Wall clock time and date at job start Wed Apr 1 2020 06:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42100 * 110.54626 * 2 1 4 4 O 1.42101 * 110.53678 * 223.24899 * 2 1 3 5 5 N 1.65597 * 104.45066 * 111.62686 * 2 1 3 6 6 C 1.46499 * 119.99926 * 64.71997 * 5 2 1 7 7 C 1.53790 * 113.61572 * 244.41461 * 6 5 2 8 8 C 1.53955 * 87.02056 * 220.04843 * 7 6 5 9 9 N 1.46497 * 113.53746 * 270.81103 * 8 7 6 10 10 C 1.34767 * 120.00030 * 252.49253 * 9 8 7 11 11 O 1.21349 * 120.00270 * 0.02562 * 10 9 8 12 12 C 1.49456 * 120.00131 * 179.97438 * 10 9 8 13 13 O 1.21339 * 120.00021 * 0.02562 * 12 10 9 14 14 N 1.34780 * 119.99931 * 180.02562 * 12 10 9 15 15 C 1.46497 * 119.99830 * 180.02562 * 14 12 10 16 16 C 1.53006 * 109.47113 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.46958 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.46721 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00169 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99925 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00170 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 119.99964 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47072 * 89.99812 * 22 20 18 24 24 H 1.48501 * 109.47032 * 209.99831 * 22 20 18 25 25 H 1.48500 * 109.47008 * 329.99805 * 22 20 18 26 26 C 1.53781 * 113.61560 * 146.80752 * 6 5 2 27 27 H 1.09004 * 109.46533 * 308.37804 * 1 2 3 28 28 H 1.09004 * 109.46969 * 68.37081 * 1 2 3 29 29 H 1.08990 * 109.47555 * 188.37683 * 1 2 3 30 30 H 0.97001 * 120.00224 * 245.00210 * 5 2 1 31 31 H 1.08996 * 112.85022 * 15.60611 * 6 5 2 32 32 H 1.08995 * 113.61040 * 334.56887 * 7 6 5 33 33 H 1.09004 * 113.61344 * 105.46893 * 7 6 5 34 34 H 1.09000 * 113.74328 * 139.94056 * 8 7 6 35 35 H 0.96999 * 120.00116 * 72.49623 * 9 8 7 36 36 H 0.96999 * 120.00054 * 0.02562 * 14 12 10 37 37 H 1.08999 * 109.47095 * 299.99999 * 15 14 12 38 38 H 1.08999 * 109.47327 * 59.99731 * 15 14 12 39 39 H 1.08999 * 109.47075 * 299.99932 * 16 15 14 40 40 H 1.09001 * 109.46795 * 59.99720 * 16 15 14 41 41 H 1.08999 * 109.47304 * 299.99954 * 17 16 15 42 42 H 1.09000 * 109.46984 * 60.00507 * 17 16 15 43 43 H 0.96996 * 120.00206 * 179.97438 * 21 20 18 44 44 H 1.09003 * 113.61447 * 254.52836 * 26 6 5 45 45 H 1.09005 * 113.61094 * 25.34958 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3125 -0.9693 -0.9118 5 7 2.2273 -0.5910 1.4907 6 6 1.8854 -1.9687 1.8529 7 6 0.8861 -2.0697 3.0176 8 6 1.7241 -3.2560 3.5281 9 7 1.2989 -4.5488 2.9860 10 6 0.6547 -5.4313 3.7750 11 8 0.4264 -5.1549 4.9343 12 6 0.2205 -6.7501 3.2218 13 8 0.4483 -7.0264 2.0625 14 7 -0.4243 -7.6324 4.0108 15 6 -0.8494 -8.9253 3.4687 16 6 -1.5531 -9.7306 4.5630 17 6 -1.9977 -11.0806 3.9966 18 6 -2.6902 -11.8740 5.0746 19 1 -2.8024 -11.4569 6.0645 20 6 -3.1815 -13.1319 4.7969 21 7 -3.7854 -13.8246 5.7377 22 14 -2.9881 -13.8531 3.0845 23 1 -1.7105 -14.6059 3.0059 24 1 -4.1214 -14.7705 2.8029 25 1 -2.9787 -12.7562 2.0836 26 6 2.9157 -2.6359 2.7794 27 1 -0.3632 0.6381 0.8057 28 1 -0.3633 0.3788 -0.9553 29 1 -0.3634 -1.0166 0.1497 30 1 2.6921 -0.0237 2.1256 31 1 1.6141 -2.5781 0.9909 32 1 0.9017 -1.2060 3.6822 33 1 -0.1209 -2.3472 2.7060 34 1 1.8489 -3.2713 4.6108 35 1 1.4811 -4.7697 2.0593 36 1 -0.6067 -7.4114 4.9374 37 1 -1.5369 -8.7629 2.6386 38 1 0.0226 -9.4758 3.1157 39 1 -0.8659 -9.8930 5.3933 40 1 -2.4252 -9.1798 4.9155 41 1 -2.6850 -10.9178 3.1664 42 1 -1.1258 -11.6315 3.6439 43 1 -4.1313 -14.7094 5.5422 44 1 3.5448 -3.3700 2.2759 45 1 3.4881 -1.9271 3.3778 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346119387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:28:21 Heat of formation + Delta-G solvation = -161.180679 kcal Electronic energy + Delta-G solvation = -27314.669174 eV Core-core repulsion = 23072.610838 eV Total energy + Delta-G solvation = -4242.058336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.88280 -40.50021 -39.17749 -38.13258 -37.18273 -37.01083 -35.49460 -34.99999 -33.30332 -32.90775 -30.26566 -29.35823 -26.75195 -26.64676 -24.98661 -23.78084 -22.27531 -21.48793 -20.79152 -20.50916 -19.51525 -18.84449 -18.56474 -18.10062 -17.48539 -17.14930 -17.12381 -16.72947 -16.47067 -16.20885 -16.06963 -15.91912 -15.21883 -14.97829 -14.77230 -14.66576 -14.18683 -14.01017 -13.94245 -13.81304 -13.72284 -13.58792 -13.41456 -13.19701 -13.10409 -12.90355 -12.73078 -12.68924 -12.53248 -12.21174 -11.91661 -11.89390 -11.77367 -11.59535 -11.44282 -11.32588 -10.74829 -10.71919 -10.36671 -10.28808 -10.19961 -8.27765 -6.32193 -0.65827 0.31523 1.28119 1.39142 1.40655 1.52266 1.79174 2.11156 2.37999 2.60901 2.89407 3.08125 3.27246 3.39452 3.40985 3.53833 3.82904 3.98317 4.01801 4.03503 4.17173 4.19030 4.33432 4.49315 4.68023 4.79565 4.82754 4.83377 4.87828 4.92840 4.96132 5.03010 5.06940 5.11409 5.19677 5.47103 5.50048 5.56632 5.66007 5.91897 6.15806 6.28742 6.33662 6.71658 6.76392 6.92513 7.32663 8.88719 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.024916 B = 0.001545 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.506139 B =18116.012553 C =18690.829709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 2.621 3.379 3 O -1.001 7.001 4 O -1.002 7.002 5 N -1.097 6.097 6 C 0.116 3.884 7 C -0.158 4.158 8 C 0.106 3.894 9 N -0.675 5.675 10 C 0.519 3.481 11 O -0.537 6.537 12 C 0.501 3.499 13 O -0.545 6.545 14 N -0.689 5.689 15 C 0.124 3.876 16 C -0.105 4.105 17 C -0.011 4.011 18 C -0.533 4.533 19 H 0.035 0.965 20 C 0.003 3.997 21 N -0.952 5.952 22 Si 0.950 3.050 23 H -0.268 1.268 24 H -0.287 1.287 25 H -0.243 1.243 26 C -0.139 4.139 27 H 0.151 0.849 28 H 0.140 0.860 29 H 0.143 0.857 30 H 0.428 0.572 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.420 0.580 36 H 0.419 0.581 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.025 0.975 42 H 0.023 0.977 43 H 0.266 0.734 44 H 0.084 0.916 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.455 32.893 -9.852 36.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.811 4.811 2 S 2.717 3.283 3 O -0.992 6.992 4 O -0.992 6.992 5 N -0.856 5.856 6 C 0.009 3.991 7 C -0.199 4.199 8 C 0.001 3.999 9 N -0.328 5.328 10 C 0.299 3.701 11 O -0.414 6.414 12 C 0.282 3.718 13 O -0.423 6.423 14 N -0.341 5.341 15 C 0.001 3.999 16 C -0.143 4.143 17 C -0.049 4.049 18 C -0.571 4.571 19 H 0.053 0.947 20 C -0.194 4.194 21 N -0.592 5.592 22 Si 0.773 3.227 23 H -0.193 1.193 24 H -0.213 1.213 25 H -0.166 1.166 26 C -0.179 4.179 27 H 0.169 0.831 28 H 0.158 0.842 29 H 0.161 0.839 30 H 0.265 0.735 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.100 0.900 34 H 0.126 0.874 35 H 0.258 0.742 36 H 0.256 0.744 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.042 0.958 43 H 0.074 0.926 44 H 0.103 0.897 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 12.914 32.908 -10.648 36.920 hybrid contribution -0.675 -0.824 0.317 1.112 sum 12.238 32.083 -10.332 35.859 Atomic orbital electron populations 1.30399 1.23928 1.13426 1.13328 1.04240 0.78850 0.72237 0.73007 1.93572 1.79833 1.39496 1.86286 1.93583 1.79012 1.62680 1.63924 1.55267 1.73792 1.20760 1.35796 1.22569 0.96867 0.81992 0.97719 1.24096 0.99056 0.98561 0.98139 1.22030 0.96837 0.81017 0.99993 1.45464 1.55972 1.15958 1.15386 1.19922 0.79179 0.85023 0.85967 1.90776 1.55077 1.78032 1.17474 1.20318 0.79504 0.85884 0.86103 1.90757 1.55743 1.78343 1.17502 1.45898 1.55756 1.16635 1.15822 1.21539 0.99408 0.81892 0.97053 1.21524 0.99766 0.95695 0.97294 1.19463 0.96160 0.93439 0.95857 1.21490 1.36684 1.01147 0.97801 0.94702 1.26023 0.94292 0.97496 1.01562 1.70068 1.40527 1.12945 1.35690 0.85667 0.78020 0.78940 0.80082 1.19270 1.21252 1.16646 1.23728 0.96204 1.00253 0.97671 0.83100 0.84161 0.83868 0.73543 0.86259 0.86062 0.90018 0.87360 0.74219 0.74429 0.90904 0.90938 0.91835 0.91778 0.95639 0.95823 0.92559 0.89721 0.85747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -0.98 10.88 113.37 1.23 0.25 16 2 S 2.62 23.09 6.07 -56.49 -0.34 22.75 16 3 O -1.00 -16.63 18.08 -127.65 -2.31 -18.94 16 4 O -1.00 -17.76 17.58 -127.65 -2.24 -20.00 16 5 N -1.10 -4.64 5.68 -167.19 -0.95 -5.59 16 6 C 0.12 0.55 4.18 45.52 0.19 0.74 16 7 C -0.16 -0.68 7.69 31.18 0.24 -0.44 16 8 C 0.11 0.91 4.33 45.58 0.20 1.11 16 9 N -0.67 -8.99 5.25 -441.09 -2.32 -11.30 16 10 C 0.52 10.55 7.89 87.27 0.69 11.24 16 11 O -0.54 -13.08 16.08 -3.24 -0.05 -13.13 16 12 C 0.50 12.27 7.89 87.27 0.69 12.96 16 13 O -0.55 -15.44 16.48 -3.21 -0.05 -15.49 16 14 N -0.69 -17.28 5.55 -464.41 -2.58 -19.85 16 15 C 0.12 3.56 5.67 86.38 0.49 4.05 16 16 C -0.10 -3.64 5.27 30.60 0.16 -3.47 16 17 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 18 C -0.53 -29.86 9.66 25.60 0.25 -29.61 16 19 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 20 C 0.00 0.17 5.47 84.65 0.46 0.63 16 21 N -0.95 -59.10 13.96 21.45 0.30 -58.80 16 22 Si 0.95 43.35 27.47 68.60 1.88 45.24 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 24 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 25 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 26 C -0.14 -0.66 7.61 31.12 0.24 -0.42 16 27 H 0.15 -0.30 8.14 -2.39 -0.02 -0.32 16 28 H 0.14 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.14 -0.09 8.14 -2.40 -0.02 -0.11 16 30 H 0.43 0.47 8.90 -96.74 -0.86 -0.39 16 31 H 0.12 0.58 7.76 -2.39 -0.02 0.56 16 32 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.11 1.16 7.46 -2.39 -0.02 1.14 16 35 H 0.42 4.81 8.17 -92.71 -0.76 4.05 16 36 H 0.42 9.64 7.94 -92.71 -0.74 8.90 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.06 2.19 8.14 -2.39 -0.02 2.18 16 40 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.03 1.09 7.20 -2.39 -0.02 1.07 16 42 H 0.02 1.00 7.57 -2.39 -0.02 0.98 16 43 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 44 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.12 0.17 8.14 -2.38 -0.02 0.15 16 Total: -1.00 -83.93 394.40 -5.07 -89.00 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -1.37 Total: 9.47 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 4.96 Total: -3.35 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -5.54 Total: -95.54 kcal Atomic # 8 Polarization: -62.91 SS G_CDS: -4.66 Total: -67.56 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.88 Total: 45.24 kcal Atomic # 16 Polarization: 23.09 SS G_CDS: -0.34 Total: 22.75 kcal Total: -83.93 -5.07 -89.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346119387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.176 kcal (2) G-P(sol) polarization free energy of solvation -83.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds