Wall clock time and date at job start Wed Apr 1 2020 04:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42901 * 109.47091 * 2 1 4 4 C 1.42905 * 114.00134 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47264 * 179.97438 * 4 3 2 6 6 N 1.31129 * 126.54729 * 89.71240 * 5 4 3 7 7 C 1.34497 * 105.60849 * 179.91609 * 6 5 4 8 8 C 1.50703 * 126.28293 * 180.12449 * 7 6 5 9 9 H 1.09000 * 109.47612 * 345.24129 * 8 7 6 10 10 C 1.53007 * 109.46747 * 105.24343 * 8 7 6 11 11 N 1.46496 * 109.47140 * 225.23645 * 8 7 6 12 12 S 1.65599 * 119.99750 * 145.00230 * 11 8 7 13 13 O 1.42109 * 104.27836 * 181.07628 * 12 11 8 14 14 O 1.42100 * 104.27910 * 308.93112 * 12 11 8 15 15 C 1.81392 * 104.45101 * 65.00449 * 12 11 8 16 16 C 1.53003 * 109.47495 * 179.97438 * 15 12 11 17 17 C 1.52997 * 109.47265 * 179.97438 * 16 15 12 18 18 C 1.50707 * 109.47185 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99512 * 0.02562 * 18 17 16 20 20 C 1.37873 * 119.99846 * 180.02562 * 18 17 16 21 21 N 1.31508 * 120.00540 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99791 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46913 * 59.99443 * 22 20 18 24 24 H 1.48494 * 109.47132 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46768 * 299.99704 * 22 20 18 26 26 N 1.29942 * 107.42634 * 0.35011 * 7 6 5 27 27 O 1.21295 * 110.25076 * 359.78187 * 26 7 6 28 28 H 1.08996 * 109.47307 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47184 * 300.00269 * 1 2 3 30 30 H 1.09003 * 109.47090 * 59.99900 * 1 2 3 31 31 H 1.08994 * 109.47303 * 240.00013 * 2 1 3 32 32 H 1.09002 * 109.47060 * 119.99543 * 2 1 3 33 33 H 1.09001 * 109.47103 * 300.00246 * 4 3 2 34 34 H 1.09004 * 109.47054 * 59.99750 * 4 3 2 35 35 H 1.08998 * 109.47039 * 180.02562 * 10 8 7 36 36 H 1.09001 * 109.46733 * 299.99334 * 10 8 7 37 37 H 1.08997 * 109.47344 * 60.00066 * 10 8 7 38 38 H 0.97003 * 120.00376 * 325.00636 * 11 8 7 39 39 H 1.08998 * 109.47395 * 299.99693 * 15 12 11 40 40 H 1.09002 * 109.47317 * 60.00256 * 15 12 11 41 41 H 1.08994 * 109.47495 * 300.00423 * 16 15 12 42 42 H 1.09003 * 109.46916 * 60.00013 * 16 15 12 43 43 H 1.09002 * 109.47481 * 300.00461 * 17 16 15 44 44 H 1.09002 * 109.47110 * 60.00813 * 17 16 15 45 45 H 0.97001 * 120.00185 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8195 2.9162 -0.0001 6 7 4.0152 3.6727 1.0530 7 6 4.3435 4.8850 0.5718 8 6 4.6692 6.1098 1.3871 9 1 4.3517 5.9550 2.4183 10 6 6.1781 6.3606 1.3502 11 7 3.9679 7.2686 0.8289 12 16 3.3962 8.4536 1.8345 13 8 2.7660 9.3806 0.9609 14 8 2.6496 7.7493 2.8173 15 6 4.8863 9.1824 2.5684 16 6 4.4857 10.3044 3.5284 17 6 5.7426 10.9187 4.1478 18 6 5.3480 12.0234 5.0939 19 1 4.3050 12.2630 5.2391 20 6 6.3185 12.7280 5.7740 21 7 7.5885 12.4359 5.5976 22 14 5.8293 14.0969 6.9473 23 1 4.9681 13.5428 8.0228 24 1 7.0492 14.6931 7.5484 25 1 5.0816 15.1424 6.2037 26 7 4.3235 4.8073 -0.7252 27 8 4.0247 3.6847 -1.0740 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8333 0.9767 0.8908 34 1 3.8340 0.9764 -0.8892 35 1 6.4137 7.2462 1.9402 36 1 6.6999 5.4984 1.7655 37 1 6.4956 6.5155 0.3190 38 1 3.8384 7.3418 -0.1296 39 1 5.4349 8.4151 3.1146 40 1 5.5187 9.5888 1.7790 41 1 3.9373 11.0717 2.9820 42 1 3.8532 9.8985 4.3179 43 1 6.2907 10.1512 4.6944 44 1 6.3755 11.3246 3.3586 45 1 8.2713 12.9314 6.0764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324157013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:55 Heat of formation + Delta-G solvation = -60.779369 kcal Electronic energy + Delta-G solvation = -27868.397880 eV Core-core repulsion = 23630.693271 eV Total energy + Delta-G solvation = -4237.704609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.02651 -38.79350 -37.69294 -36.88142 -35.81715 -35.51959 -34.70839 -33.26447 -32.21681 -31.60533 -30.07408 -27.94931 -27.84303 -25.40411 -23.76363 -23.62396 -23.39411 -21.45509 -20.67990 -19.37622 -18.69218 -18.34442 -17.43959 -17.16088 -16.84707 -16.75513 -16.49741 -15.89829 -15.78250 -15.22716 -14.65001 -14.50132 -14.27363 -14.15759 -13.93921 -13.48563 -13.04058 -12.99457 -12.82470 -12.52480 -12.31872 -12.05327 -12.01403 -11.99414 -11.96045 -11.89526 -11.81756 -11.75401 -11.69080 -11.43915 -11.24958 -10.89998 -10.86533 -10.54299 -10.39382 -10.36523 -9.98423 -9.95858 -9.37572 -9.13154 -8.40771 -6.05997 -4.09081 0.34883 0.61649 1.70474 2.20672 2.68097 3.00526 3.32338 3.34773 3.36174 3.39455 3.62327 3.88107 4.27853 4.33250 4.40365 4.42339 4.49376 4.59832 4.64830 4.69042 4.80101 4.82630 4.93775 5.08497 5.14487 5.16438 5.23720 5.30461 5.37689 5.38361 5.54290 5.63080 5.70533 5.77447 5.94370 6.24570 6.38561 6.42305 6.72279 6.85468 7.55706 7.65682 7.73670 7.91686 8.32139 8.96766 9.55662 11.05064 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.021902 B = 0.001882 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.100861 B =14876.290848 C =15088.902184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.382 6.382 4 C 0.160 3.840 5 C 0.177 3.823 6 N -0.449 5.449 7 C 0.173 3.827 8 C 0.240 3.760 9 H 0.126 0.874 10 C -0.177 4.177 11 N -1.119 6.119 12 S 2.597 3.403 13 O -0.956 6.956 14 O -0.957 6.957 15 C -0.609 4.609 16 C -0.106 4.106 17 C 0.031 3.969 18 C -0.527 4.527 19 H 0.058 0.942 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.895 3.105 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 N -0.364 5.364 27 O 0.093 5.907 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.420 0.580 39 H 0.130 0.870 40 H 0.133 0.867 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.021 0.979 44 H 0.021 0.979 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.766 -27.856 -14.460 31.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.016 4.016 3 O -0.301 6.301 4 C 0.082 3.918 5 C -0.044 4.044 6 N -0.184 5.184 7 C -0.102 4.102 8 C 0.131 3.869 9 H 0.144 0.856 10 C -0.237 4.237 11 N -0.876 5.876 12 S 2.694 3.306 13 O -0.947 6.947 14 O -0.947 6.947 15 C -0.741 4.741 16 C -0.145 4.145 17 C -0.007 4.007 18 C -0.566 4.566 19 H 0.076 0.924 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.722 3.278 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.201 1.201 26 N -0.069 5.069 27 O 0.030 5.970 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.254 0.746 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.040 0.960 44 H 0.039 0.961 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.445 -26.701 -14.182 30.913 hybrid contribution 0.636 0.401 0.164 0.770 sum -5.809 -26.300 -14.018 30.363 Atomic orbital electron populations 1.21768 0.93086 1.02638 1.03639 1.22585 0.96128 0.82117 1.00801 1.87983 1.18316 1.28101 1.95658 1.20520 0.83825 0.83134 1.04320 1.28240 0.97670 0.97681 0.80835 1.71895 1.16527 1.01252 1.28714 1.25800 1.00503 0.95531 0.88370 1.18984 0.93476 0.78260 0.96212 0.85629 1.22502 0.92642 1.04157 1.04351 1.55927 1.75097 1.34816 1.21751 1.05506 0.77269 0.73590 0.74263 1.93595 1.73545 1.62981 1.64541 1.93588 1.67957 1.71657 1.61456 1.30660 1.19677 1.11621 1.12114 1.21522 1.02871 0.93948 0.96204 1.19062 0.90658 0.95480 0.95525 1.21214 0.93165 1.17279 1.24919 0.92408 1.25009 0.94935 0.97425 0.96948 1.69941 0.99572 1.41268 1.42600 0.86614 0.77835 0.82156 0.81168 1.20125 1.21254 1.20132 1.74579 1.18280 0.98456 1.15553 1.85315 1.61338 1.14765 1.35565 0.90602 0.91496 0.91621 0.92584 0.92496 0.88115 0.89078 0.89544 0.90398 0.90914 0.74619 0.85192 0.84902 0.91484 0.91442 0.96048 0.96067 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 10.28 37.16 0.38 -0.29 16 2 C 0.06 0.25 6.66 37.16 0.25 0.50 16 3 O -0.38 -2.87 10.33 -35.23 -0.36 -3.24 16 4 C 0.16 0.86 6.56 36.01 0.24 1.10 16 5 C 0.18 1.67 8.14 -13.06 -0.11 1.56 16 6 N -0.45 -5.33 11.55 -9.88 -0.11 -5.44 16 7 C 0.17 2.10 7.04 -156.37 -1.10 1.00 16 8 C 0.24 2.73 3.35 -69.08 -0.23 2.50 16 9 H 0.13 1.42 7.48 -51.93 -0.39 1.03 16 10 C -0.18 -1.62 9.46 37.16 0.35 -1.27 16 11 N -1.12 -13.63 5.35 -5.88 -0.03 -13.66 16 12 S 2.60 39.08 5.44 -107.50 -0.58 38.50 16 13 O -0.96 -17.22 18.08 -57.54 -1.04 -18.26 16 14 O -0.96 -17.19 17.39 -57.54 -1.00 -18.19 16 15 C -0.61 -9.06 5.22 37.16 0.19 -8.87 16 16 C -0.11 -2.11 5.16 -26.73 -0.14 -2.25 16 17 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 18 C -0.53 -14.77 9.11 -34.44 -0.31 -15.09 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 22 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 N -0.36 -4.36 11.92 30.89 0.37 -4.00 16 27 O 0.09 0.97 11.31 18.12 0.20 1.17 16 28 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.14 8.14 -51.93 -0.42 -0.29 16 32 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 35 H 0.09 0.75 5.78 -51.93 -0.30 0.45 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.42 4.74 8.59 -34.47 -0.30 4.44 16 39 H 0.13 1.65 6.77 -51.92 -0.35 1.30 16 40 H 0.13 1.74 8.14 -51.92 -0.42 1.31 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 395.59 15.07 5.96 5.96 Total: -1.00 -37.55 395.59 -8.40 -45.95 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.80 Total: -0.81 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -0.71 Total: -18.90 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: 0.96 Total: -48.73 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -2.20 Total: -38.51 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 39.08 SS G_CDS: -0.58 Total: 38.50 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.55 -8.40 -45.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324157013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.831 kcal (2) G-P(sol) polarization free energy of solvation -37.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds