Wall clock time and date at job start Wed Apr 1 2020 06:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99895 * 2 1 4 4 C 1.52999 * 109.47283 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47233 * 64.99653 * 4 3 2 6 6 C 1.46497 * 120.00396 * 270.00203 * 5 4 3 7 7 C 1.50698 * 109.47307 * 275.71743 * 6 5 4 8 8 H 1.08002 * 120.00026 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99836 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00051 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99735 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47038 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47173 * 119.99987 * 11 9 7 14 14 H 1.48506 * 109.46933 * 239.99860 * 11 9 7 15 15 C 1.34778 * 120.00018 * 90.00570 * 5 4 3 16 16 O 1.21582 * 119.99749 * 5.01201 * 15 5 4 17 17 C 1.47654 * 120.00104 * 185.01610 * 15 5 4 18 18 C 1.39872 * 120.03858 * 311.58447 * 17 15 5 19 19 C 1.37525 * 120.09443 * 179.74780 * 18 17 15 20 20 C 1.39333 * 120.25282 * 0.24695 * 19 18 17 21 21 N 1.38870 * 119.51138 * 180.02562 * 20 19 18 22 22 H 0.97001 * 119.90271 * 0.02965 * 21 20 19 23 23 C 1.34808 * 120.19899 * 180.02562 * 21 20 19 24 24 O 1.21439 * 120.32423 * 180.02562 * 23 21 20 25 25 C 1.49198 * 119.35262 * 0.02562 * 23 21 20 26 26 O 1.21455 * 120.35720 * 180.02562 * 25 23 21 27 27 N 1.34847 * 119.27658 * 359.97438 * 25 23 21 28 28 H 0.97001 * 119.97245 * 180.02562 * 27 25 23 29 29 C 1.39309 * 120.06013 * 359.97438 * 27 25 23 30 30 C 1.38689 * 119.57174 * 180.02562 * 29 27 25 31 31 H 1.08994 * 109.47245 * 300.00489 * 1 2 3 32 32 H 1.09004 * 109.47077 * 59.99946 * 1 2 3 33 33 H 1.08992 * 109.47166 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47413 * 59.99658 * 3 2 1 35 35 H 1.08998 * 109.47590 * 299.99811 * 3 2 1 36 36 H 1.09000 * 109.46926 * 305.00029 * 4 3 2 37 37 H 1.08996 * 109.47458 * 185.00196 * 4 3 2 38 38 H 1.08997 * 109.46741 * 35.71582 * 6 5 4 39 39 H 1.08996 * 109.47362 * 155.71365 * 6 5 4 40 40 H 0.97002 * 119.99734 * 180.02562 * 10 9 7 41 41 H 1.07993 * 119.95364 * 0.02562 * 18 17 15 42 42 H 1.08009 * 119.87139 * 180.28048 * 19 18 17 43 43 H 1.08003 * 120.03672 * 359.97142 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.1052 -0.8920 -1.3427 7 6 5.4524 -1.3102 -0.8123 8 1 6.1431 -0.5656 -0.4453 9 6 5.8030 -2.6436 -0.7957 10 7 4.9616 -3.5504 -1.2422 11 14 7.4726 -3.1621 -0.1376 12 1 8.2265 -1.9604 0.3014 13 1 7.2872 -4.0793 1.0155 14 1 8.2317 -3.8587 -1.2071 15 6 4.2615 1.3337 -2.3217 16 8 4.2425 2.5452 -2.2214 17 6 4.5978 0.7052 -3.6148 18 6 5.5420 -0.3254 -3.6679 19 6 5.8523 -0.9151 -4.8709 20 6 5.2328 -0.4868 -6.0431 21 7 5.5573 -1.0935 -7.2494 22 1 6.2108 -1.8100 -7.2699 23 6 4.9668 -0.6897 -8.3920 24 8 5.2485 -1.2190 -9.4480 25 6 3.9637 0.4138 -8.3464 26 8 3.4202 0.7917 -9.3647 27 7 3.6663 0.9862 -7.1622 28 1 3.0154 1.7042 -7.1209 29 6 4.2924 0.5467 -5.9979 30 6 3.9786 1.1422 -4.7854 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6885 1.8464 0.8899 35 1 1.6886 1.8464 -0.8900 36 1 3.8514 0.5683 0.8409 37 1 3.9785 2.1765 0.0890 38 1 3.3199 -1.3638 -0.7522 39 1 4.0126 -1.2014 -2.3837 40 1 5.2082 -4.4885 -1.2301 41 1 6.0247 -0.6615 -2.7622 42 1 6.5786 -1.7137 -4.9070 43 1 3.2534 1.9417 -4.7474 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319385068.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:07:53 Heat of formation + Delta-G solvation = -106.485674 kcal Electronic energy + Delta-G solvation = -30809.856484 eV Core-core repulsion = 26434.725950 eV Total energy + Delta-G solvation = -4375.130534 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.81292 -39.88157 -38.67814 -38.59244 -37.46973 -35.65425 -35.12477 -34.93604 -32.80313 -30.60383 -30.14130 -28.87485 -27.26651 -26.07780 -25.82622 -24.18486 -23.17977 -23.02461 -22.20662 -19.93087 -19.22719 -18.39419 -18.13522 -17.65690 -16.69891 -16.56620 -16.46214 -16.14979 -15.83232 -15.60159 -15.28469 -14.93200 -14.87257 -14.42573 -14.30428 -14.24754 -13.91265 -13.78344 -13.44504 -13.29175 -12.60729 -12.46816 -12.15986 -11.86253 -11.75219 -11.66940 -11.59710 -11.29039 -11.09350 -11.02387 -10.98838 -10.83567 -10.48160 -10.20650 -10.16005 -9.82902 -9.51158 -9.29359 -8.68581 -8.56158 -7.88279 -7.76243 -6.30458 -4.38947 0.72749 1.04807 1.55534 2.25705 2.73157 2.79237 3.11841 3.22400 3.23593 3.27245 3.60126 3.78477 3.94657 4.08664 4.22927 4.48905 4.89567 5.00281 5.17336 5.30168 5.31910 5.41053 5.44184 5.54270 5.56208 5.57458 5.61908 5.74359 5.80457 5.97800 6.04327 6.23676 6.27993 6.43459 6.51398 6.61479 6.69051 6.82307 7.03364 7.17454 7.21272 7.39559 7.44842 7.65820 7.67507 7.93759 8.19340 8.63063 8.80398 9.27672 10.74703 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.009060 B = 0.004007 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3089.707176 B = 6985.462416 C = 8969.104609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.048 3.952 4 C 0.121 3.879 5 N -0.577 5.577 6 C 0.229 3.771 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.071 3.929 10 N -0.878 5.878 11 Si 0.890 3.110 12 H -0.271 1.271 13 H -0.282 1.282 14 H -0.281 1.281 15 C 0.557 3.443 16 O -0.569 6.569 17 C -0.102 4.102 18 C -0.048 4.048 19 C -0.126 4.126 20 C 0.129 3.871 21 N -0.627 5.627 22 H 0.422 0.578 23 C 0.508 3.492 24 O -0.481 6.481 25 C 0.508 3.492 26 O -0.484 6.484 27 N -0.627 5.627 28 H 0.421 0.579 29 C 0.092 3.908 30 C -0.074 4.074 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.045 0.955 40 H 0.266 0.734 41 H 0.182 0.818 42 H 0.142 0.858 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.178 5.783 -1.642 6.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.030 4.030 4 C -0.003 4.003 5 N -0.305 5.305 6 C 0.109 3.891 7 C -0.584 4.584 8 H 0.082 0.918 9 C -0.134 4.134 10 N -0.515 5.515 11 Si 0.717 3.283 12 H -0.195 1.195 13 H -0.208 1.208 14 H -0.207 1.207 15 C 0.345 3.655 16 O -0.451 6.451 17 C -0.107 4.107 18 C -0.067 4.067 19 C -0.147 4.147 20 C 0.029 3.971 21 N -0.276 5.276 22 H 0.262 0.738 23 C 0.290 3.710 24 O -0.351 6.351 25 C 0.290 3.710 26 O -0.354 6.354 27 N -0.276 5.276 28 H 0.260 0.740 29 C -0.006 4.006 30 C -0.096 4.096 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.199 0.801 42 H 0.159 0.841 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.292 5.895 -2.973 7.377 hybrid contribution 0.556 -0.373 0.547 0.864 sum -2.736 5.522 -2.426 6.623 Atomic orbital electron populations 1.22682 0.82121 1.02449 0.99173 1.88065 1.18680 1.27317 1.95198 1.23022 0.95169 0.85033 0.99807 1.21377 0.91087 0.99824 0.87994 1.48095 1.62515 1.10149 1.09762 1.19749 0.97679 0.72522 0.99116 1.21517 1.01093 0.92542 1.43257 0.91760 1.24934 0.97298 0.96338 0.94787 1.69946 1.35215 1.01548 1.44784 0.86568 0.83777 0.78934 0.79033 1.19495 1.20779 1.20712 1.18144 0.77173 0.86181 0.84051 1.90709 1.55239 1.13948 1.85224 1.19713 0.99544 0.98257 0.93160 1.22376 0.94025 0.90534 0.99811 1.20702 1.02056 1.02202 0.89742 1.17561 0.98064 0.95132 0.86298 1.43628 1.41743 1.36855 1.05325 0.73756 1.20150 0.82489 0.84371 0.84005 1.90882 1.60951 1.54443 1.28817 1.20098 0.83712 0.83631 0.83553 1.90884 1.50495 1.61375 1.32666 1.43622 1.41694 1.37033 1.05265 0.73963 1.17039 0.98414 0.98429 0.86695 1.20513 1.00679 0.99574 0.88808 0.94685 0.94665 0.89842 0.93061 0.93503 0.89038 0.89175 0.93072 0.93768 0.92403 0.80085 0.84053 0.84349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.37 -6.10 9.45 -35.23 -0.33 -6.43 16 3 C 0.05 0.69 6.28 37.16 0.23 0.93 16 4 C 0.12 1.98 5.87 -4.05 -0.02 1.96 16 5 N -0.58 -10.79 2.42 -176.26 -0.43 -11.22 16 6 C 0.23 4.84 4.52 -5.20 -0.02 4.82 16 7 C -0.55 -12.30 6.83 -34.44 -0.24 -12.53 16 8 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 9 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 10 N -0.88 -21.73 13.29 55.43 0.74 -20.99 16 11 Si 0.89 18.32 29.54 -169.99 -5.02 13.30 16 12 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 13 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 14 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 15 C 0.56 10.28 7.23 -12.42 -0.09 10.19 16 16 O -0.57 -11.36 16.57 5.29 0.09 -11.27 16 17 C -0.10 -1.67 4.95 -104.99 -0.52 -2.19 16 18 C -0.05 -0.78 7.50 -39.23 -0.29 -1.07 16 19 C -0.13 -1.69 9.83 -39.43 -0.39 -2.08 16 20 C 0.13 1.64 6.62 -83.68 -0.55 1.08 16 21 N -0.63 -7.34 5.37 -10.22 -0.05 -7.39 16 22 H 0.42 3.96 8.78 -40.82 -0.36 3.60 16 23 C 0.51 7.19 8.00 -11.69 -0.09 7.10 16 24 O -0.48 -8.12 17.80 -10.83 -0.19 -8.31 16 25 C 0.51 7.17 8.01 -11.67 -0.09 7.08 16 26 O -0.48 -8.13 17.81 -10.85 -0.19 -8.32 16 27 N -0.63 -7.27 5.39 -10.26 -0.06 -7.32 16 28 H 0.42 3.87 8.79 -40.82 -0.36 3.51 16 29 C 0.09 1.17 6.61 -83.71 -0.55 0.62 16 30 C -0.07 -1.01 9.52 -38.96 -0.37 -1.38 16 31 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.09 1.53 8.07 -51.93 -0.42 1.11 16 37 H 0.09 1.41 7.36 -51.93 -0.38 1.02 16 38 H 0.05 1.21 7.03 -51.93 -0.37 0.85 16 39 H 0.04 0.97 5.41 -51.93 -0.28 0.69 16 40 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 41 H 0.18 3.34 4.73 -52.49 -0.25 3.10 16 42 H 0.14 1.61 8.06 -52.48 -0.42 1.18 16 43 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -29.83 370.31 -6.78 -36.61 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -4.92 Total: 8.19 kcal Atomic # 6 Polarization: 19.57 SS G_CDS: -1.99 Total: 17.58 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.20 Total: -46.92 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -0.63 Total: -34.33 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.02 Total: 13.30 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.83 -6.78 -36.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319385068.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.876 kcal (2) G-P(sol) polarization free energy of solvation -29.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds