 * 180.02562 * 7 6 3 10 10 C 1.46850 * 120.40735 * 359.71986 * 9 7 6 11 11 C 1.53888 * 109.40555 * 232.42403 * 10 9 7 12 12 C 1.52782 * 108.38706 * 306.05836 * 11 10 9 13 13 H 1.09003 * 109.34533 * 303.13596 * 12 11 10 14 14 O 1.42610 * 110.73426 * 182.58927 * 12 11 10 15 15 C 1.43143 * 113.63013 * 176.62191 * 14 12 11 16 16 C 1.53192 * 109.74467 * 61.68990 * 15 14 12 17 17 N 1.47358 * 108.79795 * 308.78585 * 16 15 14 18 18 C 1.36930 * 121.30525 * 230.25742 * 17 16 15 19 19 H 1.08003 * 119.99651 * 152.51819 * 18 17 16 20 20 C 1.38812 * 120.00373 * 332.51398 * 18 17 16 21 21 N 1.31617 * 119.99848 * 344.73327 * 20 18 17 22 22 Si 1.86798 * 120.00244 * 164.72937 * 20 18 17 23 23 H 1.48501 * 109.47001 * 94.82722 * 22 20 18 24 24 H 1.48497 * 109.47260 * 214.83069 * 22 20 18 25 25 H 1.48504 * 109.47077 * 334.83227 * 22 20 18 26 26 C 1.46877 * 117.38488 * 50.24063 * 17 16 15 27 27 H 1.08998 * 110.20797 * 67.97123 * 26 17 16 28 28 C 1.47133 * 120.41288 * 180.02562 * 9 7 6 29 29 H 1.09001 * 109.47175 * 59.99552 * 1 2 3 30 30 H 1.08998 * 109.47343 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47028 * 299.99562 * 1 2 3 32 32 H 0.97000 * 120.00145 * 180.28262 * 2 1 3 33 33 H 1.08989 * 109.47314 * 299.99870 * 6 3 2 34 34 H 1.09000 * 109.47041 * 60.00047 * 6 3 2 35 35 H 1.08998 * 109.51026 * 352.19120 * 10 9 7 36 36 H 1.09003 * 109.50004 * 112.32451 * 10 9 7 37 37 H 1.09003 * 109.55208 * 186.53354 * 11 10 9 38 38 H 1.09000 * 110.15015 * 65.93486 * 11 10 9 39 39 H 1.09000 * 109.42451 * 181.77007 * 15 14 12 40 40 H 1.09002 * 109.42961 * 301.65735 * 15 14 12 41 41 H 1.09001 * 109.58560 * 68.57703 * 16 15 14 42 42 H 1.08998 * 109.58374 * 188.99520 * 16 15 14 43 43 H 0.97000 * 120.00260 * 179.97438 * 21 20 18 44 44 H 1.08994 * 109.72395 * 246.42408 * 28 9 7 45 45 H 1.08996 * 109.72371 * 7.05834 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6606 1.0491 -0.0257 5 8 1.7188 2.1704 -1.0712 6 6 1.8764 2.1972 1.5922 7 6 2.5793 3.5249 1.7121 8 8 3.2907 3.9179 0.8119 9 7 2.4172 4.2756 2.8195 10 6 1.5530 3.8114 3.9123 11 6 0.5351 4.9113 4.2617 12 6 1.3000 6.2023 4.5486 13 1 2.0185 6.0260 5.3491 14 8 0.4060 7.2432 4.9372 15 6 1.0655 8.4621 5.2954 16 6 1.8412 9.0041 4.0908 17 7 2.6886 7.9276 3.5482 18 6 4.0212 8.1259 3.3036 19 1 4.7070 7.2924 3.3410 20 6 4.4908 9.3982 3.0075 21 7 3.6463 10.3484 2.6663 22 14 6.3210 9.7618 3.0933 23 1 6.9200 9.6079 1.7432 24 1 6.5275 11.1527 3.5709 25 1 6.9705 8.8138 4.0339 26 6 2.0478 6.6333 3.2806 27 1 1.3441 6.7256 2.4533 28 6 3.0987 5.5735 2.9459 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.9500 -0.8400 -0.0041 33 1 0.7988 2.3496 1.6512 34 1 2.1958 1.5429 2.4033 35 1 1.0200 2.9138 3.5986 36 1 2.1624 3.5865 4.7876 37 1 -0.0304 4.6175 5.1460 38 1 -0.1482 5.0694 3.4272 39 1 0.3240 9.1967 5.6094 40 1 1.7577 8.2723 6.1158 41 1 1.1408 9.3384 3.3254 42 1 2.4677 9.8388 4.4052 43 1 3.9743 11.2376 2.4598 44 1 3.8385 5.5243 3.7447 45 1 3.5888 5.8247 2.0053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177170434.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:06 Heat of formation + Delta-G solvation = -107.117629 kcal Electronic energy + Delta-G solvation = -30295.058035 eV Core-core repulsion = 26055.344048 eV Total energy + Delta-G solvation = -4239.713987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.38050 -38.75288 -37.23624 -36.33067 -36.05172 -35.33067 -34.77747 -32.29081 -31.51151 -30.70331 -29.60932 -27.05404 -26.37089 -25.17739 -24.05297 -22.22044 -21.66160 -20.10721 -19.73207 -19.01733 -18.28253 -17.26578 -17.09113 -16.59958 -16.44153 -15.99979 -15.62381 -15.31936 -15.11161 -14.97484 -14.53766 -14.27079 -14.04144 -13.97434 -13.66666 -13.20702 -13.17662 -13.11063 -12.89846 -12.70715 -12.52279 -12.17938 -12.10011 -12.01697 -11.88504 -11.46041 -11.32341 -11.08062 -10.99503 -10.91283 -10.64790 -10.35466 -10.28290 -10.18346 -10.02884 -9.97378 -9.67488 -9.08891 -8.59476 -8.56720 -6.78075 -5.87551 -3.33624 -0.05984 2.36029 2.49452 2.84544 3.34958 3.42519 3.43185 3.61458 3.94673 4.00729 4.18085 4.39547 4.57932 4.60608 4.66754 4.77340 4.99480 5.03834 5.17252 5.27186 5.31260 5.32922 5.34607 5.38950 5.55741 5.64319 5.75151 5.81833 6.01149 6.04484 6.14479 6.25256 6.34257 6.49145 6.54035 6.54348 6.76901 7.06209 7.26900 7.45849 7.67150 7.81657 7.91600 8.28180 9.05682 9.68942 10.26141 11.20611 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.003376 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.581703 B = 8292.312945 C = 9695.743402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -1.127 6.127 3 S 2.647 3.353 4 O -0.941 6.941 5 O -0.935 6.935 6 C -0.674 4.674 7 C 0.541 3.459 8 O -0.531 6.531 9 N -0.597 5.597 10 C 0.107 3.893 11 C -0.126 4.126 12 C 0.075 3.925 13 H 0.054 0.946 14 O -0.389 6.389 15 C 0.039 3.961 16 C 0.143 3.857 17 N -0.587 5.587 18 C -0.263 4.263 19 H 0.072 0.928 20 C 0.008 3.992 21 N -0.900 5.900 22 Si 0.904 3.096 23 H -0.285 1.285 24 H -0.289 1.289 25 H -0.278 1.278 26 C 0.136 3.864 27 H 0.038 0.962 28 C 0.119 3.881 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.418 0.582 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.041 0.959 41 H 0.029 0.971 42 H 0.096 0.904 43 H 0.256 0.744 44 H 0.079 0.921 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.991 -20.695 3.879 23.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.887 5.887 3 S 2.733 3.267 4 O -0.931 6.931 5 O -0.925 6.925 6 C -0.802 4.802 7 C 0.326 3.674 8 O -0.409 6.409 9 N -0.329 5.329 10 C -0.016 4.016 11 C -0.165 4.165 12 C 0.016 3.984 13 H 0.072 0.928 14 O -0.308 6.308 15 C -0.039 4.039 16 C 0.017 3.983 17 N -0.311 5.311 18 C -0.392 4.392 19 H 0.090 0.910 20 C -0.191 4.191 21 N -0.543 5.543 22 Si 0.733 3.267 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.203 1.203 26 C 0.028 3.972 27 H 0.056 0.944 28 C -0.002 4.002 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.252 0.748 33 H 0.176 0.824 34 H 0.178 0.822 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.059 0.941 41 H 0.047 0.953 42 H 0.114 0.886 43 H 0.066 0.934 44 H 0.097 0.903 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.324 -19.797 2.707 22.050 hybrid contribution 0.779 0.017 0.887 1.181 sum -8.545 -19.780 3.594 21.845 Atomic orbital electron populations 1.21536 0.78794 1.04334 1.02113 1.55625 1.16075 1.24959 1.92084 1.04210 0.73626 0.73142 0.75760 1.93602 1.32111 1.81101 1.86309 1.93605 1.78864 1.72016 1.48008 1.31107 1.12516 1.07823 1.28714 1.19058 0.81442 0.84139 0.82791 1.90882 1.39383 1.72224 1.38425 1.48138 1.47012 1.20785 1.16986 1.21903 0.92378 0.97165 0.90195 1.21966 0.97875 0.93844 1.02780 1.22460 0.91467 0.87116 0.97402 0.92799 1.87747 1.33673 1.22125 1.87274 1.23343 0.96377 0.85529 0.98629 1.21446 0.93098 0.91935 0.91796 1.44017 1.06522 1.06956 1.73640 1.19129 0.82474 0.94443 1.43105 0.90990 1.25084 0.97877 0.97484 0.98655 1.70015 1.33297 1.02992 1.48017 0.86255 0.84903 0.77437 0.78069 1.21143 1.21476 1.20291 1.21285 0.93521 0.87862 0.94535 0.94400 1.21939 0.94583 0.78962 1.04712 0.91096 0.89864 0.92254 0.74787 0.82358 0.82207 0.89472 0.90534 0.89980 0.90582 0.89995 0.94068 0.95330 0.88615 0.93420 0.90310 0.87442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.34 11.03 59.84 0.66 1.00 16 2 N -1.13 -7.34 6.08 -16.64 -0.10 -7.44 16 3 S 2.65 30.86 4.60 -107.50 -0.49 30.36 16 4 O -0.94 -14.40 18.08 -57.55 -1.04 -15.44 16 5 O -0.94 -14.79 17.73 -57.55 -1.02 -15.81 16 6 C -0.67 -6.15 4.85 36.01 0.17 -5.98 16 7 C 0.54 8.34 7.71 -10.99 -0.08 8.26 16 8 O -0.53 -10.76 15.27 5.56 0.08 -10.68 16 9 N -0.60 -8.91 2.99 -172.38 -0.52 -9.42 16 10 C 0.11 1.11 6.32 -3.39 -0.02 1.08 16 11 C -0.13 -1.55 5.86 -26.38 -0.15 -1.71 16 12 C 0.08 1.29 2.47 -26.64 -0.07 1.23 16 13 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 14 O -0.39 -7.34 10.47 -35.23 -0.37 -7.71 16 15 C 0.04 0.74 6.96 37.26 0.26 1.00 16 16 C 0.14 3.35 5.42 -3.47 -0.02 3.33 16 17 N -0.59 -14.37 3.04 -164.38 -0.50 -14.87 16 18 C -0.26 -6.97 8.87 -15.06 -0.13 -7.10 16 19 H 0.07 1.85 6.28 -52.48 -0.33 1.52 16 20 C 0.01 0.23 4.99 -17.43 -0.09 0.14 16 21 N -0.90 -25.70 11.16 55.49 0.62 -25.08 16 22 Si 0.90 21.54 29.58 -169.99 -5.03 16.51 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.14 2.82 3.02 -67.54 -0.20 2.61 16 27 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 28 C 0.12 2.28 4.49 -3.72 -0.02 2.26 16 29 H 0.07 0.38 8.04 -51.93 -0.42 -0.03 16 30 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.06 0.13 7.73 -51.93 -0.40 -0.27 16 32 H 0.42 1.96 8.92 -34.47 -0.31 1.65 16 33 H 0.16 0.87 7.28 -51.93 -0.38 0.50 16 34 H 0.16 0.83 7.96 -51.92 -0.41 0.41 16 35 H 0.09 0.56 5.91 -51.93 -0.31 0.25 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.10 2.44 6.23 -51.93 -0.32 2.12 16 43 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.08 1.48 7.37 -51.93 -0.38 1.10 16 45 H 0.11 2.40 6.80 -51.93 -0.35 2.05 16 LS Contribution 366.39 15.07 5.52 5.52 Total: -1.00 -38.32 366.39 -9.09 -47.41 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.55 Total: 0.52 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 0.31 Total: 6.13 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -0.50 Total: -56.82 kcal Atomic # 8 Polarization: -47.30 SS G_CDS: -2.34 Total: -49.64 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Atomic # 16 Polarization: 30.86 SS G_CDS: -0.49 Total: 30.36 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -38.32 -9.09 -47.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177170434.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.709 kcal (2) G-P(sol) polarization free energy of solvation -38.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds