Wall clock time and date at job start Wed Apr 1 2020 06:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42091 * 108.57870 * 2 1 4 4 O 1.42101 * 108.57798 * 228.97122 * 2 1 3 5 5 C 1.81408 * 101.92038 * 114.48417 * 2 1 3 6 6 H 1.09004 * 109.47035 * 65.00104 * 5 2 1 7 7 C 1.53001 * 109.46937 * 305.00314 * 5 2 1 8 8 C 1.53002 * 109.46637 * 179.97438 * 7 5 2 9 9 C 1.53006 * 109.46977 * 59.99946 * 8 7 5 10 10 C 1.52997 * 109.47127 * 299.99541 * 9 8 7 11 11 H 1.09002 * 109.47153 * 180.02562 * 10 9 8 12 12 N 1.46505 * 109.47212 * 300.00138 * 10 9 8 13 13 C 1.34769 * 119.99798 * 274.99913 * 12 10 9 14 14 O 1.21580 * 120.00601 * 0.02562 * 13 12 10 15 15 N 1.34781 * 119.99697 * 179.97438 * 13 12 10 16 16 C 1.46503 * 119.99998 * 179.97438 * 15 13 12 17 17 C 1.50704 * 109.46724 * 180.02562 * 16 15 13 18 18 O 1.21282 * 120.00683 * 0.02562 * 17 16 15 19 19 N 1.34778 * 119.99444 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99967 * 179.97438 * 19 17 16 21 21 H 1.08002 * 119.99781 * 0.02562 * 20 19 17 22 22 C 1.38947 * 119.99908 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00374 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 119.99649 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46776 * 60.00418 * 24 22 20 26 26 H 1.48497 * 109.46745 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47302 * 300.00107 * 24 22 20 28 28 C 1.52996 * 109.46890 * 185.00124 * 5 2 1 29 29 H 1.08999 * 109.46904 * 305.51506 * 1 2 3 30 30 H 1.08994 * 109.47276 * 65.51550 * 1 2 3 31 31 H 1.08999 * 109.46947 * 185.51353 * 1 2 3 32 32 H 1.08996 * 109.46778 * 299.99759 * 7 5 2 33 33 H 1.08992 * 109.47514 * 60.00046 * 7 5 2 34 34 H 1.09000 * 109.46986 * 179.97438 * 8 7 5 35 35 H 1.08993 * 109.47662 * 299.99908 * 8 7 5 36 36 H 1.08998 * 109.46505 * 179.97438 * 9 8 7 37 37 H 1.08996 * 109.46884 * 60.00293 * 9 8 7 38 38 H 0.97005 * 119.99239 * 94.99888 * 12 10 9 39 39 H 0.96998 * 120.00231 * 0.02562 * 15 13 12 40 40 H 1.08999 * 109.47056 * 300.00054 * 16 15 13 41 41 H 1.09001 * 109.46660 * 60.00398 * 16 15 13 42 42 H 0.97007 * 120.00202 * 0.02562 * 19 17 16 43 43 H 0.97001 * 120.00104 * 179.97438 * 23 22 20 44 44 H 1.08996 * 109.47452 * 59.99858 * 28 5 2 45 45 H 1.09000 * 109.47054 * 300.00017 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 1 1.8388 -1.7678 1.6345 7 6 1.4845 0.0621 2.7147 8 6 1.8000 -0.5588 4.0770 9 6 3.3114 -0.5286 4.3134 10 6 4.0156 -1.3263 3.2141 11 1 5.0923 -1.3052 3.3828 12 7 3.5449 -2.7135 3.2395 13 6 4.1174 -3.6041 4.0733 14 8 5.0241 -3.2564 4.8048 15 7 3.6840 -4.8801 4.0970 16 6 4.3067 -5.8485 5.0030 17 6 3.6443 -7.1917 4.8347 18 8 2.7415 -7.3270 4.0363 19 7 4.0554 -8.2427 5.5715 20 6 3.4526 -9.4645 5.4189 21 1 2.6486 -9.5849 4.7079 22 6 3.8767 -10.5482 6.1782 23 7 4.8553 -10.4018 7.0429 24 14 3.0557 -12.2132 5.9696 25 1 3.2178 -12.6726 4.5668 26 1 3.6865 -13.1945 6.8884 27 1 1.6101 -12.0957 6.2882 28 6 3.7001 -0.7049 1.8514 29 1 -0.3633 0.5970 0.8365 30 1 -0.3633 0.4259 -0.9352 31 1 -0.3633 -1.0229 0.0987 32 1 1.8344 1.0942 2.6955 33 1 0.4078 0.0403 2.5465 34 1 1.2987 0.0098 4.8603 35 1 1.4499 -1.5908 4.0959 36 1 3.5361 -0.9705 5.2841 37 1 3.6615 0.5034 4.2946 38 1 2.8212 -2.9907 2.6561 39 1 2.9603 -5.1575 3.5137 40 1 5.3677 -5.9351 4.7688 41 1 4.1881 -5.5110 6.0326 42 1 4.7773 -8.1345 6.2104 43 1 5.1511 -11.1582 7.5732 44 1 4.0500 0.3272 1.8322 45 1 4.2017 -1.2732 1.0682 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342602401.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:23:41 Heat of formation + Delta-G solvation = -177.556399 kcal Electronic energy + Delta-G solvation = -28597.871096 eV Core-core repulsion = 24355.102655 eV Total energy + Delta-G solvation = -4242.768441 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.49668 -40.26599 -39.21374 -37.99359 -37.03069 -36.23139 -35.25011 -34.78422 -33.36320 -32.08731 -31.35888 -30.00410 -28.79667 -26.35186 -24.18290 -23.62786 -22.42868 -21.36660 -20.46140 -20.12790 -19.85340 -19.47845 -17.94285 -17.47539 -17.33737 -16.95431 -16.88912 -16.77001 -16.45521 -16.07559 -15.95459 -15.77683 -15.47772 -15.17568 -14.99560 -14.37338 -14.02440 -13.93475 -13.87542 -13.77317 -13.53533 -13.52232 -13.25901 -13.14356 -13.03156 -12.98426 -12.89756 -12.80333 -12.46485 -12.17833 -12.13605 -11.87367 -11.56224 -11.55526 -11.43049 -11.36908 -10.84847 -10.54750 -10.36584 -10.09686 -9.79949 -8.50324 -6.00607 -0.92398 1.38568 1.42745 1.52990 1.62713 1.85078 1.90806 2.14626 2.29060 2.71766 3.03617 3.07990 3.16971 3.33817 3.41010 3.56632 3.78746 4.08726 4.13788 4.14210 4.21597 4.23813 4.30069 4.39839 4.43849 4.47122 4.53781 4.61881 4.80728 4.89504 4.94763 5.03518 5.10905 5.24617 5.29239 5.33845 5.38879 5.39341 5.60791 5.92011 5.97658 6.48653 7.03940 7.04886 7.43773 7.56221 7.95012 8.66336 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.019408 B = 0.002016 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.323399 B =13883.652608 C =14650.856082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.420 3.580 3 O -0.975 6.975 4 O -0.989 6.989 5 C -0.565 4.565 6 H 0.153 0.847 7 C -0.111 4.111 8 C -0.109 4.109 9 C -0.134 4.134 10 C 0.173 3.827 11 H 0.076 0.924 12 N -0.725 5.725 13 C 0.705 3.295 14 O -0.630 6.630 15 N -0.725 5.725 16 C 0.142 3.858 17 C 0.434 3.566 18 O -0.623 6.623 19 N -0.560 5.560 20 C -0.337 4.337 21 H 0.087 0.913 22 C -0.011 4.011 23 N -0.917 5.917 24 Si 0.997 3.003 25 H -0.270 1.270 26 H -0.273 1.273 27 H -0.269 1.269 28 C -0.115 4.115 29 H 0.159 0.841 30 H 0.137 0.863 31 H 0.152 0.848 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.046 0.954 37 H 0.089 0.911 38 H 0.406 0.594 39 H 0.410 0.590 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.399 0.601 43 H 0.280 0.720 44 H 0.109 0.891 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.637 23.910 -9.085 27.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.608 3.392 3 O -0.973 6.973 4 O -0.986 6.986 5 C -0.676 4.676 6 H 0.171 0.829 7 C -0.148 4.148 8 C -0.148 4.148 9 C -0.172 4.172 10 C 0.067 3.933 11 H 0.094 0.906 12 N -0.382 5.382 13 C 0.405 3.595 14 O -0.511 6.511 15 N -0.383 5.383 16 C 0.014 3.986 17 C 0.221 3.779 18 O -0.511 6.511 19 N -0.195 5.195 20 C -0.466 4.466 21 H 0.105 0.895 22 C -0.212 4.212 23 N -0.556 5.556 24 Si 0.820 3.180 25 H -0.195 1.195 26 H -0.197 1.197 27 H -0.194 1.194 28 C -0.154 4.154 29 H 0.177 0.823 30 H 0.155 0.845 31 H 0.170 0.830 32 H 0.111 0.889 33 H 0.130 0.870 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.107 0.893 38 H 0.243 0.757 39 H 0.247 0.753 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.233 0.767 43 H 0.089 0.911 44 H 0.127 0.873 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.698 24.293 -9.512 27.501 hybrid contribution -0.636 -1.640 0.487 1.825 sum -9.334 22.654 -9.024 26.110 Atomic orbital electron populations 1.30157 1.21664 1.14061 1.13614 1.07666 0.80204 0.74415 0.76885 1.93538 1.80959 1.35879 1.86886 1.93560 1.81252 1.67850 1.55971 1.30173 1.04382 1.13645 1.19357 0.82884 1.21636 1.01539 0.99369 0.92300 1.21410 0.94818 1.01543 0.97015 1.21962 0.96848 1.00737 0.97681 1.20725 0.98947 0.78761 0.94877 0.90551 1.45079 1.40415 1.09546 1.43182 1.15954 0.81780 0.80570 0.81212 1.90882 1.34063 1.79557 1.46646 1.44697 1.41010 1.07829 1.44748 1.20559 0.97270 0.85670 0.95129 1.20413 0.86517 0.86615 0.84339 1.90459 1.34584 1.85267 1.40816 1.41844 1.33409 1.08290 1.36005 1.19697 1.17664 0.86504 1.22765 0.89510 1.26136 0.96804 1.03264 0.94998 1.69675 1.27658 1.34128 1.24186 0.84929 0.78309 0.76345 0.78410 1.19519 1.19715 1.19396 1.21696 0.92128 1.04112 0.97487 0.82313 0.84471 0.82954 0.88854 0.86993 0.90169 0.92021 0.93488 0.89257 0.75676 0.75259 0.89312 0.89104 0.76731 0.91083 0.87278 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -1.18 10.01 113.37 1.14 -0.05 16 2 S 2.42 25.91 4.90 -56.49 -0.28 25.63 16 3 O -0.98 -17.25 18.06 -127.37 -2.30 -19.55 16 4 O -0.99 -20.24 18.10 -127.37 -2.31 -22.54 16 5 C -0.57 -4.46 2.45 30.59 0.07 -4.38 16 6 H 0.15 0.66 6.50 -2.39 -0.02 0.65 16 7 C -0.11 -0.56 4.91 30.60 0.15 -0.41 16 8 C -0.11 -1.10 5.77 30.60 0.18 -0.93 16 9 C -0.13 -2.05 5.60 30.60 0.17 -1.88 16 10 C 0.17 3.04 2.78 45.01 0.13 3.17 16 11 H 0.08 1.69 7.58 -2.39 -0.02 1.67 16 12 N -0.73 -14.88 4.24 -457.74 -1.94 -16.82 16 13 C 0.71 21.20 8.53 179.06 1.53 22.73 16 14 O -0.63 -23.45 16.00 -3.97 -0.06 -23.52 16 15 N -0.73 -23.00 5.53 -482.29 -2.67 -25.67 16 16 C 0.14 5.16 6.15 85.63 0.53 5.68 16 17 C 0.43 19.72 7.85 87.66 0.69 20.41 16 18 O -0.62 -31.44 15.24 -3.04 -0.05 -31.49 16 19 N -0.56 -27.88 5.29 -306.99 -1.62 -29.50 16 20 C -0.34 -18.39 9.68 84.04 0.81 -17.57 16 21 H 0.09 4.95 7.16 -2.91 -0.02 4.93 16 22 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 23 N -0.92 -48.52 13.05 21.66 0.28 -48.23 16 24 Si 1.00 41.39 29.55 68.60 2.03 43.41 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 27 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 28 C -0.12 -1.46 4.89 30.61 0.15 -1.31 16 29 H 0.16 -0.51 6.77 -2.39 -0.02 -0.53 16 30 H 0.14 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.15 -0.25 8.14 -2.39 -0.02 -0.27 16 32 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.11 -0.17 6.39 -2.39 -0.02 -0.19 16 34 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.73 7.60 -2.39 -0.02 0.71 16 36 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.41 6.18 6.88 -92.70 -0.64 5.54 16 39 H 0.41 12.48 7.45 -92.71 -0.69 11.79 16 40 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.09 3.15 8.14 -2.39 -0.02 3.14 16 42 H 0.40 19.14 7.90 -92.70 -0.73 18.41 16 43 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 44 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -82.03 379.37 -3.91 -85.95 By element: Atomic # 1 Polarization: 38.00 SS G_CDS: -1.01 Total: 37.00 kcal Atomic # 6 Polarization: 19.33 SS G_CDS: 6.01 Total: 25.33 kcal Atomic # 7 Polarization: -114.27 SS G_CDS: -5.95 Total: -120.22 kcal Atomic # 8 Polarization: -92.38 SS G_CDS: -4.71 Total: -97.10 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 16 Polarization: 25.91 SS G_CDS: -0.28 Total: 25.63 kcal Total: -82.03 -3.91 -85.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342602401.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.609 kcal (2) G-P(sol) polarization free energy of solvation -82.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds