Wall clock time and date at job start Wed Apr 1 2020 05:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 S 1.65600 * 119.99818 * 2 1 4 4 O 1.42106 * 104.27813 * 181.07255 * 3 2 1 5 5 O 1.42101 * 104.27750 * 308.92859 * 3 2 1 6 6 C 1.81397 * 104.45088 * 65.00124 * 3 2 1 7 7 C 1.53000 * 109.47200 * 179.97438 * 6 3 2 8 8 C 1.50698 * 109.47311 * 180.02562 * 7 6 3 9 9 O 1.21284 * 119.99695 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00407 * 180.02562 * 8 7 6 11 11 C 1.47047 * 120.03721 * 359.97438 * 10 8 7 12 12 C 1.53572 * 107.23306 * 130.35974 * 11 10 8 13 13 O 1.42615 * 108.29473 * 55.94264 * 12 11 10 14 14 C 1.42785 * 115.84227 * 295.40135 * 13 12 11 15 15 H 1.08997 * 111.86597 * 290.15510 * 14 13 12 16 16 C 1.54897 * 107.17288 * 166.91345 * 14 13 12 17 17 N 1.45987 * 107.28976 * 266.41555 * 16 14 13 18 18 C 1.36937 * 125.55023 * 180.35689 * 17 16 14 19 19 H 1.08001 * 120.00205 * 180.02562 * 18 17 16 20 20 C 1.38820 * 119.99888 * 0.05618 * 18 17 16 21 21 N 1.31618 * 119.99801 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99933 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.46984 * 89.99965 * 22 20 18 24 24 H 1.48497 * 109.47060 * 210.00226 * 22 20 18 25 25 H 1.48500 * 109.47044 * 330.00149 * 22 20 18 26 26 C 1.47610 * 108.80752 * 0.40531 * 17 16 14 27 27 C 1.45525 * 120.04159 * 179.72685 * 10 8 7 28 28 H 1.08996 * 110.29788 * 345.57527 * 27 10 8 29 29 H 1.09002 * 109.47391 * 59.99851 * 1 2 3 30 30 H 1.09001 * 109.46813 * 299.99907 * 1 2 3 31 31 H 1.09004 * 109.47041 * 180.02562 * 1 2 3 32 32 H 0.97000 * 120.00420 * 180.02562 * 2 1 3 33 33 H 1.08992 * 109.47104 * 300.00206 * 6 3 2 34 34 H 1.08998 * 109.46952 * 60.00008 * 6 3 2 35 35 H 1.08998 * 109.47128 * 300.00502 * 7 6 3 36 36 H 1.08998 * 109.46949 * 60.00267 * 7 6 3 37 37 H 1.08995 * 109.90598 * 249.78895 * 11 10 8 38 38 H 1.09002 * 109.90117 * 10.85578 * 11 10 8 39 39 H 1.08998 * 109.70432 * 175.64614 * 12 11 10 40 40 H 1.09005 * 109.69969 * 296.20626 * 12 11 10 41 41 H 1.08994 * 109.89527 * 26.07797 * 16 14 13 42 42 H 1.09003 * 109.89211 * 147.28745 * 16 14 13 43 43 H 0.97007 * 119.99358 * 179.97438 * 21 20 18 44 44 H 1.08999 * 110.42394 * 217.64610 * 26 17 16 45 45 H 1.09002 * 110.52430 * 95.22714 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 3.6606 1.0493 -0.0258 5 8 1.7188 2.1703 -1.0713 6 6 1.8764 2.1973 1.5920 7 6 2.5899 3.5453 1.7137 8 6 2.2444 4.1791 3.0365 9 8 1.5002 3.6089 3.8060 10 7 2.7613 5.3798 3.3640 11 6 3.6632 6.0721 2.4314 12 6 3.1491 7.5118 2.2856 13 8 3.0793 8.0960 3.5847 14 6 2.1427 7.5028 4.4844 15 1 1.1129 7.7034 4.1889 16 6 2.4593 8.0480 5.8993 17 7 3.3582 7.0933 6.5410 18 6 3.8680 7.2067 7.8069 19 1 4.5283 6.4445 8.1934 20 6 3.5354 8.3010 8.5936 21 7 2.7306 9.2298 8.1226 22 14 4.2303 8.4553 10.3207 23 1 5.5169 9.1950 10.2723 24 1 3.2673 9.1926 11.1776 25 1 4.4589 7.1009 10.8851 26 6 3.6276 5.9875 5.6011 27 6 2.4235 5.9953 4.6387 28 1 1.5647 5.4938 5.0849 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.9500 -0.8400 -0.0004 33 1 0.7988 2.3496 1.6510 34 1 2.1958 1.5431 2.4032 35 1 3.6675 3.3926 1.6548 36 1 2.2708 4.1997 0.9025 37 1 4.6770 6.0789 2.8317 38 1 3.6502 5.5723 1.4628 39 1 3.8341 8.0852 1.6611 40 1 2.1579 7.5038 1.8320 41 1 2.9418 9.0223 5.8220 42 1 1.5399 8.1318 6.4788 43 1 2.4980 9.9943 8.6725 44 1 3.6813 5.0389 6.1352 45 1 4.5529 6.1679 5.0539 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001217876081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:10 Heat of formation + Delta-G solvation = -135.693672 kcal Electronic energy + Delta-G solvation = -29559.466182 eV Core-core repulsion = 25318.513045 eV Total energy + Delta-G solvation = -4240.953137 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.87491 -39.90087 -38.21383 -37.55037 -37.08045 -36.04163 -35.85354 -34.58328 -33.90134 -31.47309 -29.38802 -29.25307 -26.89615 -26.79270 -25.61266 -24.49019 -22.33347 -21.91158 -20.35420 -19.88608 -19.14548 -19.00221 -18.50413 -17.93335 -17.48598 -17.20205 -16.97564 -16.80844 -16.51759 -16.16995 -15.78591 -15.58073 -15.37253 -15.16133 -14.79220 -14.61711 -14.37232 -14.14029 -13.84194 -13.75817 -13.63507 -13.29252 -13.24150 -13.13074 -12.98521 -12.76414 -12.69051 -12.63181 -12.53332 -12.44223 -12.16770 -12.07974 -11.94872 -11.84379 -11.47011 -11.12052 -10.90011 -10.78456 -10.44983 -9.64759 -8.96470 -7.89201 -5.26399 -0.79270 1.43430 1.45657 1.47808 1.56339 1.64955 1.81955 2.47633 2.72920 2.80236 3.22121 3.22943 3.30575 3.41608 3.50380 3.63409 3.79943 3.85436 4.00393 4.05919 4.14964 4.22481 4.28284 4.33877 4.39141 4.45971 4.53590 4.66118 4.74284 4.79024 4.81569 4.92089 4.93763 4.95251 5.03839 5.33142 5.37591 5.42063 5.64652 6.10908 6.13253 6.24486 6.37763 6.98154 7.05257 7.69379 8.32480 9.21257 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.022621 B = 0.002397 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.480207 B =11676.559540 C =12214.047413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -1.118 6.118 3 S 2.641 3.359 4 O -0.987 6.987 5 O -0.982 6.982 6 C -0.609 4.609 7 C -0.139 4.139 8 C 0.518 3.482 9 O -0.574 6.574 10 N -0.599 5.599 11 C 0.061 3.939 12 C 0.037 3.963 13 O -0.391 6.391 14 C 0.075 3.925 15 H 0.089 0.911 16 C 0.198 3.802 17 N -0.620 5.620 18 C -0.247 4.247 19 H 0.082 0.918 20 C -0.063 4.063 21 N -0.950 5.950 22 Si 0.984 3.016 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.270 1.270 26 C 0.138 3.862 27 C 0.114 3.886 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.426 0.574 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.135 0.865 36 H 0.140 0.860 37 H 0.082 0.918 38 H 0.141 0.859 39 H 0.134 0.866 40 H 0.068 0.932 41 H 0.024 0.976 42 H 0.027 0.973 43 H 0.250 0.750 44 H 0.035 0.965 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.503 -16.327 -21.277 27.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.880 5.880 3 S 2.733 3.267 4 O -0.977 6.977 5 O -0.972 6.972 6 C -0.739 4.739 7 C -0.180 4.180 8 C 0.307 3.693 9 O -0.453 6.453 10 N -0.331 5.331 11 C -0.060 4.060 12 C -0.039 4.039 13 O -0.310 6.310 14 C 0.016 3.984 15 H 0.106 0.894 16 C 0.072 3.928 17 N -0.347 5.347 18 C -0.375 4.375 19 H 0.100 0.900 20 C -0.256 4.256 21 N -0.598 5.598 22 Si 0.811 3.189 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.194 1.194 26 C 0.011 3.989 27 C 0.008 3.992 28 H 0.110 0.890 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.122 0.878 32 H 0.262 0.738 33 H 0.167 0.833 34 H 0.164 0.836 35 H 0.152 0.848 36 H 0.158 0.842 37 H 0.100 0.900 38 H 0.159 0.841 39 H 0.151 0.849 40 H 0.086 0.914 41 H 0.042 0.958 42 H 0.045 0.955 43 H 0.059 0.941 44 H 0.053 0.947 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.363 -15.880 -21.369 26.835 hybrid contribution -0.063 -0.090 1.982 1.985 sum -3.426 -15.970 -19.387 25.350 Atomic orbital electron populations 1.21785 0.77523 1.06039 1.02483 1.55127 1.16791 1.24103 1.91941 1.03977 0.72706 0.73846 0.76148 1.93582 1.34715 1.81748 1.87638 1.93576 1.79153 1.73370 1.51097 1.30397 1.12500 1.07133 1.23823 1.21594 1.04562 0.95484 0.96335 1.20980 0.79228 0.80040 0.89042 1.90693 1.38129 1.62802 1.53666 1.47710 1.47876 1.19678 1.17872 1.22969 0.93855 0.94267 0.94908 1.23288 1.02749 0.93328 0.84544 1.87899 1.61093 1.57878 1.24141 1.23570 0.92787 0.91070 0.90970 0.89360 1.20858 0.93098 0.92162 0.86686 1.44374 1.55243 1.22494 1.12606 1.19417 1.23297 1.05680 0.89150 0.90028 1.25697 1.00378 0.96759 1.02745 1.70147 1.39864 1.12338 1.37496 0.85008 0.77172 0.77824 0.78868 1.21105 1.21765 1.19443 1.21654 0.95655 0.90814 0.90734 1.21881 0.98617 0.93988 0.84712 0.88958 0.91724 0.90903 0.87764 0.73798 0.83327 0.83620 0.84755 0.84175 0.90004 0.84115 0.84855 0.91387 0.95789 0.95474 0.94075 0.94717 0.95235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.40 11.03 127.77 1.41 1.81 16 2 N -1.12 -9.76 6.08 -206.53 -1.25 -11.01 16 3 S 2.64 35.32 5.46 -56.49 -0.31 35.02 16 4 O -0.99 -19.52 18.08 -127.65 -2.31 -21.82 16 5 O -0.98 -18.98 17.73 -127.65 -2.26 -21.25 16 6 C -0.61 -7.69 5.31 71.98 0.38 -7.31 16 7 C -0.14 -2.01 4.05 29.85 0.12 -1.89 16 8 C 0.52 13.09 7.67 87.66 0.67 13.77 16 9 O -0.57 -19.12 15.39 -3.04 -0.05 -19.17 16 10 N -0.60 -16.18 2.76 -793.35 -2.19 -18.37 16 11 C 0.06 1.17 6.27 86.47 0.54 1.71 16 12 C 0.04 0.80 7.02 72.17 0.51 1.31 16 13 O -0.39 -13.73 9.98 -148.98 -1.49 -15.22 16 14 C 0.08 2.89 4.00 31.62 0.13 3.02 16 15 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 16 C 0.20 10.09 5.00 87.12 0.44 10.53 16 17 N -0.62 -33.14 3.37 -694.47 -2.34 -35.49 16 18 C -0.25 -14.22 10.28 84.04 0.86 -13.36 16 19 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 20 C -0.06 -3.62 5.48 84.86 0.47 -3.15 16 21 N -0.95 -57.69 10.29 21.65 0.22 -57.47 16 22 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 23 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 26 C 0.14 6.01 6.80 86.55 0.59 6.60 16 27 C 0.11 4.21 3.19 45.94 0.15 4.35 16 28 H 0.09 3.76 7.08 -2.39 -0.02 3.74 16 29 H 0.06 0.46 8.04 -2.39 -0.02 0.44 16 30 H 0.07 0.28 7.73 -2.39 -0.02 0.26 16 31 H 0.10 0.18 8.14 -2.38 -0.02 0.16 16 32 H 0.43 2.48 8.92 -96.75 -0.86 1.61 16 33 H 0.15 1.64 7.73 -2.39 -0.02 1.63 16 34 H 0.15 1.81 8.10 -2.39 -0.02 1.79 16 35 H 0.13 1.35 7.99 -2.39 -0.02 1.33 16 36 H 0.14 1.19 7.59 -2.39 -0.02 1.17 16 37 H 0.08 1.68 7.59 -2.39 -0.02 1.66 16 38 H 0.14 1.29 5.95 -2.39 -0.01 1.27 16 39 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.02 1.39 7.31 -2.39 -0.02 1.38 16 42 H 0.03 1.53 7.41 -2.39 -0.02 1.52 16 43 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 44 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.03 1.27 7.34 -2.39 -0.02 1.25 16 Total: -1.00 -86.78 371.76 -3.53 -90.32 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 0.15 Total: 8.71 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 6.26 Total: 17.38 kcal Atomic # 7 Polarization: -116.78 SS G_CDS: -5.56 Total: -122.34 kcal Atomic # 8 Polarization: -71.36 SS G_CDS: -6.11 Total: -77.46 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Atomic # 16 Polarization: 35.32 SS G_CDS: -0.31 Total: 35.02 kcal Total: -86.78 -3.53 -90.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001217876081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.376 kcal (2) G-P(sol) polarization free energy of solvation -86.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds