Wall clock time and date at job start Wed Apr 1 2020 04:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45193 * 109.47480 * 2 1 4 4 C 1.34225 * 117.00463 * 180.02562 * 3 2 1 5 5 O 1.20831 * 119.99770 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00591 * 180.02562 * 4 3 2 7 7 C 1.52994 * 109.47481 * 179.97438 * 6 4 3 8 8 H 1.09007 * 109.46976 * 54.48493 * 7 6 4 9 9 C 1.50699 * 109.47373 * 174.48427 * 7 6 4 10 10 H 1.07997 * 120.00110 * 94.99277 * 9 7 6 11 11 C 1.37877 * 120.00083 * 275.00077 * 9 7 6 12 12 N 1.31513 * 119.99886 * 185.02256 * 11 9 7 13 13 Si 1.86799 * 120.00079 * 5.01518 * 11 9 7 14 14 H 1.48498 * 109.46919 * 84.83169 * 13 11 9 15 15 H 1.48500 * 109.47345 * 204.82865 * 13 11 9 16 16 H 1.48497 * 109.47448 * 324.83294 * 13 11 9 17 17 O 1.42902 * 109.47406 * 294.48704 * 7 6 4 18 18 C 1.35634 * 116.99987 * 149.99802 * 17 7 6 19 19 N 1.30902 * 125.99956 * 0.02562 * 18 17 7 20 20 N 1.40099 * 108.00452 * 179.97438 * 19 18 17 21 21 C 1.30906 * 108.00739 * 0.02562 * 20 19 18 22 22 O 1.35639 * 126.00271 * 180.02562 * 21 20 19 23 23 N 1.36613 * 125.99674 * 179.71657 * 18 17 7 24 24 C 1.40289 * 126.00900 * 0.03628 * 23 18 17 25 25 C 1.38805 * 120.06231 * 294.73305 * 24 23 18 26 26 C 1.38134 * 119.93424 * 179.74204 * 25 24 23 27 27 C 1.38270 * 120.06157 * 0.52856 * 26 25 24 28 28 C 1.38273 * 120.12864 * 359.71841 * 27 26 25 29 29 C 1.38123 * 120.06439 * 0.02995 * 28 27 26 30 30 H 1.09005 * 109.46827 * 300.00191 * 1 2 3 31 31 H 1.08999 * 109.46802 * 59.99927 * 1 2 3 32 32 H 1.09002 * 109.47016 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46936 * 239.99477 * 2 1 3 34 34 H 1.09004 * 109.47182 * 120.00322 * 2 1 3 35 35 H 1.08998 * 109.47190 * 59.99611 * 6 4 3 36 36 H 1.09000 * 109.46885 * 300.00136 * 6 4 3 37 37 H 0.97004 * 119.99690 * 179.97438 * 12 11 9 38 38 H 0.96694 * 114.00243 * 89.97533 * 22 21 20 39 39 H 1.07994 * 120.03165 * 359.97438 * 25 24 23 40 40 H 1.07999 * 119.96733 * 180.24968 * 26 25 24 41 41 H 1.08004 * 119.93529 * 179.69980 * 27 26 25 42 42 H 1.07996 * 119.96773 * 180.02562 * 28 27 26 43 43 H 1.07997 * 120.03660 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9209 2.9373 0.0000 7 6 5.4487 2.8572 -0.0001 8 1 5.7802 2.2423 -0.8369 9 6 6.0245 4.2432 -0.1361 10 1 6.3107 4.7979 0.7452 11 6 6.1856 4.8032 -1.3857 12 7 6.7782 5.9705 -1.5117 13 14 5.5624 3.9039 -2.8997 14 1 4.1234 4.2107 -3.1003 15 1 6.3332 4.3451 -4.0899 16 1 5.7352 2.4409 -2.7126 17 8 5.8953 2.2741 1.2257 18 6 7.0519 1.5666 1.1856 19 7 7.7968 1.3693 0.1275 20 7 8.8970 0.5914 0.5115 21 6 8.7872 0.3390 1.7913 22 8 9.6566 -0.3862 2.5383 23 7 7.6468 0.9399 2.2438 24 6 7.1686 0.9144 3.5624 25 6 7.0991 2.0884 4.2996 26 6 6.6228 2.0611 5.5960 27 6 6.2258 0.8641 6.1629 28 6 6.2987 -0.3078 5.4326 29 6 6.7693 -0.2857 4.1342 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 3.5854 3.4690 0.8904 36 1 3.5845 3.4700 -0.8895 37 1 6.8918 6.3643 -2.3909 38 1 10.3636 0.1381 2.9386 39 1 7.4135 3.0228 3.8589 40 1 6.5647 2.9748 6.1687 41 1 5.8582 0.8443 7.1783 42 1 5.9876 -1.2412 5.8778 43 1 6.8265 -1.2013 3.5643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228132812.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:53 Heat of formation + Delta-G solvation = -33.313581 kcal Electronic energy + Delta-G solvation = -31159.730514 eV Core-core repulsion = 26787.772960 eV Total energy + Delta-G solvation = -4371.957554 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.89775 -40.12605 -39.04809 -38.14871 -37.08494 -36.16001 -34.06885 -33.24883 -31.88216 -31.14816 -31.02739 -29.33621 -28.87092 -26.61704 -23.52708 -23.21063 -23.07487 -22.45165 -21.50709 -20.93152 -19.93394 -18.87870 -17.90340 -17.63884 -17.02996 -16.82035 -16.37781 -16.30383 -16.08390 -15.73079 -14.96975 -14.65172 -14.48574 -14.22137 -14.14489 -13.59500 -13.52438 -13.13153 -12.98521 -12.82645 -12.59113 -12.48042 -12.29996 -12.28538 -11.87668 -11.72195 -11.55764 -11.42262 -11.38083 -10.83421 -10.74463 -10.50767 -10.37098 -10.23593 -9.98859 -9.90930 -9.84700 -9.37052 -9.11933 -8.84138 -8.79538 -8.21220 -6.34230 -4.41683 0.98341 1.21954 1.93761 2.23041 2.65354 2.97861 3.04394 3.14249 3.27202 3.34299 3.52723 3.68235 4.05829 4.21856 4.76345 4.78348 4.91794 4.92434 4.94942 4.97490 5.11898 5.23299 5.23386 5.27926 5.36357 5.51907 5.65186 5.73483 5.80547 5.83420 5.84887 5.89618 5.92244 6.03712 6.16464 6.27166 6.31498 6.38896 6.51093 6.67084 6.78327 6.83315 7.21646 7.48719 7.91410 8.15241 8.23259 8.54552 8.72479 9.23950 10.76789 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.007797 B = 0.005006 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3590.210072 B = 5592.168172 C = 7513.836849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 O -0.364 6.364 4 C 0.453 3.547 5 O -0.504 6.504 6 C -0.110 4.110 7 C 0.204 3.796 8 H 0.070 0.930 9 C -0.542 4.542 10 H 0.087 0.913 11 C 0.095 3.905 12 N -0.873 5.873 13 Si 0.852 3.148 14 H -0.268 1.268 15 H -0.276 1.276 16 H -0.250 1.250 17 O -0.288 6.288 18 C 0.467 3.533 19 N -0.329 5.329 20 N -0.288 5.288 21 C 0.380 3.620 22 O -0.436 6.436 23 N -0.469 5.469 24 C 0.120 3.880 25 C -0.096 4.096 26 C -0.108 4.108 27 C -0.112 4.112 28 C -0.112 4.112 29 C -0.099 4.099 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.272 0.728 38 H 0.403 0.597 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.852 -10.110 13.206 17.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.282 6.282 4 C 0.296 3.704 5 O -0.390 6.390 6 C -0.148 4.148 7 C 0.149 3.851 8 H 0.088 0.912 9 C -0.579 4.579 10 H 0.105 0.895 11 C -0.112 4.112 12 N -0.508 5.508 13 Si 0.678 3.322 14 H -0.194 1.194 15 H -0.201 1.201 16 H -0.175 1.175 17 O -0.189 6.189 18 C 0.160 3.840 19 N -0.179 5.179 20 N -0.129 5.129 21 C 0.070 3.930 22 O -0.234 6.234 23 N -0.186 5.186 24 C 0.029 3.971 25 C -0.116 4.116 26 C -0.127 4.127 27 C -0.131 4.131 28 C -0.131 4.131 29 C -0.118 4.118 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.082 0.918 38 H 0.259 0.741 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.526 -10.656 11.553 16.660 hybrid contribution -0.450 -0.127 0.567 0.735 sum -5.976 -10.783 12.120 17.288 Atomic orbital electron populations 1.21787 0.92978 1.02557 1.03425 1.22929 0.95069 0.81274 1.02301 1.86556 1.25541 1.31549 1.84549 1.24611 0.79955 0.93913 0.71924 1.90653 1.60219 1.43261 1.44911 1.22278 0.96746 0.89303 1.06462 1.20577 0.87865 0.95146 0.81536 0.91182 1.21035 1.43783 0.97747 0.95321 0.89539 1.24812 0.93256 0.94668 0.98426 1.69850 1.39418 1.16791 1.24753 0.87227 0.79471 0.82141 0.83377 1.19369 1.20135 1.17462 1.85892 1.30686 1.62446 1.39841 1.21435 0.89290 0.90004 0.83234 1.78626 1.02480 1.19271 1.17555 1.78079 1.15689 1.13604 1.05540 1.21251 0.85845 0.96691 0.89176 1.84920 1.39622 1.32333 1.66566 1.43685 1.21807 1.45773 1.07345 1.17686 1.01589 0.94883 0.82979 1.21294 0.98616 0.97543 0.94130 1.21065 0.98659 0.98483 0.94500 1.21265 0.99197 0.92521 1.00080 1.21017 0.99753 0.98734 0.93599 1.21181 0.97635 0.97064 0.95950 0.91568 0.91539 0.90624 0.91564 0.91618 0.86862 0.86417 0.91821 0.74075 0.84894 0.85030 0.85490 0.85283 0.85465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.29 37.16 0.38 -1.08 16 2 C 0.06 0.79 6.19 37.16 0.23 1.02 16 3 O -0.36 -6.12 10.22 -39.25 -0.40 -6.52 16 4 C 0.45 8.95 7.84 36.01 0.28 9.23 16 5 O -0.50 -11.29 15.18 -23.93 -0.36 -11.66 16 6 C -0.11 -2.23 5.26 -27.89 -0.15 -2.37 16 7 C 0.20 4.90 1.11 -27.89 -0.03 4.87 16 8 H 0.07 1.85 4.67 -51.93 -0.24 1.61 16 9 C -0.54 -14.56 9.21 -34.44 -0.32 -14.88 16 10 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 11 C 0.10 2.61 5.47 -17.82 -0.10 2.51 16 12 N -0.87 -25.24 13.96 55.43 0.77 -24.46 16 13 Si 0.85 20.53 25.90 -169.99 -4.40 16.13 16 14 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.25 -6.19 6.14 56.52 0.35 -5.84 16 17 O -0.29 -6.73 9.01 -32.52 -0.29 -7.03 16 18 C 0.47 10.80 8.44 -88.59 -0.75 10.05 16 19 N -0.33 -8.27 11.62 29.70 0.35 -7.92 16 20 N -0.29 -6.43 12.72 29.71 0.38 -6.05 16 21 C 0.38 7.04 9.07 -88.58 -0.80 6.24 16 22 O -0.44 -5.98 13.56 -18.62 -0.25 -6.23 16 23 N -0.47 -9.01 2.81 -63.58 -0.18 -9.19 16 24 C 0.12 1.91 5.63 -83.57 -0.47 1.44 16 25 C -0.10 -1.37 9.91 -39.41 -0.39 -1.76 16 26 C -0.11 -1.20 10.04 -39.61 -0.40 -1.59 16 27 C -0.11 -1.09 10.04 -39.56 -0.40 -1.49 16 28 C -0.11 -1.19 10.04 -39.61 -0.40 -1.59 16 29 C -0.10 -1.34 9.90 -39.41 -0.39 -1.73 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 34 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 35 H 0.11 2.06 8.14 -51.93 -0.42 1.63 16 36 H 0.12 2.30 6.41 -51.93 -0.33 1.96 16 37 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.40 3.35 9.06 45.56 0.41 3.76 16 39 H 0.13 2.01 8.06 -52.49 -0.42 1.58 16 40 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 42 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 379.40 15.07 5.72 5.72 Total: -1.00 -35.00 379.40 -6.79 -41.79 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -4.43 Total: 6.55 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: -3.69 Total: 8.87 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 1.32 Total: -47.62 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -1.31 Total: -31.43 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.40 Total: 16.13 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.00 -6.79 -41.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228132812.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.481 kcal (2) G-P(sol) polarization free energy of solvation -35.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds