Wall clock time and date at job start Wed Apr 1 2020 05:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34767 * 124.17738 * 2 1 4 4 O 1.21237 * 127.15565 * 0.02562 * 3 2 1 5 5 C 1.51581 * 105.68769 * 179.97438 * 3 2 1 6 6 N 1.47308 * 103.59166 * 0.32444 * 5 3 2 7 7 C 1.46504 * 126.69141 * 179.84217 * 6 5 3 8 8 C 1.50700 * 109.46979 * 269.97863 * 7 6 5 9 9 O 1.21283 * 119.99803 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00258 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99971 * 180.02562 * 10 8 7 12 12 C 1.50709 * 109.46635 * 180.02562 * 11 10 8 13 13 C 1.38306 * 119.92747 * 269.72262 * 12 11 10 14 14 C 1.38092 * 120.06418 * 179.72581 * 13 12 11 15 15 C 1.38880 * 119.93199 * 0.57452 * 14 13 12 16 16 O 1.35753 * 120.06902 * 179.67878 * 15 14 13 17 17 C 1.34830 * 117.00246 * 174.48507 * 16 15 14 18 18 H 1.08003 * 119.99496 * 5.05688 * 17 16 15 19 19 C 1.38651 * 120.00443 * 185.05786 * 17 16 15 20 20 N 1.31560 * 120.00089 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99797 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47503 * 89.99978 * 21 19 17 23 23 H 1.48498 * 109.47113 * 209.99839 * 21 19 17 24 24 H 1.48498 * 109.47215 * 329.99556 * 21 19 17 25 25 C 1.38881 * 119.86284 * 359.70320 * 15 14 13 26 26 C 1.38098 * 119.92938 * 359.97438 * 25 15 14 27 27 C 1.33793 * 124.18077 * 180.30091 * 2 1 3 28 28 O 1.21544 * 123.76745 * 359.96230 * 27 2 1 29 29 H 1.08999 * 109.47158 * 269.69412 * 1 2 3 30 30 H 1.09008 * 109.46982 * 149.69933 * 1 2 3 31 31 H 1.09000 * 109.47011 * 29.70337 * 1 2 3 32 32 H 1.08994 * 110.76802 * 241.71373 * 5 3 2 33 33 H 1.09001 * 110.43347 * 118.76973 * 5 3 2 34 34 H 1.08992 * 109.46937 * 29.97946 * 7 6 5 35 35 H 1.09005 * 109.47337 * 149.98160 * 7 6 5 36 36 H 0.97006 * 119.99566 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.46846 * 299.99193 * 11 10 8 38 38 H 1.08995 * 109.47449 * 60.00317 * 11 10 8 39 39 H 1.07995 * 119.96144 * 359.97438 * 13 12 11 40 40 H 1.08007 * 120.03481 * 180.27388 * 14 13 12 41 41 H 0.97002 * 119.99785 * 180.02562 * 20 19 17 42 42 H 1.08004 * 120.03216 * 179.97438 * 25 15 14 43 43 H 1.07994 * 119.96326 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2221 1.1149 0.0000 4 8 1.8340 2.2635 0.0004 5 6 3.6596 0.6342 0.0007 6 7 3.5339 -0.8335 -0.0071 7 6 4.6296 -1.8059 -0.0130 8 6 5.0041 -2.1321 -1.4358 9 8 4.4135 -1.6046 -2.3544 10 7 5.9946 -3.0108 -1.6874 11 6 6.3590 -3.3274 -3.0706 12 6 7.4853 -4.3288 -3.0766 13 6 8.7974 -3.8916 -3.0804 14 6 9.8316 -4.8067 -3.0802 15 6 9.5530 -6.1672 -3.0882 16 8 10.5675 -7.0692 -3.0946 17 6 10.2306 -8.3703 -2.9868 18 1 9.1901 -8.6600 -2.9828 19 6 11.2196 -9.3362 -2.8810 20 7 10.8908 -10.6056 -2.7753 21 14 13.0191 -8.8348 -2.8871 22 1 13.4666 -8.5794 -1.4944 23 1 13.8350 -9.9265 -3.4768 24 1 13.1862 -7.6002 -3.6951 25 6 8.2343 -6.6031 -3.0902 26 6 7.2045 -5.6830 -3.0837 27 6 2.2167 -1.1068 -0.0058 28 8 1.7603 -2.2333 -0.0111 29 1 -0.3633 -0.0055 1.0276 30 1 -0.3633 -0.8873 -0.5185 31 1 -0.3633 0.8926 -0.5092 32 1 4.1790 0.9699 0.8982 33 1 4.1768 0.9795 -0.8946 34 1 5.4925 -1.3841 0.5023 35 1 4.3110 -2.7154 0.4965 36 1 6.4667 -3.4329 -0.9526 37 1 5.4961 -3.7487 -3.5863 38 1 6.6783 -2.4180 -3.5796 39 1 9.0132 -2.8334 -3.0795 40 1 10.8560 -4.4646 -3.0787 41 1 11.5828 -11.2813 -2.7009 42 1 8.0146 -7.6605 -3.0969 43 1 6.1789 -6.0213 -3.0848 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329784752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:12 Heat of formation + Delta-G solvation = -88.205412 kcal Electronic energy + Delta-G solvation = -28712.204321 eV Core-core repulsion = 24337.866478 eV Total energy + Delta-G solvation = -4374.337843 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -43.35642 -41.07263 -40.55477 -39.67893 -38.60049 -37.28507 -36.24081 -35.62852 -34.44106 -32.15892 -31.83093 -30.90202 -28.24440 -28.08127 -27.31826 -25.77831 -23.71527 -23.59197 -22.17298 -21.88901 -21.11828 -19.84117 -19.17611 -18.81542 -18.58907 -17.81822 -17.73497 -17.09222 -16.88372 -16.66414 -16.24049 -16.00088 -15.75650 -15.68209 -15.57936 -15.37004 -15.20211 -15.01480 -14.82759 -14.47864 -14.34540 -14.24391 -14.05266 -13.68613 -13.60139 -13.51159 -13.09935 -12.96104 -12.58161 -12.45958 -12.32239 -12.07924 -11.93280 -11.42031 -11.32466 -11.29772 -10.93140 -10.90383 -10.07725 -10.04339 -9.82333 -9.07727 -8.50278 -6.23508 0.47586 0.55823 0.56788 0.97745 1.33390 1.36569 1.53091 1.61163 1.82444 1.92381 2.28052 2.40077 2.80873 3.02453 3.06761 3.15440 3.68650 3.78490 3.90200 4.01890 4.14985 4.19219 4.26731 4.36811 4.39765 4.40958 4.44480 4.48562 4.55414 4.69996 4.74247 4.80898 4.85302 4.96933 5.23057 5.23208 5.35009 5.42544 5.54849 5.71813 5.79662 5.89216 5.99403 6.20227 6.28381 6.57536 6.83817 6.93191 7.24331 7.56732 8.60928 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.029186 B = 0.001670 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.118057 B =16763.729444 C =17153.358471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.584 5.584 3 C 0.524 3.476 4 O -0.500 6.500 5 C 0.072 3.928 6 N -0.606 5.606 7 C 0.134 3.866 8 C 0.489 3.511 9 O -0.581 6.581 10 N -0.710 5.710 11 C 0.184 3.816 12 C -0.172 4.172 13 C -0.041 4.041 14 C -0.191 4.191 15 C 0.128 3.872 16 O -0.242 6.242 17 C -0.399 4.399 18 H 0.082 0.918 19 C 0.009 3.991 20 N -0.922 5.922 21 Si 0.972 3.028 22 H -0.264 1.264 23 H -0.271 1.271 24 H -0.261 1.261 25 C -0.240 4.240 26 C -0.052 4.052 27 C 0.697 3.303 28 O -0.580 6.580 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.171 0.829 33 H 0.136 0.864 34 H 0.174 0.826 35 H 0.129 0.871 36 H 0.416 0.584 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.159 0.841 40 H 0.132 0.868 41 H 0.285 0.715 42 H 0.106 0.894 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.229 24.892 9.192 29.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.329 5.329 3 C 0.314 3.686 4 O -0.373 6.373 5 C -0.052 4.052 6 N -0.342 5.342 7 C 0.010 3.990 8 C 0.275 3.725 9 O -0.461 6.461 10 N -0.363 5.363 11 C 0.061 3.939 12 C -0.174 4.174 13 C -0.060 4.060 14 C -0.210 4.210 15 C 0.079 3.921 16 O -0.149 6.149 17 C -0.476 4.476 18 H 0.099 0.901 19 C -0.189 4.189 20 N -0.562 5.562 21 Si 0.794 3.206 22 H -0.189 1.189 23 H -0.195 1.195 24 H -0.185 1.185 25 C -0.259 4.259 26 C -0.071 4.071 27 C 0.400 3.600 28 O -0.457 6.457 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.188 0.812 33 H 0.153 0.847 34 H 0.192 0.808 35 H 0.147 0.853 36 H 0.253 0.747 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.177 0.823 40 H 0.150 0.850 41 H 0.094 0.906 42 H 0.124 0.876 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.788 25.017 8.536 29.364 hybrid contribution 0.416 -1.256 -0.127 1.329 sum -12.372 23.761 8.409 28.078 Atomic orbital electron populations 1.21985 0.74245 1.04902 1.04703 1.46384 1.10446 1.08012 1.68045 1.21284 0.89988 0.84056 0.73280 1.90816 1.79889 1.18770 1.47782 1.22783 0.94171 0.78934 1.09340 1.47124 1.04017 1.07581 1.75481 1.21473 0.90391 0.94436 0.92703 1.21764 0.79102 0.78659 0.92980 1.90718 1.53688 1.53706 1.47998 1.46085 1.36554 1.44358 1.09292 1.19863 0.94266 0.96508 0.83274 1.19530 0.94423 0.92963 1.10439 1.20962 0.90394 0.99697 0.94898 1.20548 1.01172 0.88882 1.10400 1.19772 0.87656 0.90534 0.94182 1.83521 1.32635 1.16152 1.82598 1.20693 0.95620 0.79144 1.52104 0.90098 1.25307 1.04332 0.93876 0.95412 1.69735 1.36403 1.00678 1.49420 0.85197 0.77418 0.78529 0.79465 1.18891 1.19550 1.18541 1.21258 0.92925 1.00382 1.11337 1.20906 0.98114 0.92526 0.95556 1.16031 0.82769 0.83921 0.77319 1.90967 1.76028 1.21948 1.56753 0.89378 0.89819 0.88564 0.81227 0.84660 0.80828 0.85305 0.74670 0.92297 0.90145 0.82339 0.84969 0.90574 0.87573 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.06 10.73 127.77 1.37 2.44 16 2 N -0.58 -9.81 3.00 -796.63 -2.39 -12.20 16 3 C 0.52 7.71 8.31 87.94 0.73 8.44 16 4 O -0.50 -9.96 17.75 -2.90 -0.05 -10.01 16 5 C 0.07 0.54 7.66 85.76 0.66 1.20 16 6 N -0.61 -7.84 2.51 -846.24 -2.12 -9.96 16 7 C 0.13 1.17 6.63 85.63 0.57 1.74 16 8 C 0.49 8.35 7.90 87.66 0.69 9.04 16 9 O -0.58 -15.45 16.43 -3.04 -0.05 -15.50 16 10 N -0.71 -10.97 5.55 -466.78 -2.59 -13.56 16 11 C 0.18 3.71 5.80 85.64 0.50 4.21 16 12 C -0.17 -4.24 5.25 -19.83 -0.10 -4.35 16 13 C -0.04 -1.01 9.69 22.25 0.22 -0.79 16 14 C -0.19 -6.28 9.99 22.39 0.22 -6.06 16 15 C 0.13 5.48 6.65 22.58 0.15 5.63 16 16 O -0.24 -12.41 8.59 -22.78 -0.20 -12.61 16 17 C -0.40 -22.64 9.95 67.92 0.68 -21.96 16 18 H 0.08 4.83 5.44 -2.91 -0.02 4.81 16 19 C 0.01 0.53 5.49 84.83 0.47 0.99 16 20 N -0.92 -53.79 13.96 21.61 0.30 -53.49 16 21 Si 0.97 43.72 28.62 68.60 1.96 45.68 16 22 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 24 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 25 C -0.24 -9.69 9.17 22.39 0.21 -9.48 16 26 C -0.05 -1.61 9.69 22.25 0.22 -1.39 16 27 C 0.70 14.08 8.31 179.44 1.49 15.57 16 28 O -0.58 -16.27 17.15 -3.85 -0.07 -16.34 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 1.19 7.86 -2.38 -0.02 1.17 16 31 H 0.10 1.06 8.00 -2.39 -0.02 1.04 16 32 H 0.17 -0.16 8.14 -2.39 -0.02 -0.18 16 33 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.17 -0.30 8.14 -2.39 -0.02 -0.32 16 35 H 0.13 1.07 8.03 -2.38 -0.02 1.05 16 36 H 0.42 4.61 8.46 -92.70 -0.78 3.83 16 37 H 0.06 1.37 8.08 -2.39 -0.02 1.35 16 38 H 0.08 1.53 8.08 -2.39 -0.02 1.51 16 39 H 0.16 2.64 8.06 -2.91 -0.02 2.61 16 40 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 41 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 42 H 0.11 4.86 5.64 -2.91 -0.02 4.84 16 43 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -82.95 380.75 3.14 -79.81 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.29 Total: 12.94 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 8.05 Total: 5.24 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -6.80 Total: -89.22 kcal Atomic # 8 Polarization: -54.09 SS G_CDS: -0.36 Total: -54.45 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.96 Total: 45.68 kcal Total: -82.95 3.14 -79.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329784752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.396 kcal (2) G-P(sol) polarization free energy of solvation -82.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds