Wall clock time and date at job start Wed Apr 1 2020 05:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46905 * 111.00027 * 2 1 4 4 C 1.46902 * 111.00266 * 123.95078 * 2 1 3 5 5 C 1.52995 * 109.47012 * 169.99952 * 4 2 1 6 6 N 1.46505 * 109.46985 * 182.60745 * 5 4 2 7 7 C 1.34268 * 119.37681 * 275.92974 * 6 5 4 8 8 O 1.21287 * 118.97617 * 2.24849 * 7 6 5 9 9 C 1.50279 * 122.05435 * 181.95944 * 7 6 5 10 10 O 1.42812 * 110.50072 * 341.60887 * 9 7 6 11 11 C 1.43390 * 113.34488 * 51.29586 * 10 9 7 12 12 C 1.45914 * 119.38241 * 95.91122 * 6 5 4 13 13 C 1.53504 * 113.75683 * 295.69590 * 12 6 5 14 14 N 1.47664 * 85.98266 * 91.24537 * 13 12 6 15 15 S 1.65596 * 134.46000 * 204.34948 * 14 13 12 16 16 O 1.42100 * 106.40204 * 23.49813 * 15 14 13 17 17 O 1.42111 * 106.40258 * 156.41277 * 15 14 13 18 18 C 1.76195 * 107.22173 * 269.95106 * 15 14 13 19 19 H 1.07998 * 119.99932 * 0.02562 * 18 15 14 20 20 C 1.37875 * 120.00097 * 179.97438 * 18 15 14 21 21 N 1.31511 * 120.00294 * 0.02562 * 20 18 15 22 22 Si 1.86804 * 120.00106 * 180.02562 * 20 18 15 23 23 H 1.48506 * 109.46975 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47214 * 120.00251 * 22 20 18 25 25 H 1.48498 * 109.47212 * 240.00799 * 22 20 18 26 26 C 1.47676 * 91.08178 * 24.31797 * 14 13 12 27 27 H 1.09010 * 109.47133 * 296.04469 * 1 2 3 28 28 H 1.09001 * 109.47224 * 56.04679 * 1 2 3 29 29 H 1.09002 * 109.47228 * 176.04812 * 1 2 3 30 30 H 1.08999 * 109.47491 * 183.95919 * 3 2 1 31 31 H 1.09009 * 109.46546 * 303.95392 * 3 2 1 32 32 H 1.08999 * 109.47282 * 63.95101 * 3 2 1 33 33 H 1.09003 * 109.47047 * 50.00473 * 4 2 1 34 34 H 1.09002 * 109.46864 * 290.00150 * 4 2 1 35 35 H 1.09000 * 109.47579 * 62.60703 * 5 4 2 36 36 H 1.09005 * 109.47459 * 302.60553 * 5 4 2 37 37 H 1.09009 * 109.26788 * 101.86713 * 9 7 6 38 38 H 1.08998 * 109.27881 * 221.33707 * 9 7 6 39 39 H 1.08995 * 109.70247 * 54.07864 * 11 10 9 40 40 H 1.09001 * 109.70691 * 174.65307 * 11 10 9 41 41 H 1.08998 * 113.78846 * 205.50991 * 13 12 6 42 42 H 1.08997 * 113.79215 * 336.98318 * 13 12 6 43 43 H 0.96994 * 120.00226 * 179.97438 * 21 20 18 44 44 H 1.08999 * 113.78813 * 221.40819 * 26 14 13 45 45 H 1.09000 * 113.78433 * 89.94611 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.5044 -0.9552 0.9703 6 7 4.0192 -1.7719 2.0723 7 6 4.3294 -1.1838 3.2388 8 8 4.1366 0.0068 3.3662 9 6 4.9022 -1.9560 4.3938 10 8 4.6598 -3.3539 4.2302 11 6 5.0659 -3.8549 2.9495 12 6 4.1849 -3.2090 1.8817 13 6 2.8662 -3.9570 1.6412 14 7 3.1171 -3.7250 0.2046 15 16 2.1560 -3.6355 -1.1410 16 8 0.8564 -3.2878 -0.6835 17 8 2.8746 -2.8680 -2.0971 18 6 2.0316 -5.2639 -1.8023 19 1 2.5409 -6.0838 -1.3179 20 6 1.2831 -5.4916 -2.9376 21 7 0.6624 -4.4933 -3.5273 22 14 1.1507 -7.2181 -3.6384 23 1 1.9354 -8.1559 -2.7957 24 1 -0.2734 -7.6389 -3.6521 25 1 1.6844 -7.2323 -5.0241 26 6 4.5684 -3.6038 0.4489 27 1 -0.3634 0.4513 0.9234 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3634 -1.0252 -0.0708 30 1 3.0827 1.3433 -0.0710 31 1 1.5897 1.9163 -0.8525 32 1 1.7043 1.8724 0.9233 33 1 1.5090 -1.7406 1.1757 34 1 1.7975 -0.2246 2.0628 35 1 3.9959 0.0176 0.9786 36 1 3.7050 -1.4555 0.0228 37 1 5.9768 -1.7810 4.4460 38 1 4.4377 -1.6163 5.3195 39 1 6.1099 -3.5988 2.7690 40 1 4.9431 -4.9376 2.9226 41 1 2.8980 -5.0078 1.9289 42 1 1.9889 -3.4357 2.0240 43 1 0.1362 -4.6534 -4.3262 44 1 5.0439 -2.8019 -0.1158 45 1 5.1059 -4.5498 0.3824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275492330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:15 Heat of formation + Delta-G solvation = -131.739513 kcal Electronic energy + Delta-G solvation = -31693.602342 eV Core-core repulsion = 27452.820670 eV Total energy + Delta-G solvation = -4240.781672 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.45162 -39.86855 -38.85359 -38.10767 -37.25090 -35.99879 -35.36981 -35.15605 -31.52063 -30.62048 -28.59568 -28.31229 -28.09843 -27.46371 -26.18085 -24.78604 -22.91478 -22.20344 -20.72851 -19.56942 -19.10384 -18.76409 -18.29802 -17.80282 -17.20702 -16.91542 -16.69644 -16.46135 -16.28674 -16.09369 -15.86757 -15.84981 -15.35071 -15.24476 -14.70710 -14.52869 -14.46124 -14.20119 -13.95823 -13.80853 -13.41973 -13.33767 -13.04776 -13.03996 -12.95797 -12.88345 -12.68968 -12.61422 -12.40285 -12.31211 -12.28322 -12.07249 -11.86379 -11.81038 -11.41930 -11.27422 -10.92659 -10.45932 -10.01140 -9.80366 -9.37369 -8.73253 -7.48362 0.31615 1.31049 1.31651 1.32307 1.49185 1.59940 2.18885 2.56910 2.66168 2.77857 3.00484 3.20291 3.37390 3.63817 3.69786 3.79635 3.94463 3.97560 4.05004 4.17808 4.21393 4.30035 4.34996 4.40077 4.50977 4.54201 4.55207 4.58491 4.60055 4.66941 4.71473 4.81057 4.82772 4.87740 4.91395 4.99088 5.12770 5.23700 5.48814 5.57196 5.83309 5.92820 5.94125 6.05521 6.31136 6.78625 6.88721 8.20429 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.013004 B = 0.004951 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.591041 B = 5654.168797 C = 7271.513900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.566 5.566 3 C 0.026 3.974 4 C 0.047 3.953 5 C 0.117 3.883 6 N -0.577 5.577 7 C 0.483 3.517 8 O -0.577 6.577 9 C 0.059 3.941 10 O -0.369 6.369 11 C 0.070 3.930 12 C 0.108 3.892 13 C 0.116 3.884 14 N -1.052 6.052 15 S 2.741 3.259 16 O -1.023 7.023 17 O -1.036 7.036 18 C -1.056 5.056 19 H 0.117 0.883 20 C 0.068 3.932 21 N -0.893 5.893 22 Si 0.986 3.014 23 H -0.243 1.243 24 H -0.260 1.260 25 H -0.259 1.259 26 C 0.119 3.881 27 H 0.037 0.963 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.032 0.968 33 H 0.066 0.934 34 H 0.031 0.969 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.122 0.878 38 H 0.143 0.857 39 H 0.102 0.898 40 H 0.156 0.844 41 H 0.129 0.871 42 H 0.062 0.938 43 H 0.297 0.703 44 H 0.077 0.923 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.785 -0.308 14.630 18.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.291 5.291 3 C -0.122 4.122 4 C -0.082 4.082 5 C -0.006 4.006 6 N -0.308 5.308 7 C 0.273 3.727 8 O -0.457 6.457 9 C -0.020 4.020 10 O -0.287 6.287 11 C -0.008 4.008 12 C 0.019 3.981 13 C -0.010 4.010 14 N -0.891 5.891 15 S 2.844 3.156 16 O -1.014 7.014 17 O -1.027 7.027 18 C -1.188 5.188 19 H 0.135 0.865 20 C -0.144 4.144 21 N -0.525 5.525 22 Si 0.804 3.196 23 H -0.166 1.166 24 H -0.185 1.185 25 H -0.184 1.184 26 C -0.007 4.007 27 H 0.055 0.945 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.140 0.860 38 H 0.161 0.839 39 H 0.120 0.880 40 H 0.174 0.826 41 H 0.146 0.854 42 H 0.080 0.920 43 H 0.107 0.893 44 H 0.095 0.905 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.114 0.885 13.768 17.107 hybrid contribution -0.951 -0.350 -0.658 1.208 sum 9.163 0.535 13.110 16.004 Atomic orbital electron populations 1.22333 0.86427 1.02190 1.00834 1.61777 1.09118 1.15105 1.43094 1.22464 1.00833 0.87786 1.01085 1.22425 0.96009 0.98452 0.91290 1.21379 0.93092 0.95994 0.90159 1.47395 1.62923 1.07509 1.13017 1.22116 0.77455 0.88529 0.84583 1.90718 1.55106 1.17396 1.82485 1.22859 1.03341 0.80395 0.95391 1.88193 1.84664 1.21440 1.34362 1.23288 0.97381 1.01370 0.78759 1.22731 0.97393 0.80228 0.97735 1.23415 0.97695 1.02065 0.77815 1.60552 1.18800 1.89047 1.20726 0.99357 0.70921 0.75147 0.70125 1.93282 1.40479 1.85800 1.81795 1.93294 1.74868 1.73379 1.61130 1.31283 1.43518 1.20587 1.23441 0.86465 1.26033 0.89725 1.04451 0.94240 1.70011 1.27415 1.35180 1.19886 0.85174 0.79680 0.75907 0.78885 1.16575 1.18453 1.18357 1.23280 0.81711 1.03522 0.92171 0.94499 0.90411 0.92848 0.91379 0.90201 0.94965 0.91578 0.95057 0.90213 0.90464 0.86005 0.83948 0.87993 0.82624 0.85374 0.91978 0.89308 0.90472 0.84436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.15 9.57 127.69 1.22 2.37 16 2 N -0.57 -22.56 5.02 -948.82 -4.76 -27.32 16 3 C 0.03 0.83 9.32 127.69 1.19 2.02 16 4 C 0.05 1.83 5.16 86.30 0.45 2.27 16 5 C 0.12 4.11 4.32 86.38 0.37 4.48 16 6 N -0.58 -15.99 2.67 -787.17 -2.10 -18.09 16 7 C 0.48 12.38 7.58 87.60 0.66 13.04 16 8 O -0.58 -19.03 16.45 -3.05 -0.05 -19.08 16 9 C 0.06 0.90 6.94 71.10 0.49 1.40 16 10 O -0.37 -5.58 10.84 -148.98 -1.61 -7.19 16 11 C 0.07 0.84 6.09 71.90 0.44 1.27 16 12 C 0.11 2.44 1.56 5.37 0.01 2.44 16 13 C 0.12 3.29 7.66 86.32 0.66 3.95 16 14 N -1.05 -39.51 2.82 -535.78 -1.51 -41.02 16 15 S 2.74 147.12 5.31 -56.49 -0.30 146.82 16 16 O -1.02 -60.10 16.77 -128.00 -2.15 -62.24 16 17 O -1.04 -62.56 17.82 -128.00 -2.28 -64.84 16 18 C -1.06 -58.34 9.75 67.73 0.66 -57.68 16 19 H 0.12 5.77 7.81 -2.91 -0.02 5.75 16 20 C 0.07 3.82 5.46 84.65 0.46 4.28 16 21 N -0.89 -54.14 13.19 21.45 0.28 -53.85 16 22 Si 0.99 41.17 29.54 68.60 2.03 43.19 16 23 H -0.24 -9.27 7.11 99.48 0.71 -8.56 16 24 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 25 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 26 C 0.12 3.10 7.53 86.31 0.65 3.75 16 27 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.08 2.68 8.12 -2.39 -0.02 2.66 16 29 H 0.05 2.38 7.79 -2.39 -0.02 2.36 16 30 H 0.07 2.11 6.53 -2.39 -0.02 2.10 16 31 H 0.08 2.30 8.12 -2.38 -0.02 2.28 16 32 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 2.84 5.11 -2.39 -0.01 2.82 16 34 H 0.03 1.19 7.99 -2.39 -0.02 1.17 16 35 H 0.08 2.75 6.09 -2.39 -0.01 2.74 16 36 H 0.08 3.07 5.03 -2.38 -0.01 3.06 16 37 H 0.12 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.10 0.71 8.13 -2.39 -0.02 0.69 16 40 H 0.16 0.98 7.86 -2.39 -0.02 0.96 16 41 H 0.13 2.65 7.90 -2.39 -0.02 2.64 16 42 H 0.06 2.02 6.71 -2.39 -0.02 2.01 16 43 H 0.30 16.17 8.31 -92.71 -0.77 15.40 16 44 H 0.08 2.19 7.02 -2.39 -0.02 2.18 16 45 H 0.14 2.39 8.09 -2.39 -0.02 2.38 16 Total: -1.00 -87.31 371.84 -4.18 -91.49 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 1.01 Total: 28.53 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 7.27 Total: -16.38 kcal Atomic # 7 Polarization: -132.20 SS G_CDS: -8.09 Total: -140.29 kcal Atomic # 8 Polarization: -147.26 SS G_CDS: -6.09 Total: -153.36 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.19 kcal Atomic # 16 Polarization: 147.12 SS G_CDS: -0.30 Total: 146.82 kcal Total: -87.31 -4.18 -91.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275492330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.252 kcal (2) G-P(sol) polarization free energy of solvation -87.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds