Wall clock time and date at job start Wed Apr 1 2020 06:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00169 * 2 1 4 4 H 1.48501 * 109.47511 * 270.00753 * 3 2 1 5 5 H 1.48508 * 109.47238 * 30.00771 * 3 2 1 6 6 H 1.48502 * 109.47387 * 150.00335 * 3 2 1 7 7 C 1.37875 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00213 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00009 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47399 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47533 * 180.02562 * 10 9 7 12 12 C 1.34772 * 120.00303 * 180.02562 * 11 10 9 13 13 O 1.21354 * 120.00155 * 359.97438 * 12 11 10 14 14 C 1.49450 * 120.00063 * 179.97438 * 12 11 10 15 15 O 1.21349 * 120.00352 * 359.97438 * 14 12 11 16 16 N 1.34781 * 119.99851 * 179.97438 * 14 12 11 17 17 C 1.46506 * 119.99719 * 179.97438 * 16 14 12 18 18 C 1.53002 * 109.46762 * 179.97438 * 17 16 14 19 19 C 1.50700 * 109.47000 * 179.97438 * 18 17 16 20 20 C 1.34240 * 126.49629 * 265.03111 * 19 18 17 21 21 N 1.36821 * 109.93121 * 179.97438 * 20 19 18 22 22 H 0.97001 * 125.06715 * 179.97438 * 21 20 19 23 23 C 1.37820 * 109.85832 * 0.26532 * 21 20 19 24 24 C 1.39092 * 133.39043 * 179.73333 * 23 21 20 25 25 C 1.37720 * 119.95277 * 179.97438 * 24 23 21 26 26 C 1.39028 * 120.64444 * 0.02562 * 25 24 23 27 27 F 1.35101 * 119.83003 * 179.97438 * 26 25 24 28 28 C 1.37799 * 120.33635 * 359.53762 * 26 25 24 29 29 C 1.39679 * 119.62589 * 0.69494 * 28 26 25 30 30 H 0.97002 * 119.99870 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.46912 * 59.99993 * 9 7 2 32 32 H 1.09005 * 109.47381 * 300.00403 * 9 7 2 33 33 H 1.08996 * 109.47472 * 60.00090 * 10 9 7 34 34 H 1.09005 * 109.47051 * 300.00443 * 10 9 7 35 35 H 0.96997 * 119.99792 * 359.97438 * 11 10 9 36 36 H 0.96997 * 120.00117 * 359.97438 * 16 14 12 37 37 H 1.08992 * 109.47268 * 59.99764 * 17 16 14 38 38 H 1.08992 * 109.46955 * 299.99449 * 17 16 14 39 39 H 1.09001 * 109.46756 * 60.00049 * 18 17 16 40 40 H 1.08992 * 109.47357 * 299.99718 * 18 17 16 41 41 H 1.07993 * 125.03730 * 359.97438 * 20 19 18 42 42 H 1.08001 * 120.02885 * 359.97438 * 24 23 21 43 43 H 1.07999 * 119.67434 * 179.97438 * 25 24 23 44 44 H 1.08004 * 120.18394 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0023 11 7 5.4865 -2.6367 -0.0022 12 6 6.1603 -3.8038 -0.0037 13 8 5.5536 -4.8548 -0.0046 14 6 7.6548 -3.8039 -0.0042 15 8 8.2616 -2.7530 -0.0038 16 7 8.3287 -4.9711 -0.0051 17 6 9.7937 -4.9711 -0.0062 18 6 10.3036 -6.4137 -0.0065 19 6 11.8106 -6.4137 -0.0083 20 6 12.6078 -6.5075 -1.0843 21 7 13.9197 -6.4731 -0.6972 22 1 14.6795 -6.5256 -1.2979 23 6 14.0005 -6.3592 0.6739 24 6 15.0655 -6.2881 1.5657 25 6 14.8245 -6.1744 2.9169 26 6 13.5228 -6.1301 3.4033 27 9 13.3054 -6.0188 4.7320 28 6 12.4535 -6.1900 2.5363 29 6 12.6832 -6.3104 1.1638 30 1 -0.4850 0.8401 0.0004 31 1 3.8752 -0.6805 0.8889 32 1 3.8746 -0.6800 -0.8911 33 1 3.6579 -3.1498 -0.8924 34 1 3.6584 -3.1510 0.8875 35 1 5.9715 -1.7967 -0.0019 36 1 7.8437 -5.8111 -0.0051 37 1 10.1577 -4.4576 0.8836 38 1 10.1563 -4.4571 -0.8963 39 1 9.9396 -6.9275 -0.8962 40 1 9.9410 -6.9274 0.8837 41 1 12.2645 -6.5968 -2.1043 42 1 16.0807 -6.3220 1.1989 43 1 15.6548 -6.1199 3.6054 44 1 11.4433 -6.1558 2.9169 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323063297.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:31:51 Heat of formation + Delta-G solvation = -69.099463 kcal Electronic energy + Delta-G solvation = -27918.604689 eV Core-core repulsion = 23557.468132 eV Total energy + Delta-G solvation = -4361.136557 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.143 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.10393 -41.80589 -40.43565 -38.39147 -37.15509 -36.05413 -35.11289 -33.31790 -32.77314 -30.97384 -30.27371 -29.41459 -28.49801 -25.98216 -24.26424 -23.57750 -22.50465 -22.40801 -20.89026 -20.51857 -19.76455 -18.58399 -18.13802 -17.65332 -17.05018 -16.73901 -16.53240 -16.10540 -15.90886 -15.68095 -15.48575 -15.06142 -14.91481 -14.62973 -14.40090 -14.17627 -14.09357 -13.62036 -13.52283 -13.37439 -13.21197 -12.91057 -12.83728 -12.60793 -12.46168 -11.76865 -11.73436 -11.58359 -11.47840 -11.24334 -11.22591 -10.43427 -10.29634 -10.18017 -9.95186 -9.45518 -9.37635 -9.29733 -8.76049 -8.65809 -8.60493 -8.17749 -6.11753 -4.12396 0.48296 0.93654 1.57001 2.04363 2.48817 2.60191 3.22962 3.27218 3.35290 3.37410 3.38409 3.83078 3.84778 4.12220 4.28885 4.38477 4.44891 4.60702 4.63988 4.68446 4.75517 4.83819 5.01340 5.10272 5.21434 5.28429 5.30614 5.42206 5.61668 5.66193 5.75344 5.83073 5.98037 6.07636 6.11462 6.16491 6.19294 6.48278 6.52698 6.57847 6.94151 6.96312 7.11462 7.19503 7.58611 7.63412 7.87724 8.22867 8.42508 8.91549 9.48293 11.00973 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.018587 B = 0.001593 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.092014 B =17569.403395 C =18100.215644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.127 3.873 11 N -0.691 5.691 12 C 0.498 3.502 13 O -0.530 6.530 14 C 0.508 3.492 15 O -0.521 6.521 16 N -0.706 5.706 17 C 0.122 3.878 18 C -0.056 4.056 19 C -0.168 4.168 20 C 0.070 3.930 21 N -0.592 5.592 22 H 0.419 0.581 23 C 0.085 3.915 24 C -0.099 4.099 25 C -0.131 4.131 26 C 0.073 3.927 27 F -0.141 7.141 28 C -0.105 4.105 29 C -0.074 4.074 30 H 0.265 0.735 31 H 0.025 0.975 32 H 0.020 0.980 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.409 0.591 36 H 0.413 0.587 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.175 0.825 42 H 0.130 0.870 43 H 0.138 0.862 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.650 -16.415 -0.701 38.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.095 0.905 9 C -0.062 4.062 10 C 0.005 3.995 11 N -0.342 5.342 12 C 0.278 3.722 13 O -0.407 6.407 14 C 0.289 3.711 15 O -0.396 6.396 16 N -0.360 5.360 17 C -0.001 4.001 18 C -0.095 4.095 19 C -0.176 4.176 20 C -0.057 4.057 21 N -0.195 5.195 22 H 0.256 0.744 23 C -0.022 4.022 24 C -0.120 4.120 25 C -0.151 4.151 26 C 0.052 3.948 27 F -0.120 7.120 28 C -0.124 4.124 29 C -0.079 4.079 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.038 0.962 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.244 0.756 36 H 0.249 0.751 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.193 0.807 42 H 0.148 0.852 43 H 0.156 0.844 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 34.545 -16.272 -0.755 38.193 hybrid contribution 0.727 0.953 -0.082 1.201 sum 35.272 -15.318 -0.837 38.464 Atomic orbital electron populations 1.69901 1.06279 1.27107 1.50253 1.24984 0.94769 0.99162 0.94263 0.86770 0.80361 0.83495 0.78607 1.20166 1.21230 1.18940 1.20878 0.88446 0.94952 1.51962 0.90532 1.19829 0.98100 0.91012 0.97246 1.21712 0.74755 1.00817 1.02176 1.46208 1.09511 1.08063 1.70432 1.19978 0.87732 0.85221 0.79273 1.90744 1.69696 1.31000 1.49276 1.20413 0.88963 0.84303 0.77465 1.90758 1.70070 1.31097 1.47721 1.45764 1.07413 1.09083 1.73766 1.21465 0.78381 0.97100 1.03161 1.20084 0.89741 0.95777 1.03864 1.19891 0.94128 1.12843 0.90747 1.21742 0.82022 1.02492 0.99405 1.41748 1.07776 1.64623 1.05324 0.74386 1.18241 0.95285 1.04893 0.83735 1.19828 0.97086 1.03859 0.91212 1.20781 0.95603 1.03322 0.95419 1.17319 0.93727 1.06174 0.77557 1.91503 1.95637 1.93846 1.31009 1.20460 0.98916 1.01821 0.91253 1.18762 0.92090 1.04679 0.92407 0.92515 0.95697 0.96158 0.91256 0.91229 0.75572 0.75076 0.90895 0.90938 0.89969 0.90035 0.80738 0.85179 0.84398 0.84566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 7 C -0.52 -14.55 9.66 -34.44 -0.33 -14.88 16 8 H 0.08 2.28 7.99 -52.49 -0.42 1.87 16 9 C -0.02 -0.55 4.16 -27.89 -0.12 -0.67 16 10 C 0.13 2.54 5.61 -4.05 -0.02 2.52 16 11 N -0.69 -11.89 5.55 -60.73 -0.34 -12.23 16 12 C 0.50 8.16 7.89 -11.59 -0.09 8.07 16 13 O -0.53 -9.61 16.48 5.49 0.09 -9.51 16 14 C 0.51 7.19 7.89 -11.58 -0.09 7.10 16 15 O -0.52 -8.47 16.48 5.50 0.09 -8.38 16 16 N -0.71 -7.36 5.55 -60.73 -0.34 -7.70 16 17 C 0.12 1.04 5.66 -4.04 -0.02 1.02 16 18 C -0.06 -0.33 5.86 -27.88 -0.16 -0.50 16 19 C -0.17 -1.12 5.57 -102.71 -0.57 -1.69 16 20 C 0.07 0.33 11.73 -16.73 -0.20 0.13 16 21 N -0.59 -2.62 6.08 -10.64 -0.06 -2.68 16 22 H 0.42 0.58 8.96 -40.82 -0.37 0.21 16 23 C 0.09 0.58 7.27 -83.95 -0.61 -0.03 16 24 C -0.10 -0.58 10.06 -39.45 -0.40 -0.98 16 25 C -0.13 -0.90 9.99 -39.48 -0.39 -1.29 16 26 C 0.07 0.64 7.29 -39.45 -0.29 0.35 16 27 F -0.14 -1.42 17.26 2.25 0.04 -1.38 16 28 C -0.11 -0.91 10.08 -39.20 -0.39 -1.31 16 29 C -0.07 -0.61 6.35 -105.14 -0.67 -1.27 16 30 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 32 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 33 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.41 6.55 7.94 -40.82 -0.32 6.23 16 36 H 0.41 3.73 7.94 -40.82 -0.32 3.41 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.18 0.30 8.06 -52.49 -0.42 -0.12 16 42 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 43 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 44 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 LS Contribution 387.10 15.07 5.83 5.83 Total: -1.00 -34.73 387.10 -8.63 -43.36 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -5.60 Total: 4.09 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -4.46 Total: -1.52 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.03 Total: -49.01 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: 0.18 Total: -17.89 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.73 -8.63 -43.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323063297.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.737 kcal (2) G-P(sol) polarization free energy of solvation -34.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds