Wall clock time and date at job start Wed Apr 1 2020 06:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42095 * 108.57898 * 2 1 4 4 O 1.42104 * 108.57820 * 228.97196 * 2 1 3 5 5 C 1.81403 * 101.91755 * 114.48773 * 2 1 3 6 6 C 1.53002 * 109.47162 * 179.97438 * 5 2 1 7 7 C 1.50695 * 109.47201 * 179.97438 * 6 5 2 8 8 O 1.21277 * 119.99960 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00087 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00273 * 180.02562 * 9 7 6 11 11 H 1.09002 * 112.84975 * 336.19289 * 10 9 7 12 12 C 1.53951 * 113.53702 * 107.50082 * 10 9 7 13 13 C 1.53784 * 87.01873 * 89.19082 * 12 10 9 14 14 H 1.08999 * 113.61541 * 270.76901 * 13 12 10 15 15 N 1.46903 * 113.61465 * 139.95155 * 13 12 10 16 16 C 1.46896 * 110.99955 * 105.86435 * 15 13 12 17 17 C 1.50701 * 109.46946 * 180.02562 * 16 15 13 18 18 O 1.21293 * 120.00278 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00078 * 180.02562 * 17 16 15 20 20 C 1.37095 * 119.99959 * 179.97438 * 19 17 16 21 21 H 1.07991 * 120.00408 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99816 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99922 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00126 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47228 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.46793 * 299.99915 * 24 22 20 27 27 H 1.48500 * 109.47000 * 60.00007 * 24 22 20 28 28 C 1.53772 * 113.61478 * 204.99912 * 10 9 7 29 29 H 1.08997 * 109.46966 * 305.51953 * 1 2 3 30 30 H 1.09004 * 109.46974 * 65.51066 * 1 2 3 31 31 H 1.08992 * 109.47551 * 185.50952 * 1 2 3 32 32 H 1.09001 * 109.47123 * 59.99688 * 5 2 1 33 33 H 1.08999 * 109.47129 * 299.99809 * 5 2 1 34 34 H 1.09004 * 109.46661 * 59.99418 * 6 5 2 35 35 H 1.08999 * 109.47065 * 299.99999 * 6 5 2 36 36 H 0.97002 * 119.99970 * 359.97438 * 9 7 6 37 37 H 1.08997 * 113.67357 * 334.66228 * 12 10 9 38 38 H 1.09001 * 113.61193 * 203.70910 * 12 10 9 39 39 H 1.00902 * 110.99560 * 341.90873 * 15 13 12 40 40 H 1.08994 * 109.47346 * 60.00149 * 16 15 13 41 41 H 1.09006 * 109.47133 * 299.99542 * 16 15 13 42 42 H 0.97000 * 119.99555 * 359.97438 * 19 17 16 43 43 H 0.96996 * 120.00340 * 359.97438 * 23 22 20 44 44 H 1.09001 * 113.61682 * 156.33195 * 28 10 9 45 45 H 1.08999 * 113.69480 * 25.44346 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0162 5 6 2.1886 -0.7357 1.6153 6 6 3.7054 -0.8197 1.7981 7 6 4.0166 -1.4303 3.1402 8 8 3.1141 -1.7648 3.8780 9 7 5.2977 -1.6036 3.5209 10 6 5.6003 -2.1976 4.8254 11 1 4.7885 -2.0790 5.5431 12 6 6.1427 -3.6356 4.7351 13 6 7.5459 -3.0144 4.6344 14 1 7.8541 -2.7954 3.6121 15 7 8.5689 -3.7451 5.3943 16 6 9.4486 -4.5055 4.4966 17 6 10.4823 -5.2407 5.3104 18 8 10.4861 -5.1407 6.5192 19 7 11.4032 -6.0085 4.6949 20 6 12.3438 -6.6769 5.4351 21 1 12.3472 -6.5879 6.5113 22 6 13.2929 -7.4689 4.8005 23 7 13.2885 -7.5776 3.4909 24 14 14.5751 -8.3791 5.8090 25 1 15.4639 -9.1484 4.9017 26 1 15.3825 -7.4013 6.5818 27 1 13.8977 -9.3117 6.7454 28 6 6.9769 -1.7962 5.3807 29 1 -0.3633 0.5970 0.8364 30 1 -0.3633 0.4260 -0.9353 31 1 -0.3634 -1.0228 0.0987 32 1 1.7608 -1.7370 1.6665 33 1 1.7609 -0.1171 2.4043 34 1 4.1334 0.1815 1.7466 35 1 4.1327 -1.4385 1.0091 36 1 6.0195 -1.3356 2.9309 37 1 5.8335 -4.1642 3.8335 38 1 5.9875 -4.2186 5.6430 39 1 8.1453 -4.3492 6.0826 40 1 9.9461 -3.8209 3.8097 41 1 8.8560 -5.2230 3.9290 42 1 11.4004 -6.0881 3.7281 43 1 12.6226 -7.1053 2.9672 44 1 7.0502 -1.8752 6.4654 45 1 7.3413 -0.8419 5.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265484889.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:19:45 Heat of formation + Delta-G solvation = -154.449578 kcal Electronic energy + Delta-G solvation = -27085.742206 eV Core-core repulsion = 22843.975752 eV Total energy + Delta-G solvation = -4241.766454 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.39447 -40.34913 -39.50621 -38.00046 -37.05933 -36.50400 -35.50989 -34.30337 -33.38870 -32.99072 -30.37620 -28.43044 -26.68952 -26.59251 -25.74539 -23.86614 -21.84625 -21.49610 -20.53303 -19.97709 -19.81440 -18.65627 -18.15968 -17.35880 -17.27011 -17.00779 -16.96510 -16.72418 -16.56238 -16.45035 -15.85844 -15.81350 -15.45872 -14.95624 -14.81755 -14.51393 -14.26956 -13.99730 -13.90846 -13.65277 -13.50309 -13.46520 -13.33510 -13.15431 -13.12268 -13.03233 -12.76276 -12.64878 -12.46043 -12.04595 -11.91751 -11.89539 -11.80874 -11.61754 -11.52783 -11.40727 -10.99133 -10.40508 -10.13626 -10.11289 -9.30599 -8.92969 -6.07108 -0.94534 1.51553 1.52621 1.54931 1.82991 1.85265 2.00474 2.04745 2.40724 2.75358 2.82531 3.12987 3.16459 3.33943 3.41165 3.54879 3.64995 3.81305 3.85104 3.93407 4.02034 4.12869 4.13370 4.25273 4.38626 4.39664 4.47530 4.55377 4.56798 4.76534 4.81960 4.86797 4.92768 4.99840 5.00965 5.09113 5.49591 5.60781 5.95003 6.05398 6.32785 6.47065 6.57866 6.74233 7.15886 7.43990 7.92273 8.54810 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.022761 B = 0.001476 C = 0.001415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.863578 B =18959.694991 C =19787.574756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.641 4.641 2 S 2.435 3.565 3 O -0.980 6.980 4 O -0.982 6.982 5 C -0.594 4.594 6 C -0.143 4.143 7 C 0.521 3.479 8 O -0.575 6.575 9 N -0.702 5.702 10 C 0.127 3.873 11 H 0.093 0.907 12 C -0.177 4.177 13 C 0.066 3.934 14 H 0.113 0.887 15 N -0.671 5.671 16 C 0.066 3.934 17 C 0.439 3.561 18 O -0.619 6.619 19 N -0.586 5.586 20 C -0.412 4.412 21 H 0.073 0.927 22 C -0.041 4.041 23 N -0.916 5.916 24 Si 1.133 2.867 25 H -0.273 1.273 26 H -0.273 1.273 27 H -0.273 1.273 28 C -0.124 4.124 29 H 0.152 0.848 30 H 0.138 0.862 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.417 0.583 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.346 0.654 40 H 0.108 0.892 41 H 0.066 0.934 42 H 0.385 0.615 43 H 0.259 0.741 44 H 0.093 0.907 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.146 16.655 -8.966 33.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.793 4.793 2 S 2.622 3.378 3 O -0.978 6.978 4 O -0.979 6.979 5 C -0.723 4.723 6 C -0.183 4.183 7 C 0.308 3.692 8 O -0.455 6.455 9 N -0.354 5.354 10 C 0.020 3.980 11 H 0.111 0.889 12 C -0.218 4.218 13 C -0.044 4.044 14 H 0.131 0.869 15 N -0.302 5.302 16 C -0.067 4.067 17 C 0.227 3.773 18 O -0.505 6.505 19 N -0.226 5.226 20 C -0.542 4.542 21 H 0.091 0.909 22 C -0.240 4.240 23 N -0.555 5.555 24 Si 0.953 3.047 25 H -0.197 1.197 26 H -0.198 1.198 27 H -0.198 1.198 28 C -0.163 4.163 29 H 0.170 0.830 30 H 0.156 0.844 31 H 0.169 0.831 32 H 0.167 0.833 33 H 0.170 0.830 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.255 0.745 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.165 0.835 40 H 0.126 0.874 41 H 0.084 0.916 42 H 0.219 0.781 43 H 0.070 0.930 44 H 0.111 0.889 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -25.420 16.300 -8.375 31.337 hybrid contribution -1.982 -0.081 -0.156 1.990 sum -27.402 16.220 -8.530 32.965 Atomic orbital electron populations 1.30107 1.21995 1.13826 1.13419 1.07154 0.79865 0.74107 0.76693 1.93559 1.80988 1.36266 1.86940 1.93565 1.81013 1.67664 1.55691 1.30134 1.03126 1.16034 1.23010 1.21524 0.94991 1.05679 0.96152 1.20771 0.82382 0.77462 0.88572 1.90694 1.46617 1.52210 1.55940 1.45643 1.07924 1.62756 1.19094 1.21625 0.97611 0.93206 0.85550 0.88928 1.24181 0.97465 0.97245 1.02901 1.23293 0.87974 0.95211 0.97930 0.86881 1.60044 1.22115 1.32465 1.15586 1.21587 0.93790 0.96875 0.94431 1.20966 0.84801 0.82725 0.88786 1.90499 1.76131 1.67381 1.16486 1.41998 1.28386 1.43242 1.08929 1.20530 1.11359 1.28612 0.93656 0.90926 1.27814 1.01164 0.97303 0.97681 1.70972 1.36377 1.42589 1.05607 0.82632 0.73160 0.75479 0.73415 1.19719 1.19847 1.19850 1.23377 0.92696 0.98586 1.01619 0.83003 0.84357 0.83141 0.83266 0.83013 0.85213 0.85527 0.74524 0.91115 0.89403 0.83453 0.87447 0.91596 0.78097 0.92962 0.88867 0.89256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 0.00 10.62 113.37 1.20 1.20 16 2 S 2.44 17.87 5.36 -56.49 -0.30 17.57 16 3 O -0.98 -15.00 18.10 -127.37 -2.30 -17.30 16 4 O -0.98 -15.59 18.10 -127.37 -2.31 -17.89 16 5 C -0.59 -3.59 5.09 71.98 0.37 -3.22 16 6 C -0.14 -1.23 5.71 29.85 0.17 -1.06 16 7 C 0.52 7.94 7.83 87.66 0.69 8.63 16 8 O -0.58 -13.18 15.58 -3.02 -0.05 -13.23 16 9 N -0.70 -8.97 5.26 -439.79 -2.31 -11.29 16 10 C 0.13 2.09 4.33 45.57 0.20 2.28 16 11 H 0.09 1.82 7.46 -2.39 -0.02 1.80 16 12 C -0.18 -3.26 7.51 31.18 0.23 -3.02 16 13 C 0.07 1.28 4.04 45.44 0.18 1.46 16 14 H 0.11 1.80 7.88 -2.39 -0.02 1.78 16 15 N -0.67 -19.46 6.24 -492.85 -3.07 -22.53 16 16 C 0.07 2.10 6.02 85.56 0.52 2.61 16 17 C 0.44 20.55 7.82 87.66 0.69 21.23 16 18 O -0.62 -34.28 15.78 -3.07 -0.05 -34.32 16 19 N -0.59 -29.55 5.28 -306.99 -1.62 -31.17 16 20 C -0.41 -23.56 9.68 84.04 0.81 -22.75 16 21 H 0.07 4.46 7.16 -2.91 -0.02 4.44 16 22 C -0.04 -2.24 5.50 84.93 0.47 -1.77 16 23 N -0.92 -50.90 13.68 21.66 0.30 -50.60 16 24 Si 1.13 48.39 29.92 68.60 2.05 50.45 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 28 C -0.12 -2.08 7.63 31.12 0.24 -1.84 16 29 H 0.15 -0.57 8.14 -2.39 -0.02 -0.59 16 30 H 0.14 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.15 -0.51 8.14 -2.39 -0.02 -0.53 16 32 H 0.15 0.66 8.10 -2.39 -0.02 0.64 16 33 H 0.15 0.58 8.10 -2.39 -0.02 0.56 16 34 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.42 3.04 8.70 -92.71 -0.81 2.23 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.09 1.74 7.83 -2.39 -0.02 1.72 16 39 H 0.35 10.85 7.91 -89.69 -0.71 10.14 16 40 H 0.11 3.01 8.13 -2.39 -0.02 2.99 16 41 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 42 H 0.38 17.69 6.73 -92.71 -0.62 17.06 16 43 H 0.26 13.89 6.78 -92.71 -0.63 13.26 16 44 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -90.20 394.45 -4.86 -95.07 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: -0.96 Total: 31.50 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 5.76 Total: 3.75 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -6.71 Total: -115.59 kcal Atomic # 8 Polarization: -78.04 SS G_CDS: -4.71 Total: -82.75 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.05 Total: 50.45 kcal Atomic # 16 Polarization: 17.87 SS G_CDS: -0.30 Total: 17.57 kcal Total: -90.20 -4.86 -95.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265484889.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.382 kcal (2) G-P(sol) polarization free energy of solvation -90.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds