Wall clock time and date at job start Wed Apr 1 2020 04:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81396 * 109.47075 * 2 1 4 4 O 1.42103 * 108.57826 * 65.51725 * 3 2 1 5 5 O 1.42099 * 108.58047 * 294.48640 * 3 2 1 6 6 C 1.81399 * 101.92168 * 179.97438 * 3 2 1 7 7 C 1.50696 * 109.47330 * 180.02562 * 6 3 2 8 8 O 1.21284 * 120.00109 * 0.02562 * 7 6 3 9 9 N 1.34777 * 120.00137 * 179.97438 * 7 6 3 10 10 C 1.46506 * 119.99873 * 179.97438 * 9 7 6 11 11 H 1.09002 * 112.85053 * 23.81070 * 10 9 7 12 12 C 1.53781 * 113.61132 * 155.00131 * 10 9 7 13 13 C 1.53778 * 87.07854 * 139.98151 * 12 10 9 14 14 H 1.09007 * 113.61440 * 89.12048 * 13 12 10 15 15 N 1.46904 * 113.61507 * 219.93355 * 13 12 10 16 16 C 1.46900 * 110.99882 * 205.00070 * 15 13 12 17 17 C 1.50703 * 109.46807 * 179.97438 * 16 15 13 18 18 O 1.21289 * 120.00437 * 0.02562 * 17 16 15 19 19 N 1.34782 * 119.99774 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99874 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99750 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99729 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99386 * 179.97438 * 22 20 19 24 24 Si 1.86794 * 120.00176 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47473 * 90.00079 * 24 22 20 26 26 H 1.48508 * 109.46752 * 209.99861 * 24 22 20 27 27 H 1.48503 * 109.46911 * 329.99377 * 24 22 20 28 28 C 1.53777 * 87.08544 * 334.56772 * 13 12 10 29 29 H 1.09002 * 109.46853 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47252 * 299.99754 * 1 2 3 31 31 H 1.08999 * 109.47073 * 59.99688 * 1 2 3 32 32 H 1.09006 * 109.46788 * 240.00104 * 2 1 3 33 33 H 1.08999 * 109.47073 * 120.00312 * 2 1 3 34 34 H 1.09004 * 109.46978 * 60.00165 * 6 3 2 35 35 H 1.09000 * 109.47234 * 300.00127 * 6 3 2 36 36 H 0.96995 * 120.00018 * 0.27749 * 9 7 6 37 37 H 1.08997 * 113.61529 * 254.52896 * 12 10 9 38 38 H 1.09002 * 113.61788 * 25.43621 * 12 10 9 39 39 H 1.00899 * 110.99812 * 328.95717 * 15 13 12 40 40 H 1.08996 * 109.47714 * 299.99745 * 16 15 13 41 41 H 1.08996 * 109.47169 * 60.00476 * 16 15 13 42 42 H 0.96995 * 120.00209 * 0.02562 * 19 17 16 43 43 H 0.97000 * 119.99554 * 180.02562 * 23 22 20 44 44 H 1.09000 * 113.61314 * 270.88866 * 28 13 12 45 45 H 1.09002 * 113.61704 * 139.97929 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7593 2.3231 1.2259 5 8 1.7593 2.3232 -1.2258 6 6 3.9329 1.4719 0.0008 7 6 4.6176 2.8144 0.0015 8 8 3.9575 3.8318 0.0020 9 7 5.9636 2.8844 0.0027 10 6 6.6291 4.1895 0.0028 11 1 6.0024 4.9843 0.4075 12 6 8.0461 4.1583 0.5996 13 6 8.4559 5.1239 -0.5248 14 1 8.3291 6.1751 -0.2655 15 7 9.7769 4.8332 -1.0979 16 6 10.3696 6.0386 -1.6926 17 6 11.7211 5.7021 -2.2682 18 8 12.1484 4.5696 -2.1911 19 7 12.4547 6.6596 -2.8697 20 6 13.6840 6.3534 -3.3939 21 1 14.0643 5.3449 -3.3251 22 6 14.4405 7.3406 -4.0134 23 7 15.6190 7.0472 -4.5154 24 14 13.7829 9.0850 -4.1316 25 1 14.2092 9.8567 -2.9367 26 1 14.3172 9.7335 -5.3561 27 1 12.2997 9.0515 -4.1962 28 6 7.2877 4.5454 -1.3405 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 4.2260 0.9147 -0.8890 35 1 4.2253 0.9149 0.8910 36 1 6.4915 2.0707 -0.0010 37 1 8.1100 4.5959 1.5958 38 1 8.5264 3.1821 0.5334 39 1 10.3912 4.4322 -0.4051 40 1 9.7195 6.4105 -2.4844 41 1 10.4824 6.8045 -0.9253 42 1 12.1130 7.5652 -2.9317 43 1 16.1473 7.7364 -4.9476 44 1 7.5606 3.6749 -1.9371 45 1 6.7393 5.2954 -1.9105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265573016.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:58 Heat of formation + Delta-G solvation = -110.280833 kcal Electronic energy + Delta-G solvation = -27255.363770 eV Core-core repulsion = 23015.512616 eV Total energy + Delta-G solvation = -4239.851154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 3.02 seconds Orbital eigenvalues (eV) -40.57963 -39.01698 -38.18630 -37.38257 -36.40059 -34.86135 -33.98572 -33.73459 -32.91861 -31.66768 -30.78081 -27.09338 -25.93039 -24.83364 -24.24380 -22.93688 -21.16147 -20.09723 -19.37930 -19.24978 -18.34773 -17.96819 -17.40371 -16.91328 -16.79226 -16.22788 -15.87355 -15.68379 -15.41532 -15.33691 -14.83904 -14.75949 -14.43239 -13.96172 -13.76281 -13.65929 -13.33760 -13.16515 -13.09404 -12.72748 -12.64133 -12.43308 -12.37638 -12.27489 -12.19148 -12.14936 -11.93143 -11.62074 -11.41393 -11.16715 -11.13761 -10.98781 -10.77596 -10.60555 -10.54239 -9.99264 -9.59242 -9.45239 -8.61253 -8.24320 -8.18225 -6.33044 -3.84570 -0.64440 1.96921 2.22212 2.49299 3.02144 3.05790 3.14386 3.29277 3.46573 3.71775 3.93182 3.98894 4.01703 4.08441 4.15068 4.27012 4.31468 4.38960 4.51383 4.59765 4.67441 4.73152 4.94324 5.00735 5.04400 5.19565 5.27984 5.36865 5.44946 5.53569 5.60937 5.68708 5.78763 5.84854 5.88682 5.96355 6.21793 6.90455 7.09398 7.51244 7.56403 7.58542 8.12309 8.57650 8.92818 9.40477 9.80308 10.80030 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.032946 B = 0.001497 C = 0.001489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.671316 B =18701.425200 C =18798.466097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.620 4.620 3 S 2.450 3.550 4 O -0.919 6.919 5 O -0.917 6.917 6 C -0.664 4.664 7 C 0.542 3.458 8 O -0.529 6.529 9 N -0.703 5.703 10 C 0.117 3.883 11 H 0.119 0.881 12 C -0.148 4.148 13 C 0.062 3.938 14 H 0.077 0.923 15 N -0.654 5.654 16 C 0.046 3.954 17 C 0.449 3.551 18 O -0.567 6.567 19 N -0.590 5.590 20 C -0.306 4.306 21 H 0.119 0.881 22 C 0.042 3.958 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 C -0.138 4.138 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.406 0.594 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.352 0.648 40 H 0.088 0.912 41 H 0.046 0.954 42 H 0.371 0.629 43 H 0.273 0.727 44 H 0.096 0.904 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.924 -13.278 12.343 33.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.749 4.749 3 S 2.626 3.374 4 O -0.916 6.916 5 O -0.915 6.915 6 C -0.791 4.791 7 C 0.326 3.674 8 O -0.406 6.406 9 N -0.353 5.353 10 C 0.012 3.988 11 H 0.137 0.863 12 C -0.186 4.186 13 C -0.049 4.049 14 H 0.095 0.905 15 N -0.287 5.287 16 C -0.086 4.086 17 C 0.235 3.765 18 O -0.449 6.449 19 N -0.229 5.229 20 C -0.435 4.435 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.194 1.194 28 C -0.178 4.178 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.179 0.821 35 H 0.178 0.822 36 H 0.241 0.759 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.173 0.827 40 H 0.106 0.894 41 H 0.064 0.936 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.115 0.885 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -28.569 -12.692 11.692 33.377 hybrid contribution 0.893 0.596 0.486 1.178 sum -27.676 -12.097 12.178 32.567 Atomic orbital electron populations 1.21528 0.90018 1.05042 1.04064 1.30333 1.07943 1.24984 1.11653 1.07564 0.76377 0.77546 0.75891 1.93591 1.79715 1.72547 1.45797 1.93600 1.79645 1.72485 1.45723 1.30915 1.29020 1.05651 1.13530 1.19138 0.83489 0.88385 0.76426 1.90879 1.64229 1.35939 1.49537 1.45827 1.05548 1.09988 1.73966 1.22560 0.92272 0.85488 0.98489 0.86291 1.23634 0.94848 1.01390 0.98757 1.22798 0.90315 0.97551 0.94244 0.90494 1.60185 1.03210 1.27615 1.37650 1.21783 0.95747 0.91824 0.99286 1.19713 0.86498 0.86094 0.84178 1.90557 1.72258 1.20683 1.61362 1.42216 1.18165 1.09806 1.52747 1.19432 0.91339 0.99627 1.33093 0.86298 1.25039 0.95664 0.98417 0.96993 1.69624 1.10766 1.34219 1.37473 0.86667 0.79025 0.84780 0.78897 1.19651 1.20138 1.19443 1.23602 0.95619 1.02156 0.96381 0.89859 0.90629 0.90591 0.84810 0.84875 0.82093 0.82199 0.75858 0.90508 0.88515 0.82710 0.89406 0.93608 0.79657 0.91597 0.88546 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 9.92 37.16 0.37 -0.18 16 2 C -0.62 -1.56 6.53 37.16 0.24 -1.32 16 3 S 2.45 17.63 3.96 -107.50 -0.43 17.20 16 4 O -0.92 -10.29 17.94 -59.55 -1.07 -11.36 16 5 O -0.92 -10.59 17.95 -59.50 -1.07 -11.65 16 6 C -0.66 -2.88 6.29 36.00 0.23 -2.65 16 7 C 0.54 5.13 7.85 -10.99 -0.09 5.04 16 8 O -0.53 -7.48 15.22 2.55 0.04 -7.44 16 9 N -0.70 -5.35 5.35 -53.01 -0.28 -5.63 16 10 C 0.12 1.05 4.24 -67.11 -0.28 0.77 16 11 H 0.12 1.20 7.46 -51.93 -0.39 0.81 16 12 C -0.15 -1.21 7.40 -25.92 -0.19 -1.40 16 13 C 0.06 0.66 4.14 -66.90 -0.28 0.38 16 14 H 0.08 0.76 7.87 -51.93 -0.41 0.36 16 15 N -0.65 -9.35 6.19 -107.13 -0.66 -10.01 16 16 C 0.05 0.74 6.01 -4.97 -0.03 0.71 16 17 C 0.45 10.02 7.82 -10.98 -0.09 9.93 16 18 O -0.57 -14.93 15.78 5.55 0.09 -14.84 16 19 N -0.59 -13.93 5.09 -10.96 -0.06 -13.99 16 20 C -0.31 -8.62 10.16 -14.93 -0.15 -8.77 16 21 H 0.12 3.82 7.39 -52.49 -0.39 3.44 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 23 N -0.88 -25.62 13.96 55.50 0.77 -24.85 16 24 Si 0.88 19.29 27.74 -169.99 -4.71 14.58 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 28 C -0.14 -1.44 7.68 -25.92 -0.20 -1.64 16 29 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.13 0.02 8.14 -51.92 -0.42 -0.40 16 33 H 0.13 0.00 8.14 -51.92 -0.42 -0.43 16 34 H 0.16 0.13 8.14 -51.92 -0.42 -0.29 16 35 H 0.16 0.06 8.14 -51.92 -0.42 -0.36 16 36 H 0.41 1.86 8.73 -40.82 -0.36 1.50 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.75 8.12 -51.93 -0.42 0.33 16 39 H 0.35 5.14 8.25 -39.29 -0.32 4.82 16 40 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.05 0.63 8.13 -51.93 -0.42 0.21 16 42 H 0.37 7.69 5.76 -40.82 -0.24 7.45 16 43 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 393.02 15.07 5.92 5.92 Total: -1.00 -41.53 393.02 -8.78 -50.31 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -6.76 Total: 9.84 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -0.56 Total: 1.92 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.23 Total: -54.48 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -2.01 Total: -45.29 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.71 Total: 14.58 kcal Atomic # 16 Polarization: 17.63 SS G_CDS: -0.43 Total: 17.20 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -41.53 -8.78 -50.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265573016.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.968 kcal (2) G-P(sol) polarization free energy of solvation -41.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.02 seconds