Wall clock time and date at job start Wed Apr 1 2020 05:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46498 * 119.99955 * 2 1 4 4 C 1.52992 * 109.47130 * 269.99796 * 3 2 1 5 5 N 1.46507 * 109.46978 * 180.02562 * 4 3 2 6 6 S 1.65598 * 119.99771 * 165.00401 * 5 4 3 7 7 C 1.81401 * 104.45200 * 64.99956 * 6 5 4 8 8 O 1.42108 * 104.27458 * 181.07019 * 6 5 4 9 9 O 1.42102 * 104.27731 * 308.92675 * 6 5 4 10 10 C 1.34777 * 119.99886 * 180.02562 * 2 1 3 11 11 O 1.21352 * 119.99951 * 181.60038 * 10 2 1 12 12 C 1.49446 * 119.99959 * 1.59080 * 10 2 1 13 13 O 1.21351 * 120.00389 * 353.50177 * 12 10 2 14 14 N 1.34783 * 119.99621 * 173.21408 * 12 10 2 15 15 C 1.46498 * 119.99515 * 185.02154 * 14 12 10 16 16 C 1.53003 * 109.46907 * 185.27050 * 15 14 12 17 17 C 1.50705 * 115.55162 * 55.52284 * 16 15 14 18 18 H 1.07998 * 119.99941 * 265.84842 * 17 16 15 19 19 C 1.37880 * 119.99714 * 85.84495 * 17 16 15 20 20 N 1.31516 * 119.99600 * 177.80283 * 19 17 16 21 21 Si 1.86799 * 120.00082 * 357.80618 * 19 17 16 22 22 H 1.48505 * 109.46834 * 90.80057 * 21 19 17 23 23 H 1.48495 * 109.46931 * 210.79974 * 21 19 17 24 24 H 1.48497 * 109.46999 * 330.80332 * 21 19 17 25 25 C 1.53002 * 117.49810 * 269.85367 * 16 15 14 26 26 C 1.53001 * 117.49931 * 201.19377 * 16 15 14 27 27 H 1.09003 * 109.47022 * 262.55324 * 1 2 3 28 28 H 1.08999 * 109.46942 * 22.55484 * 1 2 3 29 29 H 1.08994 * 109.47035 * 142.55443 * 1 2 3 30 30 H 1.09002 * 109.47022 * 30.00353 * 3 2 1 31 31 H 1.09006 * 109.46839 * 149.99910 * 3 2 1 32 32 H 1.08990 * 109.47791 * 299.99891 * 4 3 2 33 33 H 1.09000 * 109.47243 * 60.00757 * 4 3 2 34 34 H 0.96999 * 120.00223 * 344.99696 * 5 4 3 35 35 H 1.09001 * 109.47311 * 60.00048 * 7 6 5 36 36 H 1.09006 * 109.46993 * 179.97438 * 7 6 5 37 37 H 1.09001 * 109.46987 * 300.00027 * 7 6 5 38 38 H 0.96993 * 120.00141 * 5.02965 * 14 12 10 39 39 H 1.08996 * 109.47438 * 305.26753 * 15 14 12 40 40 H 1.09003 * 109.47351 * 65.27222 * 15 14 12 41 41 H 0.96996 * 119.99635 * 179.97438 * 20 19 17 42 42 H 1.09001 * 117.49845 * 0.02562 * 25 16 15 43 43 H 1.09005 * 117.49723 * 145.01393 * 25 16 15 44 44 H 1.09004 * 117.50000 * 214.97267 * 26 16 15 45 45 H 1.08998 * 117.49802 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4424 5 7 3.1856 2.9788 -1.4424 6 16 3.9211 3.5101 -2.8277 7 6 2.5521 3.8201 -3.9768 8 8 4.5407 4.7317 -2.4491 9 8 4.6947 2.3999 -3.2617 10 6 2.1389 -1.1672 -0.0005 11 8 3.3521 -1.1675 0.0288 12 6 1.3921 -2.4612 -0.0370 13 8 0.1819 -2.4661 0.0528 14 7 2.0623 -3.6223 -0.1755 15 6 1.3257 -4.8802 -0.3219 16 6 2.3112 -6.0505 -0.3288 17 6 3.2295 -6.1341 0.8632 18 1 4.2129 -5.6900 0.8195 19 6 2.8139 -6.7775 2.0097 20 7 3.6308 -6.8882 3.0344 21 14 1.0907 -7.4921 2.1074 22 1 1.1125 -8.9021 1.6419 23 1 0.6131 -7.4419 3.5125 24 1 0.1770 -6.7003 1.2453 25 6 2.8680 -6.4971 -1.6821 26 6 1.8411 -7.3663 -0.9520 27 1 -0.3633 -0.1332 1.0190 28 1 -0.3633 0.9491 -0.3942 29 1 -0.3633 -0.8159 -0.6248 30 1 1.6085 2.0283 0.5139 31 1 3.1500 1.1383 0.5139 32 1 3.0416 0.9508 -1.9563 33 1 1.5002 1.8408 -1.9563 34 1 3.2401 3.5075 -0.6310 35 1 1.8869 4.5734 -3.5546 36 1 2.9491 4.1779 -4.9268 37 1 1.9976 2.8958 -4.1392 38 1 3.0322 -3.6252 -0.1782 39 1 0.6322 -4.9942 0.5112 40 1 0.7690 -4.8684 -1.2590 41 1 3.3383 -7.3405 3.8411 42 1 2.5325 -5.9569 -2.5675 43 1 3.8984 -6.8517 -1.7102 44 1 2.1962 -8.2925 -0.5001 45 1 0.8295 -7.3984 -1.3567 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347566829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:45 Heat of formation + Delta-G solvation = -94.607162 kcal Electronic energy + Delta-G solvation = -28656.552444 eV Core-core repulsion = 24417.380952 eV Total energy + Delta-G solvation = -4239.171492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.61784 -38.53717 -37.48032 -37.11723 -36.74634 -36.29122 -35.04847 -33.45611 -32.16229 -29.96287 -29.51211 -27.51763 -26.61789 -25.51562 -24.22188 -22.10590 -21.67754 -20.02119 -19.70826 -19.10277 -18.03237 -17.61755 -17.08448 -16.85982 -16.56549 -16.32920 -15.94296 -15.40272 -15.14672 -15.11795 -14.93660 -14.43617 -14.14163 -13.86071 -13.75035 -13.62860 -13.22925 -13.07219 -12.87602 -12.75325 -12.62018 -12.47535 -12.46080 -12.33609 -12.23077 -12.09791 -11.88268 -11.42179 -11.19307 -11.12398 -10.73904 -10.57215 -10.25302 -9.96218 -9.73038 -9.27988 -9.18783 -8.97096 -8.70156 -8.62532 -8.43048 -6.17675 -4.23230 -0.15254 1.65966 2.14392 2.58000 3.25392 3.35549 3.37049 3.40414 3.44994 3.69805 3.79414 4.25840 4.36243 4.40288 4.50776 4.52322 4.69328 4.93571 4.94168 4.97706 5.10428 5.14478 5.18400 5.38364 5.51053 5.60358 5.63212 5.85753 5.93544 6.01316 6.08931 6.20347 6.35715 6.39547 6.50621 6.65547 6.79852 6.88654 6.98838 7.04097 7.62023 7.63728 8.01375 8.36679 8.41939 8.84087 9.44388 10.93546 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.018758 B = 0.002279 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.376077 B =12283.785731 C =12574.415376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.595 5.595 3 C 0.108 3.892 4 C 0.097 3.903 5 N -1.117 6.117 6 S 2.616 3.384 7 C -0.674 4.674 8 O -0.960 6.960 9 O -0.950 6.950 10 C 0.506 3.494 11 O -0.507 6.507 12 C 0.499 3.501 13 O -0.536 6.536 14 N -0.661 5.661 15 C 0.149 3.851 16 C -0.019 4.019 17 C -0.494 4.494 18 H 0.080 0.920 19 C 0.081 3.919 20 N -0.892 5.892 21 Si 0.878 3.122 22 H -0.277 1.277 23 H -0.293 1.293 24 H -0.256 1.256 25 C -0.177 4.177 26 C -0.191 4.191 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.419 0.581 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.418 0.582 39 H 0.074 0.926 40 H 0.050 0.950 41 H 0.266 0.734 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.204 20.955 -11.447 25.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.331 5.331 3 C -0.016 4.016 4 C -0.031 4.031 5 N -0.877 5.877 6 S 2.707 3.293 7 C -0.823 4.823 8 O -0.950 6.950 9 O -0.939 6.939 10 C 0.289 3.711 11 O -0.381 6.381 12 C 0.279 3.721 13 O -0.415 6.415 14 N -0.311 5.311 15 C 0.026 3.974 16 C -0.021 4.021 17 C -0.531 4.531 18 H 0.098 0.902 19 C -0.123 4.123 20 N -0.528 5.528 21 Si 0.706 3.294 22 H -0.203 1.203 23 H -0.220 1.220 24 H -0.181 1.181 25 C -0.214 4.214 26 C -0.228 4.228 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.122 0.878 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.253 0.747 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.256 0.744 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.453 20.821 -11.492 24.923 hybrid contribution -1.289 -0.208 0.437 1.377 sum -8.743 20.613 -11.055 24.971 Atomic orbital electron populations 1.22326 0.77322 1.03398 1.03932 1.47579 1.08236 1.04627 1.72630 1.21624 0.99310 0.85067 0.95644 1.21716 0.96387 0.85285 0.99708 1.55462 1.72522 1.31386 1.28294 1.04722 0.75613 0.74107 0.74820 1.30533 1.21657 1.12076 1.18076 1.93627 1.73396 1.46759 1.81200 1.93659 1.65854 1.52465 1.81963 1.20518 0.87649 0.85389 0.77521 1.90803 1.13318 1.87122 1.46837 1.19833 0.87570 0.85240 0.79503 1.90641 1.13560 1.86905 1.50444 1.45739 1.12260 1.05312 1.67777 1.21372 0.94006 0.81881 1.00107 1.19597 0.97441 0.90822 0.94193 1.20201 1.00963 1.37169 0.94734 0.90172 1.24982 0.97078 0.94951 0.95255 1.69893 1.35801 1.42355 1.04762 0.86889 0.85474 0.80007 0.77030 1.20318 1.22011 1.18052 1.22878 0.98535 1.04636 0.95379 1.22956 0.97676 0.96527 1.05688 0.91950 0.91895 0.87778 0.89275 0.88410 0.89348 0.91437 0.74682 0.85268 0.85283 0.85362 0.74404 0.90809 0.93174 0.92432 0.90786 0.89237 0.89040 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.68 9.39 59.85 0.56 1.24 16 2 N -0.60 -6.76 2.87 -182.08 -0.52 -7.28 16 3 C 0.11 0.91 5.53 -4.05 -0.02 0.89 16 4 C 0.10 0.70 6.46 -4.04 -0.03 0.68 16 5 N -1.12 -6.74 5.89 -10.62 -0.06 -6.80 16 6 S 2.62 18.86 6.10 -107.50 -0.66 18.20 16 7 C -0.67 -2.29 10.89 101.05 1.10 -1.19 16 8 O -0.96 -9.97 18.08 -57.54 -1.04 -11.01 16 9 O -0.95 -11.42 17.50 -57.54 -1.01 -12.43 16 10 C 0.51 7.88 7.74 -11.59 -0.09 7.79 16 11 O -0.51 -9.14 16.06 5.50 0.09 -9.05 16 12 C 0.50 8.69 7.75 -11.58 -0.09 8.60 16 13 O -0.54 -9.57 13.20 5.50 0.07 -9.50 16 14 N -0.66 -12.54 5.35 -60.73 -0.32 -12.86 16 15 C 0.15 2.98 5.33 -4.04 -0.02 2.96 16 16 C -0.02 -0.41 0.94 -155.66 -0.15 -0.56 16 17 C -0.49 -12.91 8.85 -34.44 -0.30 -13.21 16 18 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 19 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 20 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 21 Si 0.88 20.93 25.07 -169.99 -4.26 16.67 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.26 -5.74 5.45 56.52 0.31 -5.44 16 25 C -0.18 -3.33 9.93 -26.69 -0.27 -3.59 16 26 C -0.19 -3.76 7.73 -26.69 -0.21 -3.97 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.36 8.02 -51.93 -0.42 -0.05 16 29 H 0.10 1.17 5.63 -51.93 -0.29 0.88 16 30 H 0.09 0.47 8.07 -51.93 -0.42 0.05 16 31 H 0.10 1.00 7.40 -51.93 -0.38 0.61 16 32 H 0.09 0.87 7.69 -51.93 -0.40 0.47 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.42 1.81 8.62 -34.47 -0.30 1.51 16 35 H 0.13 0.23 8.14 -51.92 -0.42 -0.20 16 36 H 0.13 0.33 8.14 -51.92 -0.42 -0.10 16 37 H 0.13 0.33 8.14 -51.92 -0.42 -0.09 16 38 H 0.42 8.16 7.65 -40.82 -0.31 7.85 16 39 H 0.07 1.61 6.10 -51.93 -0.32 1.29 16 40 H 0.05 0.90 8.10 -51.93 -0.42 0.48 16 41 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 44 H 0.09 1.91 7.42 -51.93 -0.39 1.52 16 45 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 385.94 15.07 5.82 5.82 Total: -1.00 -36.67 385.94 -7.41 -44.07 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -6.68 Total: 8.00 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 0.39 Total: 1.75 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.14 Total: -52.53 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -1.89 Total: -41.98 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.26 Total: 16.67 kcal Atomic # 16 Polarization: 18.86 SS G_CDS: -0.66 Total: 18.20 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.67 -7.41 -44.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347566829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.533 kcal (2) G-P(sol) polarization free energy of solvation -36.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds