Wall clock time and date at job start Wed Apr 1 2020 05:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35956 * 117.00106 * 2 1 4 4 C 1.38304 * 120.06837 * 359.97438 * 3 2 1 5 5 C 1.38691 * 120.62577 * 180.02562 * 4 3 2 6 6 C 1.37738 * 120.31987 * 0.02562 * 5 4 3 7 7 C 1.39509 * 119.70537 * 359.96137 * 6 5 4 8 8 C 1.46789 * 134.30583 * 180.02562 * 7 6 5 9 9 C 1.34000 * 106.19204 * 180.02562 * 8 7 6 10 10 C 1.50706 * 124.93108 * 179.97438 * 9 8 7 11 11 N 1.46500 * 109.46949 * 90.00152 * 10 9 8 12 12 C 1.34769 * 120.00237 * 180.02562 * 11 10 9 13 13 O 1.21587 * 120.00170 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00179 * 180.02562 * 12 11 10 15 15 C 1.46509 * 120.00229 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47377 * 179.97438 * 15 14 12 17 17 O 1.21296 * 119.99471 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99917 * 179.97438 * 16 15 14 19 19 C 1.37094 * 119.99823 * 180.02562 * 18 16 15 20 20 H 1.08001 * 119.99873 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99884 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99864 * 179.97438 * 21 19 18 23 23 Si 1.86793 * 120.00080 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.47156 * 89.99797 * 23 21 19 25 25 H 1.48493 * 109.47127 * 209.99806 * 23 21 19 26 26 H 1.48498 * 109.47123 * 330.00402 * 23 21 19 27 27 O 1.34420 * 110.13461 * 0.26198 * 9 8 7 28 28 C 1.34897 * 110.87399 * 359.54991 * 27 9 8 29 29 H 1.09007 * 109.46973 * 59.99690 * 1 2 3 30 30 H 1.08993 * 109.47456 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47034 * 300.00610 * 1 2 3 32 32 H 1.08004 * 119.69108 * 0.03966 * 4 3 2 33 33 H 1.07999 * 119.84307 * 179.97438 * 5 4 3 34 34 H 1.08007 * 120.14892 * 180.02562 * 6 5 4 35 35 H 1.08002 * 126.90126 * 0.03750 * 8 7 6 36 36 H 1.09000 * 109.47318 * 209.99539 * 10 9 8 37 37 H 1.09000 * 109.47161 * 330.00169 * 10 9 8 38 38 H 0.97010 * 119.99909 * 359.97438 * 11 10 9 39 39 H 0.97004 * 120.00422 * 359.97438 * 14 12 11 40 40 H 1.09000 * 109.46533 * 300.00054 * 15 14 12 41 41 H 1.08996 * 109.47040 * 59.99304 * 15 14 12 42 42 H 0.96993 * 120.00013 * 0.02562 * 18 16 15 43 43 H 0.96993 * 120.00053 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2944 2.3722 -0.0005 5 6 1.9120 3.6140 -0.0011 6 6 3.2863 3.7071 -0.0016 7 6 4.0579 2.5449 -0.0008 8 6 5.5002 2.2717 -0.0006 9 6 5.6279 0.9378 -0.0002 10 6 6.9400 0.1965 -0.0005 11 7 7.3656 -0.0433 1.3807 12 6 8.5195 -0.6945 1.6269 13 8 9.2073 -1.0834 0.7027 14 7 8.9108 -0.9156 2.8975 15 6 10.1650 -1.6240 3.1651 16 6 10.3693 -1.7388 4.6538 17 8 9.5479 -1.2749 5.4162 18 7 11.4643 -2.3578 5.1379 19 6 11.6499 -2.4627 6.4921 20 1 10.9189 -2.0489 7.1710 21 6 12.7791 -3.1004 6.9912 22 7 12.9573 -3.2005 8.2894 23 14 14.0437 -3.8153 5.8170 24 1 15.0675 -2.7857 5.5053 25 1 14.6983 -4.9887 6.4491 26 1 13.3708 -4.2395 4.5631 27 8 4.4157 0.3569 -0.0060 28 6 3.4375 1.2859 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.2161 2.3112 -0.0003 33 1 1.3126 4.5124 -0.0019 34 1 3.7644 4.6756 -0.0016 35 1 6.2981 2.9996 -0.0005 36 1 6.8185 -0.7572 -0.5139 37 1 7.6940 0.7926 -0.5147 38 1 6.8171 0.2673 2.1181 39 1 8.3620 -0.6057 3.6349 40 1 10.1200 -2.6207 2.7262 41 1 10.9954 -1.0709 2.7263 42 1 12.1210 -2.7290 4.5281 43 1 13.7453 -3.6459 8.6378 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322562752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:56:43 Heat of formation + Delta-G solvation = -87.320709 kcal Electronic energy + Delta-G solvation = -28277.462585 eV Core-core repulsion = 23903.163106 eV Total energy + Delta-G solvation = -4374.299479 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.58373 -41.25649 -40.52703 -40.13392 -37.91250 -36.43910 -36.12079 -35.30245 -33.83124 -33.46366 -31.56680 -30.78479 -29.38893 -28.33174 -27.06175 -25.87098 -24.00548 -22.57874 -22.21473 -22.03159 -21.45975 -20.59560 -19.73506 -19.05992 -18.56129 -17.92253 -17.51670 -17.37322 -17.01830 -16.85819 -16.70805 -16.36399 -16.20432 -15.87521 -15.77262 -15.68393 -15.07925 -14.90199 -14.50059 -14.39087 -14.30919 -14.12155 -13.98130 -13.63601 -13.45187 -13.29807 -13.05110 -12.94453 -12.43708 -12.39647 -12.26443 -12.22619 -11.99286 -11.57011 -11.56492 -10.82480 -10.64643 -10.50317 -10.31537 -9.91655 -9.66365 -8.88257 -8.44720 -6.06757 -0.22380 0.28361 1.02822 1.32594 1.35280 1.45179 1.50187 1.79407 1.80088 2.06809 2.21663 2.22372 2.64493 2.80629 3.11702 3.16848 3.28988 3.72820 3.84939 3.98955 4.00544 4.08747 4.23762 4.30479 4.36587 4.37173 4.40221 4.42561 4.47226 4.54880 4.69258 4.72560 5.08237 5.11374 5.23934 5.27984 5.33283 5.42621 5.49530 5.64298 5.83613 5.88221 5.89212 6.37203 6.49823 6.79070 6.91912 7.29078 7.44676 7.79556 8.71731 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.020797 B = 0.001636 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.046340 B =17108.230283 C =17426.240212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.344 6.344 3 C 0.119 3.881 4 C -0.183 4.183 5 C -0.092 4.092 6 C -0.112 4.112 7 C -0.112 4.112 8 C -0.172 4.172 9 C 0.009 3.991 10 C 0.222 3.778 11 N -0.735 5.735 12 C 0.713 3.287 13 O -0.622 6.622 14 N -0.726 5.726 15 C 0.138 3.862 16 C 0.445 3.555 17 O -0.616 6.616 18 N -0.577 5.577 19 C -0.332 4.332 20 H 0.063 0.937 21 C -0.009 4.009 22 N -0.926 5.926 23 Si 0.960 3.040 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.232 1.232 27 O -0.205 6.205 28 C -0.004 4.004 29 H 0.074 0.926 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.168 0.832 33 H 0.168 0.832 34 H 0.155 0.845 35 H 0.190 0.810 36 H 0.081 0.919 37 H 0.120 0.880 38 H 0.409 0.591 39 H 0.410 0.590 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.392 0.608 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.854 13.380 -23.366 35.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.258 6.258 3 C 0.074 3.926 4 C -0.202 4.202 5 C -0.110 4.110 6 C -0.130 4.130 7 C -0.113 4.113 8 C -0.191 4.191 9 C -0.039 4.039 10 C 0.099 3.901 11 N -0.392 5.392 12 C 0.412 3.588 13 O -0.503 6.503 14 N -0.384 5.384 15 C 0.010 3.990 16 C 0.232 3.768 17 O -0.502 6.502 18 N -0.217 5.217 19 C -0.461 4.461 20 H 0.081 0.919 21 C -0.209 4.209 22 N -0.566 5.566 23 Si 0.779 3.221 24 H -0.180 1.180 25 H -0.199 1.199 26 H -0.155 1.155 27 O -0.107 6.107 28 C -0.052 4.052 29 H 0.092 0.908 30 H 0.132 0.868 31 H 0.089 0.911 32 H 0.185 0.815 33 H 0.186 0.814 34 H 0.173 0.827 35 H 0.207 0.793 36 H 0.100 0.900 37 H 0.138 0.862 38 H 0.244 0.756 39 H 0.247 0.753 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.228 0.772 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -22.619 12.758 -23.515 35.034 hybrid contribution 0.141 -0.350 0.846 0.926 sum -22.478 12.409 -22.669 34.251 Atomic orbital electron populations 1.23413 0.75690 1.05725 1.02853 1.86134 1.24161 1.26620 1.88911 1.18111 0.86688 0.86616 1.01185 1.21387 1.01298 0.90440 1.07035 1.21271 0.94115 0.97971 0.97614 1.20864 0.93640 0.97153 1.01353 1.20086 0.93556 0.93116 1.04528 1.22700 0.94948 0.94947 1.06542 1.22308 0.84753 0.92561 1.04256 1.19578 0.87211 1.00511 0.82838 1.44959 1.23031 1.62114 1.09053 1.15713 0.81501 0.78839 0.82706 1.90902 1.56740 1.58734 1.43973 1.44712 1.25082 1.61877 1.06680 1.20728 0.87715 0.99580 0.90981 1.20538 0.82824 0.82461 0.90928 1.90530 1.45914 1.53119 1.60606 1.41903 1.21309 1.51848 1.06664 1.19028 1.08021 1.37168 0.81840 0.91925 1.26079 0.99687 0.96974 0.98120 1.69781 1.29813 1.43144 1.13869 0.85433 0.78536 0.78972 0.79112 1.18010 1.19918 1.15515 1.83996 1.13844 1.36177 1.76688 1.19233 0.88259 0.87932 1.09747 0.90785 0.86814 0.91053 0.81459 0.81445 0.82701 0.79328 0.90025 0.86186 0.75551 0.75298 0.87947 0.87538 0.77158 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -7.01 10.50 -93.06 -0.98 -7.98 16 3 C 0.12 2.41 6.70 22.55 0.15 2.56 16 4 C -0.18 -2.33 9.03 22.39 0.20 -2.13 16 5 C -0.09 -0.96 10.03 22.26 0.22 -0.74 16 6 C -0.11 -1.50 10.10 22.46 0.23 -1.27 16 7 C -0.11 -2.14 6.39 -20.22 -0.13 -2.27 16 8 C -0.17 -2.92 11.01 23.54 0.26 -2.67 16 9 C 0.01 0.18 6.60 24.72 0.16 0.34 16 10 C 0.22 4.31 6.17 85.63 0.53 4.84 16 11 N -0.73 -16.41 5.55 -482.30 -2.68 -19.09 16 12 C 0.71 20.76 8.57 179.06 1.53 22.29 16 13 O -0.62 -21.49 16.34 -3.99 -0.07 -21.56 16 14 N -0.73 -22.25 5.53 -482.29 -2.67 -24.92 16 15 C 0.14 4.50 6.15 85.63 0.53 5.03 16 16 C 0.44 19.36 7.85 87.66 0.69 20.05 16 17 O -0.62 -31.80 15.24 -3.08 -0.05 -31.85 16 18 N -0.58 -26.48 5.09 -306.98 -1.56 -28.05 16 19 C -0.33 -18.85 10.16 84.04 0.85 -18.00 16 20 H 0.06 4.21 7.39 -2.91 -0.02 4.19 16 21 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 22 N -0.93 -54.55 13.96 21.66 0.30 -54.24 16 23 Si 0.96 38.10 27.74 68.60 1.90 40.00 16 24 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 25 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 26 H -0.23 -7.84 6.52 99.48 0.65 -7.20 16 27 O -0.20 -5.26 10.58 -9.55 -0.10 -5.37 16 28 C 0.00 -0.11 7.35 23.05 0.17 0.06 16 29 H 0.07 0.41 7.66 -2.38 -0.02 0.39 16 30 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.44 7.66 -2.39 -0.02 0.43 16 32 H 0.17 1.03 6.26 -2.91 -0.02 1.02 16 33 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 34 H 0.16 1.25 8.06 -2.91 -0.02 1.22 16 35 H 0.19 2.10 8.06 -2.91 -0.02 2.08 16 36 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.41 8.07 8.48 -92.70 -0.79 7.28 16 39 H 0.41 12.68 7.45 -92.71 -0.69 11.99 16 40 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 41 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 42 H 0.39 15.06 5.76 -92.71 -0.53 14.52 16 43 H 0.28 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -81.62 376.53 0.12 -81.50 By element: Atomic # 1 Polarization: 43.16 SS G_CDS: -0.96 Total: 42.20 kcal Atomic # 6 Polarization: 22.39 SS G_CDS: 6.98 Total: 29.36 kcal Atomic # 7 Polarization: -119.70 SS G_CDS: -6.61 Total: -126.30 kcal Atomic # 8 Polarization: -65.57 SS G_CDS: -1.19 Total: -66.76 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 1.90 Total: 40.00 kcal Total: -81.62 0.12 -81.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322562752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.821 kcal (2) G-P(sol) polarization free energy of solvation -81.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds