Wall clock time and date at job start Wed Apr 1 2020 06:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99895 * 2 1 4 4 C 1.52999 * 109.47283 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47233 * 64.99653 * 4 3 2 6 6 C 1.46497 * 120.00396 * 270.00203 * 5 4 3 7 7 C 1.50698 * 109.47307 * 275.71743 * 6 5 4 8 8 H 1.08002 * 120.00026 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99836 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00051 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99735 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47038 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47173 * 119.99987 * 11 9 7 14 14 H 1.48506 * 109.46933 * 239.99860 * 11 9 7 15 15 C 1.34778 * 120.00018 * 90.00570 * 5 4 3 16 16 O 1.21582 * 119.99749 * 5.01201 * 15 5 4 17 17 C 1.47654 * 120.00104 * 185.01610 * 15 5 4 18 18 C 1.39872 * 120.03858 * 311.58447 * 17 15 5 19 19 C 1.37525 * 120.09443 * 179.74780 * 18 17 15 20 20 C 1.39333 * 120.25282 * 0.24695 * 19 18 17 21 21 N 1.38870 * 119.51138 * 180.02562 * 20 19 18 22 22 H 0.97001 * 119.90271 * 0.02965 * 21 20 19 23 23 C 1.34808 * 120.19899 * 180.02562 * 21 20 19 24 24 O 1.21439 * 120.32423 * 180.02562 * 23 21 20 25 25 C 1.49198 * 119.35262 * 0.02562 * 23 21 20 26 26 O 1.21455 * 120.35720 * 180.02562 * 25 23 21 27 27 N 1.34847 * 119.27658 * 359.97438 * 25 23 21 28 28 H 0.97001 * 119.97245 * 180.02562 * 27 25 23 29 29 C 1.39309 * 120.06013 * 359.97438 * 27 25 23 30 30 C 1.38689 * 119.57174 * 180.02562 * 29 27 25 31 31 H 1.08994 * 109.47245 * 300.00489 * 1 2 3 32 32 H 1.09004 * 109.47077 * 59.99946 * 1 2 3 33 33 H 1.08992 * 109.47166 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47413 * 59.99658 * 3 2 1 35 35 H 1.08998 * 109.47590 * 299.99811 * 3 2 1 36 36 H 1.09000 * 109.46926 * 305.00029 * 4 3 2 37 37 H 1.08996 * 109.47458 * 185.00196 * 4 3 2 38 38 H 1.08997 * 109.46741 * 35.71582 * 6 5 4 39 39 H 1.08996 * 109.47362 * 155.71365 * 6 5 4 40 40 H 0.97002 * 119.99734 * 180.02562 * 10 9 7 41 41 H 1.07993 * 119.95364 * 0.02562 * 18 17 15 42 42 H 1.08009 * 119.87139 * 180.28048 * 19 18 17 43 43 H 1.08003 * 120.03672 * 359.97142 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.1052 -0.8920 -1.3427 7 6 5.4524 -1.3102 -0.8123 8 1 6.1431 -0.5656 -0.4453 9 6 5.8030 -2.6436 -0.7957 10 7 4.9616 -3.5504 -1.2422 11 14 7.4726 -3.1621 -0.1376 12 1 8.2265 -1.9604 0.3014 13 1 7.2872 -4.0793 1.0155 14 1 8.2317 -3.8587 -1.2071 15 6 4.2615 1.3337 -2.3217 16 8 4.2425 2.5452 -2.2214 17 6 4.5978 0.7052 -3.6148 18 6 5.5420 -0.3254 -3.6679 19 6 5.8523 -0.9151 -4.8709 20 6 5.2328 -0.4868 -6.0431 21 7 5.5573 -1.0935 -7.2494 22 1 6.2108 -1.8100 -7.2699 23 6 4.9668 -0.6897 -8.3920 24 8 5.2485 -1.2190 -9.4480 25 6 3.9637 0.4138 -8.3464 26 8 3.4202 0.7917 -9.3647 27 7 3.6663 0.9862 -7.1622 28 1 3.0154 1.7042 -7.1209 29 6 4.2924 0.5467 -5.9979 30 6 3.9786 1.1422 -4.7854 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.6885 1.8464 0.8899 35 1 1.6886 1.8464 -0.8900 36 1 3.8514 0.5683 0.8409 37 1 3.9785 2.1765 0.0890 38 1 3.3199 -1.3638 -0.7522 39 1 4.0126 -1.2014 -2.3837 40 1 5.2082 -4.4885 -1.2301 41 1 6.0247 -0.6615 -2.7622 42 1 6.5786 -1.7137 -4.9070 43 1 3.2534 1.9417 -4.7474 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319385068.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:07:52 Heat of formation + Delta-G solvation = -126.835588 kcal Electronic energy + Delta-G solvation = -30810.738923 eV Core-core repulsion = 26434.725950 eV Total energy + Delta-G solvation = -4376.012973 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.94534 -41.22228 -39.92238 -39.75686 -38.65859 -36.94261 -36.51472 -36.09970 -34.52100 -31.87200 -31.31739 -30.10786 -28.88319 -27.16021 -26.93384 -25.43798 -24.68214 -24.33850 -23.41728 -21.18980 -20.35652 -19.63355 -19.26833 -18.86739 -18.40225 -17.80956 -17.60381 -17.52191 -17.02942 -16.80918 -16.57339 -16.36651 -16.16613 -15.80854 -15.49051 -15.40459 -15.10123 -14.92671 -14.70784 -14.55288 -14.11821 -13.96945 -13.45327 -13.22235 -13.07014 -12.96337 -12.74439 -12.63900 -12.61570 -12.40771 -12.30921 -12.06944 -11.98520 -11.67827 -11.50798 -11.34260 -10.87001 -10.56085 -10.43726 -9.68771 -9.39896 -8.93303 -8.09878 -6.22893 -0.43412 -0.12522 0.44087 1.17001 1.47308 1.52566 1.55629 1.62127 1.67839 1.94354 2.28081 2.49279 2.63350 2.75769 2.99442 3.19738 3.38941 3.65000 3.98816 4.16867 4.20401 4.28155 4.35035 4.44510 4.47422 4.56577 4.58822 4.61700 4.71877 4.88554 4.94696 4.96652 5.08279 5.11994 5.36438 5.44357 5.45933 5.46960 5.61217 5.75963 5.87223 5.91054 6.15512 6.17307 6.33218 6.60650 6.64116 6.90723 7.28115 7.47738 8.94911 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.009060 B = 0.004007 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3089.707176 B = 6985.462416 C = 8969.104609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.408 6.408 3 C 0.054 3.946 4 C 0.114 3.886 5 N -0.581 5.581 6 C 0.250 3.750 7 C -0.541 4.541 8 H 0.057 0.943 9 C 0.036 3.964 10 N -0.909 5.909 11 Si 0.943 3.057 12 H -0.270 1.270 13 H -0.289 1.289 14 H -0.274 1.274 15 C 0.555 3.445 16 O -0.587 6.587 17 C -0.123 4.123 18 C -0.062 4.062 19 C -0.116 4.116 20 C 0.136 3.864 21 N -0.608 5.608 22 H 0.436 0.564 23 C 0.510 3.490 24 O -0.510 6.510 25 C 0.511 3.489 26 O -0.513 6.513 27 N -0.607 5.607 28 H 0.435 0.565 29 C 0.099 3.901 30 C -0.063 4.063 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.043 0.957 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.023 0.977 39 H 0.039 0.961 40 H 0.266 0.734 41 H 0.158 0.842 42 H 0.163 0.837 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.091 6.240 -1.809 7.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.328 6.328 3 C -0.023 4.023 4 C -0.009 4.009 5 N -0.309 5.309 6 C 0.129 3.871 7 C -0.579 4.579 8 H 0.075 0.925 9 C -0.166 4.166 10 N -0.547 5.547 11 Si 0.770 3.230 12 H -0.194 1.194 13 H -0.215 1.215 14 H -0.199 1.199 15 C 0.344 3.656 16 O -0.470 6.470 17 C -0.127 4.127 18 C -0.082 4.082 19 C -0.137 4.137 20 C 0.036 3.964 21 N -0.256 5.256 22 H 0.278 0.722 23 C 0.293 3.707 24 O -0.383 6.383 25 C 0.293 3.707 26 O -0.385 6.385 27 N -0.256 5.256 28 H 0.277 0.723 29 C 0.001 3.999 30 C -0.084 4.084 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.041 0.959 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.175 0.825 42 H 0.181 0.819 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.203 6.370 -3.100 7.775 hybrid contribution 0.502 -0.474 0.648 0.946 sum -2.701 5.896 -2.453 6.934 Atomic orbital electron populations 1.22855 0.80140 1.03222 1.00608 1.88016 1.20989 1.28298 1.95475 1.22958 0.93577 0.84775 1.01015 1.21529 0.92822 0.99675 0.86825 1.48084 1.62764 1.09267 1.10825 1.19313 0.96003 0.73797 0.97966 1.21606 1.01381 0.92423 1.42518 0.92453 1.25462 0.99723 0.96363 0.95017 1.70031 1.36699 1.01734 1.46223 0.85733 0.80749 0.78274 0.78275 1.19401 1.21534 1.19935 1.18439 0.76548 0.85975 0.84607 1.90687 1.56155 1.14546 1.85634 1.19645 1.00859 0.99207 0.93002 1.22095 0.94763 0.91405 0.99931 1.20787 1.01991 1.02061 0.88846 1.17540 0.97652 0.94862 0.86306 1.43474 1.41256 1.36602 1.04312 0.72165 1.20136 0.82404 0.84192 0.83982 1.90876 1.62022 1.55513 1.29847 1.20058 0.83480 0.83542 0.83611 1.90878 1.51672 1.62356 1.33640 1.43456 1.41239 1.36749 1.04187 0.72305 1.17003 0.98132 0.98135 0.86649 1.20579 1.00284 0.99534 0.88022 0.92542 0.93845 0.89512 0.90107 0.93822 0.89921 0.88494 0.95896 0.94358 0.92439 0.82460 0.81902 0.82528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.89 16 2 O -0.41 -13.16 9.45 -148.98 -1.41 -14.57 16 3 C 0.05 1.53 6.28 71.98 0.45 1.98 16 4 C 0.11 3.75 5.87 86.38 0.51 4.26 16 5 N -0.58 -21.91 2.42 -829.82 -2.01 -23.92 16 6 C 0.25 10.75 4.52 85.63 0.39 11.14 16 7 C -0.54 -24.61 6.83 25.60 0.17 -24.44 16 8 H 0.06 2.65 7.81 -2.91 -0.02 2.63 16 9 C 0.04 1.69 5.46 84.66 0.46 2.15 16 10 N -0.91 -45.18 13.29 21.45 0.28 -44.89 16 11 Si 0.94 37.38 29.54 68.60 2.03 39.41 16 12 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 13 H -0.29 -11.75 7.11 99.48 0.71 -11.04 16 14 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 15 C 0.56 20.35 7.23 86.73 0.63 20.97 16 16 O -0.59 -23.06 16.57 -3.97 -0.07 -23.13 16 17 C -0.12 -3.91 4.95 -20.10 -0.10 -4.01 16 18 C -0.06 -1.97 7.50 22.50 0.17 -1.80 16 19 C -0.12 -2.90 9.83 22.36 0.22 -2.68 16 20 C 0.14 3.14 6.62 38.67 0.26 3.39 16 21 N -0.61 -12.79 5.37 -304.57 -1.64 -14.42 16 22 H 0.44 7.06 8.78 -92.71 -0.81 6.24 16 23 C 0.51 13.58 8.00 87.19 0.70 14.27 16 24 O -0.51 -16.67 17.80 12.02 0.21 -16.45 16 25 C 0.51 13.52 8.01 87.18 0.70 14.22 16 26 O -0.51 -16.64 17.81 11.97 0.21 -16.43 16 27 N -0.61 -12.62 5.39 -304.66 -1.64 -14.26 16 28 H 0.43 6.85 8.79 -92.71 -0.81 6.04 16 29 C 0.10 2.28 6.61 38.44 0.25 2.54 16 30 C -0.06 -1.59 9.52 22.67 0.22 -1.37 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 2.81 8.07 -2.39 -0.02 2.79 16 37 H 0.10 3.00 7.36 -2.39 -0.02 2.98 16 38 H 0.02 1.12 7.03 -2.39 -0.02 1.10 16 39 H 0.04 1.70 5.41 -2.39 -0.01 1.69 16 40 H 0.27 12.67 8.31 -92.71 -0.77 11.90 16 41 H 0.16 5.83 4.73 -2.91 -0.01 5.82 16 42 H 0.16 3.31 8.06 -2.91 -0.02 3.28 16 43 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -63.89 370.31 1.72 -62.17 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -0.53 Total: 23.98 kcal Atomic # 6 Polarization: 36.26 SS G_CDS: 6.27 Total: 42.53 kcal Atomic # 7 Polarization: -92.50 SS G_CDS: -5.00 Total: -97.50 kcal Atomic # 8 Polarization: -69.54 SS G_CDS: -1.05 Total: -70.58 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 2.03 Total: 39.41 kcal Total: -63.89 1.72 -62.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319385068.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.668 kcal (2) G-P(sol) polarization free energy of solvation -63.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds