Wall clock time and date at job start Wed Apr 1 2020 06:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42101 * 108.57770 * 2 1 4 4 O 1.42105 * 108.57718 * 228.98135 * 2 1 3 5 5 C 1.81400 * 101.92353 * 114.49267 * 2 1 3 6 6 C 1.50696 * 109.46915 * 180.02562 * 5 2 1 7 7 O 1.21286 * 120.00306 * 359.97438 * 6 5 2 8 8 N 1.34778 * 120.00030 * 179.97438 * 6 5 2 9 9 C 1.47207 * 120.81118 * 0.14238 * 8 6 5 10 10 C 1.53195 * 108.85456 * 126.33789 * 9 8 6 11 11 C 1.53038 * 109.31078 * 54.64814 * 10 9 8 12 12 C 1.53035 * 109.54175 * 298.63655 * 11 10 9 13 13 H 1.08997 * 109.52301 * 301.39793 * 12 11 10 14 14 N 1.46900 * 109.49950 * 181.31564 * 12 11 10 15 15 C 1.46908 * 110.99979 * 85.16233 * 14 12 11 16 16 C 1.50694 * 109.47319 * 180.02562 * 15 14 12 17 17 O 1.21295 * 119.99731 * 359.97438 * 16 15 14 18 18 N 1.34772 * 119.99994 * 180.02562 * 16 15 14 19 19 C 1.37106 * 120.00029 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99672 * 359.97438 * 19 18 16 21 21 C 1.38942 * 120.00086 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00186 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99998 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47226 * 90.00277 * 23 21 19 25 25 H 1.48500 * 109.47121 * 210.00127 * 23 21 19 26 26 H 1.48500 * 109.47236 * 330.00278 * 23 21 19 27 27 C 1.46926 * 120.63336 * 180.02562 * 8 6 5 28 28 H 1.09002 * 109.47142 * 305.50320 * 1 2 3 29 29 H 1.08995 * 109.47578 * 65.50716 * 1 2 3 30 30 H 1.09000 * 109.47231 * 185.50918 * 1 2 3 31 31 H 1.08992 * 109.47231 * 59.99846 * 5 2 1 32 32 H 1.09000 * 109.46975 * 299.99366 * 5 2 1 33 33 H 1.08996 * 109.53610 * 6.53286 * 9 8 6 34 34 H 1.09002 * 109.68003 * 246.22753 * 9 8 6 35 35 H 1.09002 * 109.49713 * 294.70061 * 10 9 8 36 36 H 1.09001 * 109.52547 * 174.62020 * 10 9 8 37 37 H 1.09003 * 109.46001 * 178.60988 * 11 10 9 38 38 H 1.09005 * 109.44940 * 58.65266 * 11 10 9 39 39 H 1.00898 * 111.00577 * 209.11259 * 14 12 11 40 40 H 1.09005 * 109.46447 * 300.00133 * 15 14 12 41 41 H 1.09000 * 109.46855 * 59.99668 * 15 14 12 42 42 H 0.96996 * 120.00345 * 359.97438 * 18 16 15 43 43 H 0.97000 * 119.99855 * 180.02562 * 22 21 19 44 44 H 1.09002 * 109.58861 * 113.82042 * 27 8 6 45 45 H 1.08996 * 109.58519 * 353.53933 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8840 -1.0163 5 6 2.1888 -0.7358 1.6151 6 6 3.6827 -0.8173 1.7955 7 8 4.4218 -0.4187 0.9204 8 7 4.1975 -1.3331 2.9293 9 6 3.3170 -1.8250 4.0016 10 6 3.7125 -3.2645 4.3456 11 6 5.2036 -3.3118 4.6870 12 6 6.0211 -2.8632 3.4736 13 1 5.8018 -3.5129 2.6263 14 7 7.4531 -2.9390 3.7920 15 6 7.9735 -4.2928 3.5579 16 6 9.4417 -4.3319 3.8952 17 8 9.9999 -3.3304 4.2911 18 7 10.1348 -5.4793 3.7559 19 6 11.4707 -5.5147 4.0623 20 1 11.9677 -4.6230 4.4148 21 6 12.1851 -6.6978 3.9192 22 7 11.5805 -7.7827 3.4898 23 14 14.0054 -6.7459 4.3359 24 1 14.1765 -7.1063 5.7663 25 1 14.6812 -7.7589 3.4860 26 1 14.6057 -5.4107 4.0867 27 6 5.6518 -1.4187 3.1200 28 1 -0.3633 0.5968 0.8366 29 1 -0.3634 0.4260 -0.9351 30 1 -0.3634 -1.0229 0.0987 31 1 1.7611 -1.7370 1.6663 32 1 1.7612 -0.1172 2.4042 33 1 2.2815 -1.8017 3.6623 34 1 3.4265 -1.1950 4.8844 35 1 3.5145 -3.9105 3.4903 36 1 3.1320 -3.6069 5.2023 37 1 5.4823 -4.3306 4.9562 38 1 5.4049 -2.6465 5.5267 39 1 7.9770 -2.2547 3.2673 40 1 7.4372 -5.0021 4.1884 41 1 7.8337 -4.5597 2.5104 42 1 9.6885 -6.2801 3.4390 43 1 12.0793 -8.6087 3.3903 44 1 5.9538 -0.7551 3.9303 45 1 6.1587 -1.1264 2.2004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207562861.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:21:01 Heat of formation + Delta-G solvation = -129.022179 kcal Electronic energy + Delta-G solvation = -28323.273742 eV Core-core repulsion = 24082.609903 eV Total energy + Delta-G solvation = -4240.663839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.89 seconds Orbital eigenvalues (eV) -40.67760 -38.56246 -37.79440 -37.35112 -36.34446 -35.27507 -33.87368 -32.60555 -31.67701 -31.20847 -30.17460 -29.44621 -26.40880 -25.58965 -24.00681 -22.83589 -20.98787 -19.78440 -19.23511 -19.08702 -18.05664 -17.89472 -17.16820 -16.80356 -16.45972 -16.18579 -15.74962 -15.57142 -15.35184 -14.93822 -14.64233 -14.35655 -14.15756 -13.93309 -13.82801 -13.76648 -13.66399 -13.61710 -13.25117 -12.92387 -12.64590 -12.40173 -12.33451 -12.27598 -11.94758 -11.63180 -11.54638 -11.49625 -11.33232 -11.14195 -11.10449 -10.94034 -10.84018 -10.52644 -10.38731 -10.21394 -9.50667 -9.09533 -8.47798 -8.13442 -7.96091 -6.41387 -3.82222 -0.59868 2.01095 2.24455 2.36197 3.18551 3.24953 3.27217 3.33372 3.50086 3.79842 3.90403 4.03289 4.09154 4.22816 4.23597 4.42669 4.51178 4.54621 4.56356 4.62999 4.79419 4.96571 5.06367 5.12828 5.14397 5.24572 5.30986 5.43178 5.55461 5.63774 5.71741 5.78650 5.92318 5.96181 5.99675 6.15284 6.29033 6.82906 7.14843 7.52225 7.55742 7.59382 8.06442 8.61223 9.18118 9.54264 10.05538 10.76338 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.023127 B = 0.001854 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.437861 B =15095.090268 C =15524.552045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.663 4.663 2 S 2.453 3.547 3 O -0.920 6.920 4 O -0.919 6.919 5 C -0.660 4.660 6 C 0.542 3.458 7 O -0.527 6.527 8 N -0.597 5.597 9 C 0.102 3.898 10 C -0.136 4.136 11 C -0.111 4.111 12 C 0.074 3.926 13 H 0.048 0.952 14 N -0.661 5.661 15 C 0.052 3.948 16 C 0.441 3.559 17 O -0.583 6.583 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 C 0.107 3.893 28 H 0.129 0.871 29 H 0.134 0.866 30 H 0.130 0.870 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.352 0.648 40 H 0.086 0.914 41 H 0.045 0.955 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.085 0.915 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.582 10.226 -1.094 31.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.812 4.812 2 S 2.629 3.371 3 O -0.917 6.917 4 O -0.916 6.916 5 C -0.787 4.787 6 C 0.328 3.672 7 O -0.404 6.404 8 N -0.330 5.330 9 C -0.021 4.021 10 C -0.175 4.175 11 C -0.149 4.149 12 C -0.037 4.037 13 H 0.066 0.934 14 N -0.294 5.294 15 C -0.081 4.081 16 C 0.226 3.774 17 O -0.467 6.467 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.015 4.015 28 H 0.148 0.852 29 H 0.152 0.848 30 H 0.148 0.852 31 H 0.178 0.822 32 H 0.178 0.822 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.173 0.827 40 H 0.104 0.896 41 H 0.063 0.937 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.103 0.897 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -28.226 11.108 -1.282 30.360 hybrid contribution -0.124 -1.193 -0.096 1.203 sum -28.350 9.915 -1.378 30.066 Atomic orbital electron populations 1.30397 1.26896 1.11706 1.12161 1.07278 0.77610 0.75922 0.76299 1.93608 1.78723 1.34004 1.85368 1.93616 1.78687 1.67168 1.52132 1.30913 1.03197 1.16368 1.28247 1.19099 0.87601 0.78140 0.82357 1.90891 1.60538 1.48114 1.40838 1.47953 1.07636 1.60621 1.16828 1.21962 0.93764 0.95886 0.90462 1.21961 0.97656 0.95593 1.02303 1.21567 0.92397 1.02821 0.98140 1.21850 0.89729 0.95327 0.96811 0.93422 1.60108 1.00768 1.05818 1.62695 1.21720 0.95682 0.91164 0.99509 1.19768 0.87701 0.84804 0.85105 1.90528 1.70639 1.34417 1.51083 1.41860 1.09855 1.10073 1.58215 1.19707 0.84310 0.97573 1.41266 0.87890 1.25270 1.00601 0.94882 0.97249 1.69613 1.37355 1.00923 1.46431 0.85844 0.81915 0.78181 0.78262 1.20405 1.20942 1.19406 1.21883 0.78879 0.97047 1.03713 0.85202 0.84794 0.85180 0.82200 0.82201 0.89678 0.90352 0.91388 0.90033 0.91097 0.90671 0.82729 0.89598 0.93724 0.77469 0.91875 0.89675 0.88507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.14 10.62 101.05 1.07 -0.07 16 2 S 2.45 17.68 4.60 -107.50 -0.49 17.19 16 3 O -0.92 -10.73 17.95 -59.54 -1.07 -11.80 16 4 O -0.92 -10.97 17.95 -59.52 -1.07 -12.04 16 5 C -0.66 -3.16 4.64 36.00 0.17 -3.00 16 6 C 0.54 5.80 7.72 -10.99 -0.08 5.72 16 7 O -0.53 -8.17 15.04 2.55 0.04 -8.13 16 8 N -0.60 -5.62 2.98 -172.52 -0.51 -6.13 16 9 C 0.10 0.57 6.35 -3.56 -0.02 0.55 16 10 C -0.14 -0.88 6.08 -26.61 -0.16 -1.04 16 11 C -0.11 -1.09 5.40 -26.69 -0.14 -1.24 16 12 C 0.07 0.89 2.65 -67.57 -0.18 0.71 16 13 H 0.05 0.61 7.80 -51.93 -0.41 0.20 16 14 N -0.66 -10.44 5.93 -107.84 -0.64 -11.08 16 15 C 0.05 0.91 5.97 -4.97 -0.03 0.88 16 16 C 0.44 10.45 7.82 -10.99 -0.09 10.36 16 17 O -0.58 -15.88 15.78 5.54 0.09 -15.79 16 18 N -0.56 -14.37 5.29 -10.97 -0.06 -14.43 16 19 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.66 13.05 55.50 0.72 -23.94 16 23 Si 0.93 21.22 29.55 -169.99 -5.02 16.19 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 C 0.11 1.23 5.69 -3.69 -0.02 1.21 16 28 H 0.13 -0.07 8.14 -51.92 -0.42 -0.49 16 29 H 0.13 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.13 -0.05 8.14 -51.92 -0.42 -0.48 16 31 H 0.16 0.17 7.70 -51.93 -0.40 -0.23 16 32 H 0.16 0.12 7.95 -51.92 -0.41 -0.29 16 33 H 0.08 0.20 5.97 -51.93 -0.31 -0.11 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.76 7.44 -51.93 -0.39 0.37 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.35 5.88 8.06 -39.29 -0.32 5.56 16 40 H 0.09 1.38 7.43 -51.93 -0.39 0.99 16 41 H 0.04 0.73 8.06 -51.93 -0.42 0.31 16 42 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 43 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.10 1.28 7.00 -51.93 -0.36 0.92 16 LS Contribution 383.46 15.07 5.78 5.78 Total: -1.00 -41.17 383.46 -8.58 -49.75 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -6.61 Total: 8.40 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 0.27 Total: 6.02 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.49 Total: -55.58 kcal Atomic # 8 Polarization: -45.74 SS G_CDS: -2.01 Total: -47.76 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 17.68 SS G_CDS: -0.49 Total: 17.19 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -41.17 -8.58 -49.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207562861.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.274 kcal (2) G-P(sol) polarization free energy of solvation -41.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.89 seconds