Wall clock time and date at job start Wed Apr 1 2020 05:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 S 1.65599 * 119.99871 * 2 1 4 4 O 1.42097 * 104.27892 * 308.92804 * 3 2 1 5 5 O 1.42110 * 104.27667 * 181.07661 * 3 2 1 6 6 C 1.81401 * 104.45065 * 65.00255 * 3 2 1 7 7 C 1.50706 * 109.46975 * 180.02562 * 6 3 2 8 8 O 1.21277 * 120.00138 * 359.97438 * 7 6 3 9 9 N 1.34771 * 119.99679 * 179.97438 * 7 6 3 10 10 C 1.46501 * 119.99799 * 179.97438 * 9 7 6 11 11 C 1.53007 * 109.46914 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.26554 * 304.38561 * 11 10 9 13 13 C 1.55014 * 110.38142 * 182.26145 * 11 10 9 14 14 C 1.55484 * 101.04288 * 205.00254 * 13 11 10 15 15 C 1.53659 * 101.97023 * 33.48976 * 14 13 11 16 16 C 1.52694 * 115.27094 * 206.89751 * 15 14 13 17 17 N 1.47206 * 87.79847 * 219.25251 * 16 15 14 18 18 C 1.36942 * 135.97483 * 206.43081 * 17 16 15 19 19 H 1.07998 * 119.99662 * 6.48704 * 18 17 16 20 20 C 1.38810 * 119.99956 * 186.48113 * 18 17 16 21 21 N 1.31624 * 120.00077 * 6.42088 * 20 18 17 22 22 Si 1.86795 * 119.99801 * 186.41661 * 20 18 17 23 23 H 1.48495 * 109.47273 * 265.02243 * 22 20 18 24 24 H 1.48505 * 109.47005 * 145.02269 * 22 20 18 25 25 H 1.48501 * 109.47407 * 25.02586 * 22 20 18 26 26 C 1.47214 * 88.05471 * 26.69103 * 17 16 15 27 27 O 1.42398 * 108.52836 * 339.12856 * 15 14 13 28 28 H 1.08993 * 109.47310 * 59.99983 * 1 2 3 29 29 H 1.08998 * 109.47112 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47158 * 299.99773 * 1 2 3 31 31 H 0.97001 * 120.00596 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.46640 * 60.00286 * 6 3 2 33 33 H 1.08995 * 109.47030 * 299.99855 * 6 3 2 34 34 H 0.97002 * 120.00280 * 0.02562 * 9 7 6 35 35 H 1.08997 * 109.46975 * 60.00750 * 10 9 7 36 36 H 1.08995 * 109.47231 * 299.99990 * 10 9 7 37 37 H 1.08996 * 111.10564 * 322.95021 * 13 11 10 38 38 H 1.09005 * 111.10446 * 87.02036 * 13 11 10 39 39 H 1.08998 * 110.93713 * 275.31886 * 14 13 11 40 40 H 1.09000 * 110.93180 * 151.65667 * 14 13 11 41 41 H 1.09000 * 113.49973 * 104.51257 * 16 15 14 42 42 H 1.09003 * 113.55269 * 333.99358 * 16 15 14 43 43 H 0.97001 * 119.99419 * 179.97438 * 21 20 18 44 44 H 1.09000 * 113.49681 * 88.03731 * 26 17 16 45 45 H 1.08991 * 113.49728 * 218.58097 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4341 0.0000 4 8 1.7188 2.1703 -1.0713 5 8 3.6607 1.0492 -0.0259 6 6 1.8764 2.1973 1.5921 7 6 2.5783 3.5256 1.7113 8 8 3.2898 3.9185 0.8112 9 7 2.4152 4.2769 2.8183 10 6 3.0979 5.5679 2.9344 11 6 2.7465 6.2116 4.2773 12 1 1.6651 6.2990 4.3826 13 6 3.4130 7.6059 4.3985 14 6 3.5017 7.7603 5.9431 15 6 3.7332 6.3102 6.3956 16 6 3.2465 5.9816 7.8051 17 7 4.4571 5.1605 7.9704 18 6 4.8139 4.0725 8.7215 19 1 4.0725 3.5613 9.3177 20 6 6.1284 3.6265 8.7165 21 7 7.0565 4.3208 8.0928 22 14 6.5802 2.0412 9.5950 23 1 7.0640 2.3542 10.9636 24 1 7.6513 1.3441 8.8387 25 1 5.3844 1.1648 9.6811 26 6 5.1182 6.0253 6.9794 27 8 3.2927 5.4373 5.3603 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.9501 -0.8400 -0.0004 32 1 2.1959 1.5430 2.4032 33 1 0.7988 2.3497 1.6510 34 1 1.8464 3.9625 3.5384 35 1 2.7788 6.2219 2.1230 36 1 4.1756 5.4156 2.8760 37 1 4.4047 7.6075 3.9462 38 1 2.7836 8.3811 3.9614 39 1 2.5689 8.1509 6.3497 40 1 4.3427 8.3946 6.2234 41 1 2.3230 5.4029 7.8222 42 1 3.2144 6.8467 8.4675 43 1 7.9751 4.0093 8.0896 44 1 5.5942 6.9028 7.4171 45 1 5.7752 5.4834 6.2992 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327362688.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:15 Heat of formation + Delta-G solvation = -119.458936 kcal Electronic energy + Delta-G solvation = -28890.832541 eV Core-core repulsion = 24650.583395 eV Total energy + Delta-G solvation = -4240.249146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 16.43 seconds Orbital eigenvalues (eV) -41.48506 -40.85668 -38.27349 -38.18422 -37.09762 -36.00307 -35.77018 -34.17925 -33.14612 -32.09155 -30.34010 -28.49556 -26.79035 -26.52850 -25.42590 -23.22707 -22.55671 -21.97336 -20.59982 -20.48673 -19.12196 -18.74985 -18.23134 -18.01191 -17.66314 -17.40729 -16.98688 -16.67720 -16.52469 -16.15016 -15.72707 -15.51044 -15.24911 -15.06985 -14.93152 -14.59746 -14.31918 -14.18318 -13.90940 -13.75542 -13.46228 -13.27300 -13.25269 -13.17569 -13.13078 -12.80667 -12.65578 -12.53861 -12.51656 -12.40489 -12.24906 -12.12621 -11.66281 -11.48623 -11.33348 -11.29529 -10.90821 -10.51378 -10.33201 -10.20192 -8.94376 -7.94387 -5.25122 -0.93234 1.22726 1.42030 1.44919 1.53997 1.66550 2.00720 2.45415 2.65892 2.80319 3.15786 3.29786 3.34493 3.40643 3.64572 3.70892 3.80168 3.90459 3.99160 4.15626 4.18993 4.24330 4.43095 4.50732 4.58609 4.70659 4.76507 4.84956 4.89997 4.92105 4.96688 5.00251 5.05401 5.11053 5.17295 5.20792 5.24630 5.34088 5.48234 5.89405 6.07685 6.18385 6.35179 6.87819 6.88342 7.58304 8.59895 9.25043 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.010551 B = 0.002791 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.157707 B =10029.659766 C =11815.010105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -1.113 6.113 3 S 2.652 3.348 4 O -0.981 6.981 5 O -0.995 6.995 6 C -0.659 4.659 7 C 0.529 3.471 8 O -0.589 6.589 9 N -0.697 5.697 10 C 0.116 3.884 11 C 0.062 3.938 12 H 0.109 0.891 13 C -0.138 4.138 14 C -0.127 4.127 15 C 0.081 3.919 16 C 0.112 3.888 17 N -0.639 5.639 18 C -0.226 4.226 19 H 0.086 0.914 20 C -0.071 4.071 21 N -0.956 5.956 22 Si 0.980 3.020 23 H -0.284 1.284 24 H -0.297 1.297 25 H -0.264 1.264 26 C 0.153 3.847 27 O -0.364 6.364 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.427 0.573 32 H 0.193 0.807 33 H 0.209 0.791 34 H 0.422 0.578 35 H 0.105 0.895 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.123 0.877 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.247 0.753 44 H 0.032 0.968 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.875 -1.003 -12.934 24.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.877 5.877 3 S 2.741 3.259 4 O -0.971 6.971 5 O -0.985 6.985 6 C -0.789 4.789 7 C 0.314 3.686 8 O -0.471 6.471 9 N -0.348 5.348 10 C -0.007 4.007 11 C 0.005 3.995 12 H 0.127 0.873 13 C -0.176 4.176 14 C -0.165 4.165 15 C 0.040 3.960 16 C -0.013 4.013 17 N -0.364 5.364 18 C -0.354 4.354 19 H 0.103 0.897 20 C -0.264 4.264 21 N -0.605 5.605 22 Si 0.807 3.193 23 H -0.211 1.211 24 H -0.224 1.224 25 H -0.188 1.188 26 C 0.027 3.973 27 O -0.284 6.284 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.106 0.894 31 H 0.263 0.737 32 H 0.210 0.790 33 H 0.226 0.774 34 H 0.259 0.741 35 H 0.122 0.878 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.141 0.859 39 H 0.126 0.874 40 H 0.105 0.895 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.056 0.944 44 H 0.050 0.950 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -19.762 -0.716 -14.074 24.272 hybrid contribution 0.849 -1.217 1.646 2.216 sum -18.913 -1.933 -12.428 22.713 Atomic orbital electron populations 1.21913 0.76801 1.06463 1.03029 1.55184 1.17177 1.23557 1.91752 1.03548 0.72553 0.73616 0.76139 1.93533 1.79260 1.73559 1.50716 1.93549 1.35610 1.81975 1.87348 1.30970 1.15076 1.05012 1.27837 1.19802 0.80737 0.85482 0.82576 1.90844 1.41403 1.73922 1.40969 1.45735 1.49217 1.20537 1.19292 1.21727 0.97272 0.84396 0.97354 1.23557 0.99529 0.91179 0.85222 0.87297 1.23249 1.02310 0.96106 0.95926 1.22877 1.04513 0.93524 0.95634 1.22998 0.95066 0.89873 0.88105 1.22885 0.91054 0.93958 0.93415 1.45943 1.12276 1.30067 1.48153 1.19331 0.93515 1.02310 1.20285 0.89665 1.25694 0.95490 1.02807 1.02422 1.70043 1.00750 1.40443 1.49267 0.85045 0.77701 0.79072 0.77440 1.21080 1.22386 1.18838 1.22331 0.93775 0.91812 0.89420 1.88377 1.79754 1.32199 1.28034 0.92034 0.87366 0.89412 0.73653 0.78957 0.77410 0.74054 0.87750 0.93193 0.90989 0.85900 0.87432 0.89550 0.92921 0.91990 0.94449 0.95025 0.96475 Number of geometries 1 Number of calculations of the screened coulomb radii 3 The total number of SCF iterations 322. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.33 11.03 127.77 1.41 1.74 16 2 N -1.11 -12.53 6.08 -206.55 -1.25 -13.79 16 3 S 2.65 56.84 4.60 -56.49 -0.26 56.58 16 4 O -0.98 -27.91 17.73 -127.64 -2.26 -30.17 16 5 O -0.99 -31.45 18.08 -127.64 -2.31 -33.76 16 6 C -0.66 -9.38 6.51 71.24 0.46 -8.92 16 7 C 0.53 13.33 7.85 87.66 0.69 14.02 16 8 O -0.59 -20.61 15.86 -3.02 -0.05 -20.66 16 9 N -0.70 -15.33 5.54 -463.06 -2.56 -17.89 16 10 C 0.12 2.76 5.39 86.38 0.47 3.22 16 11 C 0.06 1.37 3.48 31.29 0.11 1.48 16 12 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 13 C -0.14 -2.62 6.58 32.14 0.21 -2.40 16 14 C -0.13 -2.93 6.39 31.67 0.20 -2.73 16 15 C 0.08 2.84 1.75 -10.68 -0.02 2.82 16 16 C 0.11 4.37 8.20 83.38 0.68 5.05 16 17 N -0.64 -33.64 3.77 -739.08 -2.79 -36.43 16 18 C -0.23 -13.07 10.73 84.03 0.90 -12.17 16 19 H 0.09 4.66 7.84 -2.91 -0.02 4.64 16 20 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16 21 N -0.96 -60.30 11.82 21.65 0.26 -60.05 16 22 Si 0.98 46.96 29.56 68.60 2.03 48.98 16 23 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 24 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 25 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 26 C 0.15 7.43 6.70 83.48 0.56 7.99 16 27 O -0.36 -12.47 10.84 -148.98 -1.62 -14.08 16 28 H 0.06 0.46 8.04 -2.39 -0.02 0.44 16 29 H 0.11 0.08 8.14 -2.39 -0.02 0.07 16 30 H 0.09 -0.03 7.73 -2.39 -0.02 -0.05 16 31 H 0.43 3.73 8.92 -96.75 -0.86 2.86 16 32 H 0.19 1.70 8.14 -2.39 -0.02 1.69 16 33 H 0.21 0.76 7.77 -2.39 -0.02 0.74 16 34 H 0.42 7.07 8.47 -92.71 -0.79 6.28 16 35 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.07 1.55 8.05 -2.39 -0.02 1.53 16 38 H 0.12 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.11 1.86 8.13 -2.39 -0.02 1.84 16 40 H 0.09 2.01 7.81 -2.39 -0.02 2.00 16 41 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 42 H 0.06 2.19 8.13 -2.39 -0.02 2.17 16 43 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 44 H 0.03 1.56 7.95 -2.39 -0.02 1.54 16 45 H 0.02 0.96 7.60 -2.39 -0.02 0.94 16 Total: -1.00 -97.41 387.05 -5.30 -102.71 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -0.63 Total: 12.21 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 6.14 Total: 6.35 kcal Atomic # 7 Polarization: -121.81 SS G_CDS: -6.35 Total: -128.16 kcal Atomic # 8 Polarization: -92.44 SS G_CDS: -6.23 Total: -98.68 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.98 kcal Atomic # 16 Polarization: 56.84 SS G_CDS: -0.26 Total: 56.58 kcal Total: -97.41 -5.30 -102.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327362688.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.751 kcal (2) G-P(sol) polarization free energy of solvation -97.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 16.43 seconds