Wall clock time and date at job start Wed Apr 1 2020 05:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35956 * 117.00106 * 2 1 4 4 C 1.38304 * 120.06837 * 359.97438 * 3 2 1 5 5 C 1.38691 * 120.62577 * 180.02562 * 4 3 2 6 6 C 1.37738 * 120.31987 * 0.02562 * 5 4 3 7 7 C 1.39509 * 119.70537 * 359.96137 * 6 5 4 8 8 C 1.46789 * 134.30583 * 180.02562 * 7 6 5 9 9 C 1.34000 * 106.19204 * 180.02562 * 8 7 6 10 10 C 1.50706 * 124.93108 * 179.97438 * 9 8 7 11 11 N 1.46500 * 109.46949 * 90.00152 * 10 9 8 12 12 C 1.34769 * 120.00237 * 180.02562 * 11 10 9 13 13 O 1.21587 * 120.00170 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00179 * 180.02562 * 12 11 10 15 15 C 1.46509 * 120.00229 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47377 * 179.97438 * 15 14 12 17 17 O 1.21296 * 119.99471 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99917 * 179.97438 * 16 15 14 19 19 C 1.37094 * 119.99823 * 180.02562 * 18 16 15 20 20 H 1.08001 * 119.99873 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99884 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99864 * 179.97438 * 21 19 18 23 23 Si 1.86793 * 120.00080 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.47156 * 89.99797 * 23 21 19 25 25 H 1.48493 * 109.47127 * 209.99806 * 23 21 19 26 26 H 1.48498 * 109.47123 * 330.00402 * 23 21 19 27 27 O 1.34420 * 110.13461 * 0.26198 * 9 8 7 28 28 C 1.34897 * 110.87399 * 359.54991 * 27 9 8 29 29 H 1.09007 * 109.46973 * 59.99690 * 1 2 3 30 30 H 1.08993 * 109.47456 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47034 * 300.00610 * 1 2 3 32 32 H 1.08004 * 119.69108 * 0.03966 * 4 3 2 33 33 H 1.07999 * 119.84307 * 179.97438 * 5 4 3 34 34 H 1.08007 * 120.14892 * 180.02562 * 6 5 4 35 35 H 1.08002 * 126.90126 * 0.03750 * 8 7 6 36 36 H 1.09000 * 109.47318 * 209.99539 * 10 9 8 37 37 H 1.09000 * 109.47161 * 330.00169 * 10 9 8 38 38 H 0.97010 * 119.99909 * 359.97438 * 11 10 9 39 39 H 0.97004 * 120.00422 * 359.97438 * 14 12 11 40 40 H 1.09000 * 109.46533 * 300.00054 * 15 14 12 41 41 H 1.08996 * 109.47040 * 59.99304 * 15 14 12 42 42 H 0.96993 * 120.00013 * 0.02562 * 18 16 15 43 43 H 0.96993 * 120.00053 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2944 2.3722 -0.0005 5 6 1.9120 3.6140 -0.0011 6 6 3.2863 3.7071 -0.0016 7 6 4.0579 2.5449 -0.0008 8 6 5.5002 2.2717 -0.0006 9 6 5.6279 0.9378 -0.0002 10 6 6.9400 0.1965 -0.0005 11 7 7.3656 -0.0433 1.3807 12 6 8.5195 -0.6945 1.6269 13 8 9.2073 -1.0834 0.7027 14 7 8.9108 -0.9156 2.8975 15 6 10.1650 -1.6240 3.1651 16 6 10.3693 -1.7388 4.6538 17 8 9.5479 -1.2749 5.4162 18 7 11.4643 -2.3578 5.1379 19 6 11.6499 -2.4627 6.4921 20 1 10.9189 -2.0489 7.1710 21 6 12.7791 -3.1004 6.9912 22 7 12.9573 -3.2005 8.2894 23 14 14.0437 -3.8153 5.8170 24 1 15.0675 -2.7857 5.5053 25 1 14.6983 -4.9887 6.4491 26 1 13.3708 -4.2395 4.5631 27 8 4.4157 0.3569 -0.0060 28 6 3.4375 1.2859 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.2161 2.3112 -0.0003 33 1 1.3126 4.5124 -0.0019 34 1 3.7644 4.6756 -0.0016 35 1 6.2981 2.9996 -0.0005 36 1 6.8185 -0.7572 -0.5139 37 1 7.6940 0.7926 -0.5147 38 1 6.8171 0.2673 2.1181 39 1 8.3620 -0.6057 3.6349 40 1 10.1200 -2.6207 2.7262 41 1 10.9954 -1.0709 2.7263 42 1 12.1210 -2.7290 4.5281 43 1 13.7453 -3.6459 8.6378 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322562752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:56:44 Heat of formation + Delta-G solvation = -59.270336 kcal Electronic energy + Delta-G solvation = -28276.246229 eV Core-core repulsion = 23903.163106 eV Total energy + Delta-G solvation = -4373.083124 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.88130 -40.05940 -39.82474 -38.40779 -37.31025 -35.31031 -34.47501 -33.74565 -32.73573 -31.79823 -30.86320 -30.07753 -28.22241 -27.62331 -26.05297 -24.17321 -23.34957 -21.94500 -21.48586 -20.86778 -19.65607 -18.92590 -18.53920 -18.19353 -17.89721 -16.98244 -16.62228 -16.17951 -15.81344 -15.72525 -15.66583 -15.48415 -15.03209 -14.93306 -14.47803 -14.24924 -14.05677 -13.78674 -13.58303 -13.31190 -13.13034 -12.91212 -12.75710 -12.50969 -12.46432 -12.16116 -12.07075 -11.79609 -11.77092 -11.71153 -11.22964 -10.63594 -10.35655 -10.10622 -10.05397 -9.69300 -9.36089 -8.98388 -8.76600 -8.75542 -8.29950 -8.26061 -6.40252 -3.92857 0.43362 0.90932 1.77540 2.19774 2.73343 2.85568 3.00483 3.05149 3.13364 3.25191 3.25456 3.57829 3.86333 4.04160 4.27959 4.33778 4.34312 4.57008 4.60865 4.68465 4.70828 4.74954 4.83470 4.94506 5.03237 5.07616 5.14800 5.26219 5.33441 5.64699 5.66682 5.70919 5.79387 5.85129 5.91045 6.00425 6.17671 6.23525 6.52496 6.59732 6.92321 6.97053 7.45406 8.00369 8.08901 8.44633 8.64330 8.82248 9.30357 9.64029 10.71914 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.020797 B = 0.001636 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.046340 B =17108.230283 C =17426.240212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.313 6.313 3 C 0.145 3.855 4 C -0.191 4.191 5 C -0.095 4.095 6 C -0.108 4.108 7 C -0.094 4.094 8 C -0.184 4.184 9 C 0.025 3.975 10 C 0.218 3.782 11 N -0.748 5.748 12 C 0.710 3.290 13 O -0.596 6.596 14 N -0.722 5.722 15 C 0.126 3.874 16 C 0.438 3.562 17 O -0.579 6.579 18 N -0.576 5.576 19 C -0.310 4.310 20 H 0.121 0.879 21 C 0.045 3.955 22 N -0.874 5.874 23 Si 0.879 3.121 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.266 1.266 27 O -0.177 6.177 28 C 0.031 3.969 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.140 0.860 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.166 0.834 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.402 0.598 39 H 0.409 0.591 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.375 0.625 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.557 12.209 -20.694 32.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.226 6.226 3 C 0.099 3.901 4 C -0.210 4.210 5 C -0.114 4.114 6 C -0.126 4.126 7 C -0.095 4.095 8 C -0.204 4.204 9 C -0.023 4.023 10 C 0.094 3.906 11 N -0.405 5.405 12 C 0.409 3.591 13 O -0.475 6.475 14 N -0.380 5.380 15 C -0.003 4.003 16 C 0.224 3.776 17 O -0.464 6.464 18 N -0.214 5.214 19 C -0.439 4.439 20 H 0.139 0.861 21 C -0.159 4.159 22 N -0.513 5.513 23 Si 0.705 3.295 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.192 1.192 27 O -0.078 6.078 28 C -0.017 4.017 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.077 0.923 32 H 0.158 0.842 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.183 0.817 36 H 0.107 0.893 37 H 0.122 0.878 38 H 0.236 0.764 39 H 0.247 0.753 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.208 0.792 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -22.273 11.560 -20.819 32.606 hybrid contribution 0.300 -0.110 -0.021 0.320 sum -21.973 11.450 -20.840 32.376 Atomic orbital electron populations 1.23126 0.77823 1.04429 1.01482 1.86183 1.21772 1.26033 1.88613 1.17733 0.86719 0.85663 0.99948 1.20965 0.99974 0.91072 1.08984 1.20799 0.94147 0.97016 0.99407 1.20467 0.93026 0.96908 1.02182 1.19751 0.93089 0.92825 1.03832 1.22379 0.94555 0.95046 1.08399 1.22318 0.85284 0.92136 1.02597 1.19517 0.86674 1.00470 0.83952 1.45014 1.24221 1.63393 1.07909 1.15711 0.80966 0.78861 0.83519 1.90921 1.55643 1.57465 1.43432 1.44735 1.25340 1.61658 1.06248 1.20826 0.86285 0.97920 0.95218 1.19654 0.84220 0.84774 0.88955 1.90540 1.44799 1.52240 1.58775 1.42106 1.20208 1.50919 1.08136 1.19440 1.08260 1.35797 0.80362 0.86096 1.25068 0.97551 0.97261 0.96048 1.69617 1.28573 1.41996 1.11154 0.86664 0.82085 0.79915 0.80796 1.19395 1.20002 1.19180 1.84056 1.12975 1.34994 1.75750 1.18693 0.87516 0.87276 1.08188 0.92413 0.87877 0.92327 0.84231 0.84886 0.85042 0.81689 0.89295 0.87767 0.76412 0.75332 0.89765 0.89745 0.79214 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -3.12 10.50 -19.60 -0.21 -3.33 16 3 C 0.15 1.47 6.70 -39.15 -0.26 1.20 16 4 C -0.19 -1.40 9.03 -39.39 -0.36 -1.76 16 5 C -0.10 -0.64 10.03 -39.60 -0.40 -1.03 16 6 C -0.11 -0.84 10.10 -39.29 -0.40 -1.23 16 7 C -0.09 -0.93 6.39 -105.17 -0.67 -1.60 16 8 C -0.18 -1.65 11.01 -37.62 -0.41 -2.07 16 9 C 0.03 0.25 6.60 -35.80 -0.24 0.02 16 10 C 0.22 2.17 6.17 -5.19 -0.03 2.14 16 11 N -0.75 -8.64 5.55 -66.41 -0.37 -9.01 16 12 C 0.71 10.79 8.57 -86.93 -0.74 10.05 16 13 O -0.60 -10.78 16.34 5.29 0.09 -10.69 16 14 N -0.72 -11.49 5.53 -66.41 -0.37 -11.86 16 15 C 0.13 2.18 6.15 -5.19 -0.03 2.14 16 16 C 0.44 9.60 7.85 -10.99 -0.09 9.51 16 17 O -0.58 -14.60 15.24 5.54 0.08 -14.52 16 18 N -0.58 -13.36 5.09 -10.96 -0.06 -13.42 16 19 C -0.31 -8.54 10.16 -14.93 -0.15 -8.70 16 20 H 0.12 3.79 7.39 -52.49 -0.39 3.41 16 21 C 0.04 1.20 5.50 -17.47 -0.10 1.11 16 22 N -0.87 -24.97 13.96 55.50 0.77 -24.20 16 23 Si 0.88 19.00 27.74 -169.99 -4.71 14.28 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 26 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 27 O -0.18 -2.17 10.58 3.73 0.04 -2.13 16 28 C 0.03 0.36 7.35 -38.38 -0.28 0.08 16 29 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 32 H 0.14 0.63 6.26 -52.48 -0.33 0.31 16 33 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 34 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 35 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.40 4.06 8.48 -40.82 -0.35 3.71 16 39 H 0.41 6.42 7.45 -40.82 -0.30 6.11 16 40 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 43 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 376.53 15.07 5.67 5.67 Total: -1.00 -35.38 376.53 -7.17 -42.55 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -4.95 Total: 15.66 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: -3.17 Total: 10.99 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -0.02 Total: -58.49 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: 0.00 Total: -30.67 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.71 Total: 14.28 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.38 -7.17 -42.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322562752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.723 kcal (2) G-P(sol) polarization free energy of solvation -35.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds