Wall clock time and date at job start Wed Apr 1 2020 05:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 S 1.65602 * 120.00208 * 2 1 4 4 O 1.42101 * 104.27821 * 181.07051 * 3 2 1 5 5 O 1.42102 * 104.27811 * 308.93385 * 3 2 1 6 6 C 1.81408 * 104.44575 * 65.00214 * 3 2 1 7 7 C 1.50703 * 109.46995 * 179.97438 * 6 3 2 8 8 O 1.21282 * 120.00088 * 0.02562 * 7 6 3 9 9 N 1.34772 * 120.00204 * 180.02562 * 7 6 3 10 10 C 1.46850 * 120.40735 * 359.71986 * 9 7 6 11 11 C 1.53888 * 109.40555 * 232.42403 * 10 9 7 12 12 C 1.52782 * 108.38706 * 306.05836 * 11 10 9 13 13 H 1.09003 * 109.34533 * 303.13596 * 12 11 10 14 14 O 1.42610 * 110.73426 * 182.58927 * 12 11 10 15 15 C 1.43143 * 113.63013 * 176.62191 * 14 12 11 16 16 C 1.53192 * 109.74467 * 61.68990 * 15 14 12 17 17 N 1.47358 * 108.79795 * 308.78585 * 16 15 14 18 18 C 1.36930 * 121.30525 * 230.25742 * 17 16 15 19 19 H 1.08003 * 119.99651 * 152.51819 * 18 17 16 20 20 C 1.38812 * 120.00373 * 332.51398 * 18 17 16 21 21 N 1.31617 * 119.99848 * 344.73327 * 20 18 17 22 22 Si 1.86798 * 120.00244 * 164.72937 * 20 18 17 23 23 H 1.48501 * 109.47001 * 94.82722 * 22 20 18 24 24 H 1.48497 * 109.47260 * 214.83069 * 22 20 18 25 25 H 1.48504 * 109.47077 * 334.83227 * 22 20 18 26 26 C 1.46877 * 117.38488 * 50.24063 * 17 16 15 27 27 H 1.08998 * 110.20797 * 67.97123 * 26 17 16 28 28 C 1.47133 * 120.41288 * 180.02562 * 9 7 6 29 29 H 1.09001 * 109.47175 * 59.99552 * 1 2 3 30 30 H 1.08998 * 109.47343 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47028 * 299.99562 * 1 2 3 32 32 H 0.97000 * 120.00145 * 180.28262 * 2 1 3 33 33 H 1.08989 * 109.47314 * 299.99870 * 6 3 2 34 34 H 1.09000 * 109.47041 * 60.00047 * 6 3 2 35 35 H 1.08998 * 109.51026 * 352.19120 * 10 9 7 36 36 H 1.09003 * 109.50004 * 112.32451 * 10 9 7 37 37 H 1.09003 * 109.55208 * 186.53354 * 11 10 9 38 38 H 1.09000 * 110.15015 * 65.93486 * 11 10 9 39 39 H 1.09000 * 109.42451 * 181.77007 * 15 14 12 40 40 H 1.09002 * 109.42961 * 301.65735 * 15 14 12 41 41 H 1.09001 * 109.58560 * 68.57703 * 16 15 14 42 42 H 1.08998 * 109.58374 * 188.99520 * 16 15 14 43 43 H 0.97000 * 120.00260 * 179.97438 * 21 20 18 44 44 H 1.08994 * 109.72395 * 246.42408 * 28 9 7 45 45 H 1.08996 * 109.72371 * 7.05834 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6606 1.0491 -0.0257 5 8 1.7188 2.1704 -1.0712 6 6 1.8764 2.1972 1.5922 7 6 2.5793 3.5249 1.7121 8 8 3.2907 3.9179 0.8119 9 7 2.4172 4.2756 2.8195 10 6 1.5530 3.8114 3.9123 11 6 0.5351 4.9113 4.2617 12 6 1.3000 6.2023 4.5486 13 1 2.0185 6.0260 5.3491 14 8 0.4060 7.2432 4.9372 15 6 1.0655 8.4621 5.2954 16 6 1.8412 9.0041 4.0908 17 7 2.6886 7.9276 3.5482 18 6 4.0212 8.1259 3.3036 19 1 4.7070 7.2924 3.3410 20 6 4.4908 9.3982 3.0075 21 7 3.6463 10.3484 2.6663 22 14 6.3210 9.7618 3.0933 23 1 6.9200 9.6079 1.7432 24 1 6.5275 11.1527 3.5709 25 1 6.9705 8.8138 4.0339 26 6 2.0478 6.6333 3.2806 27 1 1.3441 6.7256 2.4533 28 6 3.0987 5.5735 2.9459 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.9500 -0.8400 -0.0041 33 1 0.7988 2.3496 1.6512 34 1 2.1958 1.5429 2.4033 35 1 1.0200 2.9138 3.5986 36 1 2.1624 3.5865 4.7876 37 1 -0.0304 4.6175 5.1460 38 1 -0.1482 5.0694 3.4272 39 1 0.3240 9.1967 5.6094 40 1 1.7577 8.2723 6.1158 41 1 1.1408 9.3384 3.3254 42 1 2.4677 9.8388 4.4052 43 1 3.9743 11.2376 2.4598 44 1 3.8385 5.5243 3.7447 45 1 3.5888 5.8247 2.0053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177170434.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:05 Heat of formation + Delta-G solvation = -141.586813 kcal Electronic energy + Delta-G solvation = -30296.552731 eV Core-core repulsion = 26055.344048 eV Total energy + Delta-G solvation = -4241.208683 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.65837 -40.21419 -38.25104 -37.63591 -37.05659 -36.56952 -35.85071 -33.77254 -33.10225 -31.97561 -30.90736 -28.82391 -26.75474 -26.66452 -25.52804 -23.78713 -23.01205 -21.55640 -20.95560 -20.02331 -19.21147 -18.77256 -18.21820 -17.67559 -17.49303 -17.24996 -17.04150 -16.74853 -16.43356 -16.20563 -15.84109 -15.59520 -15.46587 -15.04856 -14.74541 -14.66463 -14.57791 -14.17484 -13.95228 -13.75082 -13.57945 -13.38032 -13.23290 -13.15126 -13.04418 -12.87006 -12.74641 -12.51348 -12.44397 -12.36908 -12.14821 -12.01756 -11.92966 -11.79861 -11.36741 -11.25606 -10.79187 -10.55164 -10.47673 -9.87979 -8.77397 -7.95180 -5.43989 -0.91969 1.23228 1.41702 1.43988 1.52573 1.58455 1.90529 2.43529 2.74594 2.83173 3.13411 3.17996 3.21112 3.40807 3.78233 3.90044 3.92639 4.01507 4.15870 4.16285 4.21355 4.28835 4.38950 4.46954 4.50693 4.54578 4.65675 4.74149 4.78662 4.84019 4.95801 4.96775 5.05528 5.10060 5.10767 5.26040 5.34548 5.51178 5.57770 6.11368 6.14452 6.22755 6.31961 6.76784 7.01283 7.68823 8.23548 9.11003 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.003376 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.581703 B = 8292.312945 C = 9695.743402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -1.108 6.108 3 S 2.645 3.355 4 O -0.991 6.991 5 O -0.992 6.992 6 C -0.652 4.652 7 C 0.526 3.474 8 O -0.595 6.595 9 N -0.595 5.595 10 C 0.099 3.901 11 C -0.119 4.119 12 C 0.078 3.922 13 H 0.060 0.940 14 O -0.391 6.391 15 C 0.053 3.947 16 C 0.146 3.854 17 N -0.606 5.606 18 C -0.264 4.264 19 H 0.075 0.925 20 C -0.047 4.047 21 N -0.934 5.934 22 Si 0.965 3.035 23 H -0.293 1.293 24 H -0.287 1.287 25 H -0.264 1.264 26 C 0.131 3.869 27 H 0.005 0.995 28 C 0.131 3.869 29 H 0.053 0.947 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.429 0.571 33 H 0.208 0.792 34 H 0.215 0.785 35 H 0.144 0.856 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.071 0.929 39 H 0.109 0.891 40 H 0.051 0.949 41 H -0.005 1.005 42 H 0.069 0.931 43 H 0.251 0.749 44 H 0.080 0.920 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.981 -24.393 6.996 28.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.872 5.872 3 S 2.735 3.265 4 O -0.981 6.981 5 O -0.981 6.981 6 C -0.781 4.781 7 C 0.313 3.687 8 O -0.477 6.477 9 N -0.326 5.326 10 C -0.022 4.022 11 C -0.157 4.157 12 C 0.018 3.982 13 H 0.078 0.922 14 O -0.310 6.310 15 C -0.025 4.025 16 C 0.021 3.979 17 N -0.331 5.331 18 C -0.394 4.394 19 H 0.093 0.907 20 C -0.243 4.243 21 N -0.580 5.580 22 Si 0.793 3.207 23 H -0.220 1.220 24 H -0.213 1.213 25 H -0.188 1.188 26 C 0.024 3.976 27 H 0.023 0.977 28 C 0.008 3.992 29 H 0.071 0.929 30 H 0.130 0.870 31 H 0.111 0.889 32 H 0.265 0.735 33 H 0.225 0.775 34 H 0.232 0.768 35 H 0.162 0.838 36 H 0.120 0.880 37 H 0.139 0.861 38 H 0.089 0.911 39 H 0.127 0.873 40 H 0.069 0.931 41 H 0.013 0.987 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.099 0.901 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.343 -23.571 5.837 26.801 hybrid contribution 1.307 1.119 -0.101 1.723 sum -10.036 -22.452 5.736 25.253 Atomic orbital electron populations 1.21924 0.76825 1.06530 1.02984 1.55109 1.17039 1.23315 1.91766 1.03696 0.72719 0.73683 0.76358 1.93534 1.35271 1.81966 1.87327 1.93543 1.79388 1.73777 1.51427 1.30965 1.14736 1.04267 1.28164 1.20077 0.80902 0.85965 0.81726 1.90869 1.42182 1.74077 1.40589 1.48205 1.47128 1.18905 1.18381 1.22441 0.91968 0.98110 0.89655 1.22045 0.97990 0.91367 1.04343 1.22603 0.91999 0.88694 0.94879 0.92194 1.87758 1.34063 1.22133 1.87039 1.23154 0.96754 0.86356 0.96208 1.21311 0.92275 0.91592 0.92756 1.44324 1.06287 1.08572 1.73912 1.19456 0.83867 0.94446 1.41594 0.90714 1.25838 1.01661 0.97590 0.99206 1.70169 1.34883 1.03095 1.49859 0.85297 0.80417 0.77364 0.77629 1.22022 1.21323 1.18828 1.21468 0.93519 0.86786 0.95850 0.97719 1.21426 0.94421 0.81248 1.02151 0.92857 0.87006 0.88950 0.73469 0.77495 0.76763 0.83781 0.88026 0.86116 0.91060 0.87329 0.93057 0.98712 0.91225 0.93944 0.90145 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.29 11.03 127.77 1.41 1.70 16 2 N -1.11 -11.13 6.08 -206.55 -1.25 -12.38 16 3 S 2.65 58.50 4.60 -56.49 -0.26 58.24 16 4 O -0.99 -30.59 18.08 -127.64 -2.31 -32.90 16 5 O -0.99 -32.06 17.73 -127.64 -2.26 -34.32 16 6 C -0.65 -8.92 4.85 71.24 0.35 -8.58 16 7 C 0.53 15.38 7.71 87.66 0.68 16.06 16 8 O -0.60 -25.12 15.27 -3.04 -0.05 -25.17 16 9 N -0.59 -16.41 2.99 -817.68 -2.44 -18.85 16 10 C 0.10 1.46 6.32 86.61 0.55 2.01 16 11 C -0.12 -2.34 5.86 30.82 0.18 -2.16 16 12 C 0.08 2.48 2.47 30.65 0.08 2.56 16 13 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 14 O -0.39 -13.92 10.47 -148.98 -1.56 -15.48 16 15 C 0.05 1.97 6.96 72.05 0.50 2.47 16 16 C 0.15 7.13 5.42 86.28 0.47 7.60 16 17 N -0.61 -30.80 3.04 -673.96 -2.05 -32.85 16 18 C -0.26 -14.55 8.87 84.03 0.75 -13.81 16 19 H 0.08 3.99 6.28 -2.91 -0.02 3.97 16 20 C -0.05 -2.67 4.99 84.86 0.42 -2.25 16 21 N -0.93 -56.12 11.16 21.65 0.24 -55.88 16 22 Si 0.97 45.79 29.58 68.60 2.03 47.82 16 23 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 24 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 25 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 26 C 0.13 5.53 3.02 45.04 0.14 5.67 16 27 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 28 C 0.13 5.09 4.49 86.24 0.39 5.48 16 29 H 0.05 0.46 8.04 -2.39 -0.02 0.44 16 30 H 0.11 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.09 -0.16 7.73 -2.39 -0.02 -0.18 16 32 H 0.43 2.80 8.92 -96.75 -0.86 1.94 16 33 H 0.21 0.82 7.28 -2.40 -0.02 0.80 16 34 H 0.22 0.62 7.96 -2.39 -0.02 0.60 16 35 H 0.14 0.56 5.91 -2.39 -0.01 0.55 16 36 H 0.10 1.13 8.14 -2.39 -0.02 1.12 16 37 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 40 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 41 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 42 H 0.07 3.73 6.23 -2.39 -0.01 3.72 16 43 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 44 H 0.08 3.05 7.37 -2.39 -0.02 3.03 16 45 H 0.06 2.91 6.80 -2.39 -0.02 2.90 16 Total: -1.00 -95.76 366.39 -3.86 -99.62 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: 0.16 Total: 5.42 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: 5.90 Total: 16.74 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -5.51 Total: -119.96 kcal Atomic # 8 Polarization: -101.70 SS G_CDS: -6.18 Total: -107.88 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Atomic # 16 Polarization: 58.50 SS G_CDS: -0.26 Total: 58.24 kcal Total: -95.76 -3.86 -99.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177170434.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.970 kcal (2) G-P(sol) polarization free energy of solvation -95.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds