Wall clock time and date at job start Wed Apr 1 2020 05:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46758 * 124.34904 * 2 1 4 4 C 1.54486 * 105.47202 * 162.98447 * 3 2 1 5 5 C 1.54623 * 101.76196 * 25.41345 * 4 3 2 6 6 H 1.09001 * 110.48241 * 216.39132 * 5 4 3 7 7 N 1.46501 * 110.48666 * 93.88462 * 5 4 3 8 8 C 1.34779 * 120.00008 * 154.99789 * 7 5 4 9 9 O 1.21352 * 119.99844 * 359.97438 * 8 7 5 10 10 C 1.49353 * 119.99726 * 180.02562 * 8 7 5 11 11 O 1.21373 * 119.99989 * 359.97438 * 10 8 7 12 12 N 1.34775 * 119.99612 * 180.27510 * 10 8 7 13 13 C 1.39729 * 119.99875 * 174.51499 * 12 10 8 14 14 C 1.39016 * 120.04234 * 146.37998 * 13 12 10 15 15 C 1.38143 * 120.06080 * 180.02562 * 14 13 12 16 16 C 1.38173 * 120.14802 * 0.02562 * 15 14 13 17 17 C 1.38928 * 120.08114 * 0.02562 * 16 15 14 18 18 O 1.35748 * 120.03206 * 179.97438 * 17 16 15 19 19 C 1.34828 * 117.00131 * 5.90754 * 18 17 16 20 20 H 1.08003 * 119.99798 * 5.42127 * 19 18 17 21 21 C 1.38644 * 120.00102 * 185.41478 * 19 18 17 22 22 N 1.31555 * 120.00213 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00272 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46965 * 89.99761 * 23 21 19 25 25 H 1.48493 * 109.47221 * 210.00153 * 23 21 19 26 26 H 1.48502 * 109.46855 * 330.00505 * 23 21 19 27 27 C 1.38759 * 119.93589 * 359.68081 * 17 16 15 28 28 C 1.34413 * 124.34466 * 179.97438 * 2 1 3 29 29 O 1.21279 * 124.94495 * 0.45638 * 28 2 1 30 30 H 1.09004 * 109.47322 * 89.99691 * 1 2 3 31 31 H 1.08994 * 109.47391 * 210.00546 * 1 2 3 32 32 H 1.09004 * 109.47100 * 330.00136 * 1 2 3 33 33 H 1.08998 * 110.25094 * 43.98071 * 3 2 1 34 34 H 1.09002 * 110.24416 * 281.98098 * 3 2 1 35 35 H 1.09003 * 110.96348 * 267.29485 * 4 3 2 36 36 H 1.08996 * 110.99762 * 143.54975 * 4 3 2 37 37 H 0.97004 * 119.99776 * 334.99664 * 7 5 4 38 38 H 0.96998 * 120.00326 * 354.50858 * 12 10 8 39 39 H 1.07999 * 119.97022 * 0.02562 * 14 13 12 40 40 H 1.08008 * 119.92659 * 179.97438 * 15 14 13 41 41 H 1.07992 * 119.96447 * 179.97438 * 16 15 14 42 42 H 0.97004 * 120.00378 * 179.97438 * 22 21 19 43 43 H 1.07994 * 120.07562 * 180.29130 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7011 0.7486 0.4357 5 6 3.6897 -0.7379 0.0101 6 1 4.2346 -1.3456 0.7326 7 7 4.2672 -0.8927 -1.3273 8 6 4.8157 -2.0685 -1.6925 9 8 4.8315 -2.9986 -0.9133 10 6 5.4049 -2.2261 -3.0558 11 8 5.3894 -1.2956 -3.8350 12 7 5.9484 -3.4035 -3.4230 13 6 6.3957 -3.5879 -4.7338 14 6 7.5028 -4.3904 -4.9849 15 6 7.9457 -4.5726 -6.2807 16 6 7.2909 -3.9580 -7.3308 17 6 6.1846 -3.1540 -7.0866 18 8 5.5424 -2.5502 -8.1190 19 6 5.9510 -2.8680 -9.3639 20 1 6.6945 -3.6380 -9.5081 21 6 5.4168 -2.2063 -10.4589 22 7 4.5116 -1.2681 -10.2833 23 14 5.9825 -2.6470 -12.1839 24 1 5.1187 -3.7257 -12.7276 25 1 5.8878 -1.4495 -13.0569 26 1 7.3907 -3.1163 -12.1382 27 6 5.7331 -2.9735 -5.7870 28 6 2.2234 -1.1098 0.0005 29 8 1.7945 -2.2442 -0.0069 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.8985 1.9383 0.7101 34 1 2.3306 1.6428 -1.0004 35 1 3.8268 0.8447 1.5142 36 1 4.4758 1.3008 -0.0962 37 1 4.2548 -0.1490 -1.9500 38 1 6.0290 -4.1228 -2.7773 39 1 8.0170 -4.8718 -4.1663 40 1 8.8063 -5.1962 -6.4733 41 1 7.6400 -4.1022 -8.3425 42 1 4.1381 -0.8048 -11.0494 43 1 4.8704 -2.3527 -5.5951 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321293517.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:14 Heat of formation + Delta-G solvation = -110.117744 kcal Electronic energy + Delta-G solvation = -29436.670920 eV Core-core repulsion = 25061.382887 eV Total energy + Delta-G solvation = -4375.288033 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.41513 -41.61692 -40.65985 -39.72681 -38.31110 -37.75073 -36.27904 -35.44356 -34.26700 -32.63574 -31.33062 -30.31057 -28.55369 -27.75376 -27.35190 -25.97478 -23.77366 -23.10003 -22.77841 -21.69708 -20.79730 -20.24173 -19.79793 -18.94100 -18.42902 -17.76487 -17.50179 -17.24457 -16.94884 -16.79872 -16.62236 -16.29556 -15.99431 -15.71155 -15.56986 -15.36968 -15.09713 -14.74131 -14.73158 -14.37538 -14.32345 -13.95037 -13.62789 -13.60934 -13.27352 -13.26992 -13.19337 -12.80460 -12.67565 -12.42838 -12.40391 -12.37227 -12.12215 -11.72085 -11.45520 -11.37426 -10.83998 -10.76742 -10.34120 -9.81970 -9.43433 -8.95190 -8.46734 -6.16131 -0.12390 0.54872 0.66801 0.84209 1.35891 1.45815 1.48649 1.54350 1.85937 2.00737 2.17466 2.46572 2.80267 3.11725 3.16530 3.20791 3.30494 3.52465 3.80451 4.07647 4.08680 4.30764 4.33212 4.36523 4.39805 4.52282 4.56541 4.67117 4.68754 4.78333 4.81749 4.91830 4.94886 5.08697 5.10149 5.22669 5.32160 5.43886 5.58979 5.69560 5.70873 5.93450 6.01543 6.09271 6.14937 6.53185 6.73227 6.96013 6.97104 7.77669 8.76803 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.013658 B = 0.002329 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.634066 B =12021.982310 C =13430.863465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.617 5.617 3 C 0.090 3.910 4 C -0.124 4.124 5 C 0.110 3.890 6 H 0.125 0.875 7 N -0.675 5.675 8 C 0.522 3.478 9 O -0.520 6.520 10 C 0.502 3.498 11 O -0.519 6.519 12 N -0.627 5.627 13 C 0.176 3.824 14 C -0.199 4.199 15 C -0.045 4.045 16 C -0.247 4.247 17 C 0.130 3.870 18 O -0.232 6.232 19 C -0.413 4.413 20 H 0.107 0.893 21 C -0.025 4.025 22 N -0.922 5.922 23 Si 1.022 2.978 24 H -0.264 1.264 25 H -0.272 1.272 26 H -0.248 1.248 27 C -0.208 4.208 28 C 0.487 3.513 29 O -0.571 6.571 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.425 0.575 38 H 0.434 0.566 39 H 0.163 0.837 40 H 0.164 0.836 41 H 0.127 0.873 42 H 0.272 0.728 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.773 5.517 23.637 24.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.351 5.351 3 C -0.031 4.031 4 C -0.162 4.162 5 C 0.002 3.998 6 H 0.142 0.858 7 N -0.330 5.330 8 C 0.301 3.699 9 O -0.395 6.395 10 C 0.284 3.716 11 O -0.393 6.393 12 N -0.275 5.275 13 C 0.082 3.918 14 C -0.219 4.219 15 C -0.064 4.064 16 C -0.267 4.267 17 C 0.078 3.922 18 O -0.138 6.138 19 C -0.489 4.489 20 H 0.125 0.875 21 C -0.222 4.222 22 N -0.560 5.560 23 Si 0.841 3.159 24 H -0.189 1.189 25 H -0.197 1.197 26 H -0.172 1.172 27 C -0.230 4.230 28 C 0.272 3.728 29 O -0.449 6.449 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.129 0.871 33 H 0.139 0.861 34 H 0.103 0.897 35 H 0.148 0.852 36 H 0.144 0.856 37 H 0.264 0.736 38 H 0.274 0.726 39 H 0.181 0.819 40 H 0.181 0.819 41 H 0.145 0.855 42 H 0.081 0.919 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.088 5.270 23.590 24.172 hybrid contribution -0.486 -0.106 -1.072 1.182 sum -0.398 5.165 22.518 23.106 Atomic orbital electron populations 1.21735 0.76992 1.04209 1.02327 1.48409 1.07541 1.07693 1.71455 1.22570 0.89854 0.86430 1.04276 1.23088 0.97887 0.89495 1.05700 1.21930 0.90327 1.02438 0.85076 0.85756 1.45451 1.57151 1.13922 1.16525 1.19768 0.79363 0.83991 0.86730 1.90795 1.56722 1.39327 1.52645 1.20438 0.79441 0.83360 0.88401 1.90866 1.54987 1.39893 1.53603 1.42960 1.58296 1.15508 1.10754 1.17283 0.94335 0.98264 0.81885 1.20909 0.97089 1.05387 0.98529 1.21056 0.98364 0.96251 0.90698 1.21391 0.99167 1.04779 1.01370 1.19584 0.91896 0.92272 0.88418 1.83965 1.55068 1.60596 1.14166 1.21897 1.25713 1.21514 0.79800 0.87546 1.26675 0.96020 0.95175 1.04373 1.70212 1.28263 1.24445 1.33120 0.84544 0.79481 0.78168 0.73724 1.18869 1.19727 1.17184 1.20003 1.03909 1.08990 0.90080 1.21753 0.90795 0.84553 0.75662 1.90728 1.79380 1.23515 1.51262 0.92784 0.92276 0.87063 0.86138 0.89686 0.85211 0.85583 0.73553 0.72576 0.81936 0.81888 0.85490 0.91858 0.88072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.14 10.96 127.77 1.40 2.54 16 2 N -0.62 -9.43 3.33 -842.90 -2.81 -12.24 16 3 C 0.09 0.51 7.35 86.84 0.64 1.15 16 4 C -0.12 -0.59 6.78 31.65 0.21 -0.38 16 5 C 0.11 1.83 3.28 44.98 0.15 1.97 16 6 H 0.12 2.20 7.55 -2.39 -0.02 2.18 16 7 N -0.67 -13.98 5.09 -444.00 -2.26 -16.25 16 8 C 0.52 14.44 7.89 87.24 0.69 15.13 16 9 O -0.52 -16.12 16.13 -3.25 -0.05 -16.18 16 10 C 0.50 16.22 7.62 87.24 0.66 16.89 16 11 O -0.52 -20.09 14.19 -3.32 -0.05 -20.14 16 12 N -0.63 -19.23 5.32 -304.89 -1.62 -20.85 16 13 C 0.18 6.47 6.27 38.20 0.24 6.71 16 14 C -0.20 -6.02 9.96 22.43 0.22 -5.79 16 15 C -0.05 -1.46 10.03 22.23 0.22 -1.24 16 16 C -0.25 -10.64 9.13 22.42 0.20 -10.44 16 17 C 0.13 6.74 6.64 22.56 0.15 6.89 16 18 O -0.23 -14.48 9.75 -22.69 -0.22 -14.70 16 19 C -0.41 -24.41 9.44 67.92 0.64 -23.77 16 20 H 0.11 5.65 5.29 -2.91 -0.02 5.64 16 21 C -0.03 -1.45 5.49 84.83 0.47 -0.99 16 22 N -0.92 -57.92 13.67 21.61 0.30 -57.63 16 23 Si 1.02 43.13 29.55 68.60 2.03 45.16 16 24 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.25 -9.57 7.11 99.48 0.71 -8.87 16 27 C -0.21 -9.88 8.59 22.52 0.19 -9.69 16 28 C 0.49 11.53 7.66 87.90 0.67 12.20 16 29 O -0.57 -20.07 17.59 -3.03 -0.05 -20.12 16 30 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.06 0.97 7.93 -2.39 -0.02 0.95 16 32 H 0.11 0.57 8.14 -2.38 -0.02 0.56 16 33 H 0.12 -0.03 8.14 -2.39 -0.02 -0.05 16 34 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 36 H 0.13 0.17 8.07 -2.39 -0.02 0.15 16 37 H 0.43 7.62 8.10 -92.71 -0.75 6.87 16 38 H 0.43 10.57 8.30 -92.71 -0.77 9.80 16 39 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 40 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 41 H 0.13 5.44 5.71 -2.91 -0.02 5.42 16 42 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 43 H 0.10 5.26 6.45 -2.91 -0.02 5.24 16 Total: -1.00 -92.61 375.59 1.60 -91.01 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: -0.42 Total: 30.76 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 6.77 Total: 11.19 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -6.40 Total: -106.97 kcal Atomic # 8 Polarization: -70.77 SS G_CDS: -0.37 Total: -71.15 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -92.61 1.60 -91.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321293517.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.108 kcal (2) G-P(sol) polarization free energy of solvation -92.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds