Wall clock time and date at job start Wed Apr 1 2020 06:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35553 * 116.99790 * 2 1 4 4 C 1.39190 * 120.43908 * 179.97438 * 3 2 1 5 5 C 1.39188 * 118.41120 * 180.02562 * 4 3 2 6 6 O 1.35552 * 120.44533 * 180.02562 * 5 4 3 7 7 C 1.42896 * 117.00368 * 179.97438 * 6 5 4 8 8 N 1.32739 * 119.11406 * 0.02562 * 5 4 3 9 9 C 1.32425 * 120.81391 * 359.97438 * 8 5 4 10 10 C 1.48549 * 119.13630 * 179.97438 * 9 8 5 11 11 O 1.21468 * 119.99781 * 353.43511 * 10 9 8 12 12 N 1.34772 * 120.00292 * 173.43306 * 10 9 8 13 13 C 1.46496 * 120.00351 * 185.46718 * 12 10 9 14 14 C 1.50700 * 109.47098 * 270.00291 * 13 12 10 15 15 H 1.08000 * 120.00184 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00169 * 180.02562 * 14 13 12 17 17 N 1.31521 * 120.00444 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00031 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46945 * 90.00543 * 18 16 14 20 20 H 1.48494 * 109.47341 * 210.00413 * 18 16 14 21 21 H 1.48504 * 109.47040 * 330.00938 * 18 16 14 22 22 C 1.46504 * 119.99988 * 5.46635 * 12 10 9 23 23 C 1.50703 * 109.47072 * 269.46522 * 22 12 10 24 24 C 1.34516 * 125.78730 * 89.71439 * 23 22 12 25 25 C 1.41379 * 106.83872 * 179.88853 * 24 23 22 26 26 C 1.34511 * 106.84024 * 0.37244 * 25 24 23 27 27 O 1.34297 * 108.42300 * 359.77216 * 26 25 24 28 28 N 1.32423 * 121.73453 * 0.28148 * 9 8 5 29 29 H 1.09001 * 109.47663 * 300.00706 * 1 2 3 30 30 H 1.09004 * 109.47147 * 60.00299 * 1 2 3 31 31 H 1.09001 * 109.47621 * 179.97438 * 1 2 3 32 32 H 1.08004 * 120.79845 * 0.02562 * 4 3 2 33 33 H 1.08998 * 109.47364 * 300.00153 * 7 6 5 34 34 H 1.09003 * 109.46809 * 59.99225 * 7 6 5 35 35 H 1.09002 * 109.47572 * 179.97438 * 7 6 5 36 36 H 1.09009 * 109.46948 * 29.99873 * 13 12 10 37 37 H 1.08996 * 109.47713 * 149.99883 * 13 12 10 38 38 H 0.96990 * 120.00307 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.46856 * 29.46386 * 22 12 10 40 40 H 1.08998 * 109.47111 * 149.46441 * 22 12 10 41 41 H 1.08004 * 126.57904 * 0.02695 * 24 23 22 42 42 H 1.07998 * 126.58061 * 180.16359 * 25 24 23 43 43 H 1.08006 * 125.78650 * 179.74825 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2078 0.0000 4 6 3.4337 1.2914 0.0005 5 6 4.0213 2.5531 0.0011 6 8 5.3707 2.6825 0.0011 7 6 5.8950 4.0117 0.0011 8 7 3.2427 3.6282 0.0016 9 6 1.9237 3.5104 0.0010 10 6 1.0879 4.7385 0.0022 11 8 1.6101 5.8284 0.1239 12 7 -0.2498 4.6434 -0.1318 13 6 -1.0621 5.8566 -0.2510 14 6 -1.4851 6.3148 1.1209 15 1 -1.1798 5.7577 1.9943 16 6 -2.2628 7.4446 1.2611 17 7 -2.6325 7.8443 2.4583 18 14 -2.7917 8.4078 -0.2496 19 1 -4.0879 7.8791 -0.7449 20 1 -2.9453 9.8414 0.1061 21 1 -1.7623 8.2686 -1.3108 22 6 -0.8916 3.3267 -0.1582 23 6 -0.9790 2.8389 -1.5814 24 6 -0.0466 2.1112 -2.2222 25 6 -0.5368 1.8752 -3.5271 26 6 -1.7357 2.4798 -3.6083 27 8 -1.9984 3.0618 -2.4269 28 7 1.3301 2.3267 0.0056 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 4.0414 0.3985 0.0005 33 1 5.5504 4.5383 -0.8889 34 1 5.5502 4.5383 0.8910 35 1 6.9844 3.9727 0.0015 36 1 -0.4762 6.6405 -0.7313 37 1 -1.9464 5.6443 -0.8519 38 1 -3.1792 8.6393 2.5570 39 1 -0.3030 2.6237 0.4313 40 1 -1.8944 3.4028 0.2621 41 1 0.8947 1.7706 -1.8168 42 1 -0.0420 1.3194 -4.3098 43 1 -2.3779 2.4949 -4.4766 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001442497362.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:44 Heat of formation + Delta-G solvation = -10.062126 kcal Electronic energy + Delta-G solvation = -31917.498030 eV Core-core repulsion = 27546.548735 eV Total energy + Delta-G solvation = -4370.949296 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.60303 -42.82440 -40.74692 -40.35844 -38.79653 -37.22911 -35.00333 -34.12233 -33.77458 -33.17041 -31.71252 -30.17959 -29.00301 -27.94510 -27.15126 -26.50758 -24.57457 -24.15289 -22.63876 -21.88679 -21.42595 -19.87209 -19.57142 -19.23281 -18.58826 -18.19543 -17.65425 -17.50370 -17.25929 -16.94531 -16.83702 -16.65110 -16.47782 -15.91239 -15.78532 -15.35564 -15.17406 -15.09527 -14.66011 -14.41924 -14.23325 -13.77131 -13.71774 -13.59348 -13.20918 -13.01718 -12.93518 -12.87950 -12.78762 -12.50899 -12.37561 -12.10812 -12.08581 -11.77634 -11.12371 -10.88804 -10.82668 -10.68349 -10.54571 -10.19221 -9.76848 -9.36536 -8.34259 -6.40067 -0.79357 -0.10392 0.73005 1.26040 1.32396 1.35938 1.44771 1.46279 1.59440 1.78778 2.06383 2.22171 2.30685 2.52905 2.72288 2.94923 3.00696 3.52290 3.83789 3.85937 3.98319 4.14844 4.17053 4.35398 4.36180 4.38164 4.41535 4.43975 4.44974 4.63993 4.74923 4.78668 4.85606 4.89092 4.94397 5.03462 5.22843 5.35153 5.40711 5.42120 5.62950 5.73361 5.95895 6.15922 6.21837 6.33363 6.57188 6.60788 6.96161 7.23868 8.82290 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.009763 B = 0.004673 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.329388 B = 5990.240331 C = 7653.594536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.281 6.281 3 C 0.375 3.625 4 C -0.233 4.233 5 C 0.376 3.624 6 O -0.290 6.290 7 C 0.032 3.968 8 N -0.562 5.562 9 C 0.364 3.636 10 C 0.568 3.432 11 O -0.541 6.541 12 N -0.567 5.567 13 C 0.229 3.771 14 C -0.536 4.536 15 H 0.035 0.965 16 C 0.019 3.981 17 N -0.939 5.939 18 Si 0.941 3.059 19 H -0.252 1.252 20 H -0.278 1.278 21 H -0.258 1.258 22 C 0.162 3.838 23 C -0.031 4.031 24 C -0.198 4.198 25 C -0.228 4.228 26 C -0.037 4.037 27 O -0.193 6.193 28 N -0.554 5.554 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.136 0.864 32 H 0.196 0.804 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.141 0.859 36 H 0.025 0.975 37 H 0.049 0.951 38 H 0.270 0.730 39 H 0.169 0.831 40 H 0.086 0.914 41 H 0.144 0.856 42 H 0.169 0.831 43 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.399 -20.259 -11.728 25.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.185 6.185 3 C 0.193 3.807 4 C -0.256 4.256 5 C 0.193 3.807 6 O -0.194 6.194 7 C -0.062 4.062 8 N -0.298 5.298 9 C 0.093 3.907 10 C 0.352 3.648 11 O -0.415 6.415 12 N -0.297 5.297 13 C 0.108 3.892 14 C -0.575 4.575 15 H 0.054 0.946 16 C -0.180 4.180 17 N -0.579 5.579 18 Si 0.763 3.237 19 H -0.176 1.176 20 H -0.203 1.203 21 H -0.182 1.182 22 C 0.040 3.960 23 C -0.082 4.082 24 C -0.218 4.218 25 C -0.247 4.247 26 C -0.104 4.104 27 O -0.089 6.089 28 N -0.293 5.293 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.154 0.846 32 H 0.213 0.787 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.159 0.841 36 H 0.043 0.957 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.185 0.815 40 H 0.105 0.895 41 H 0.161 0.839 42 H 0.186 0.814 43 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 9.149 -19.095 -11.464 24.078 hybrid contribution -0.001 0.562 -0.125 0.575 sum 9.149 -18.533 -11.589 23.695 Atomic orbital electron populations 1.23754 0.74887 1.06255 1.03787 1.86291 1.24805 1.21297 1.86100 1.19983 0.89181 0.85154 0.86419 1.21056 0.92613 0.98590 1.13386 1.19876 0.85469 0.88431 0.86970 1.86242 1.13610 1.33156 1.86343 1.23239 1.00805 0.79620 1.02530 1.67817 1.05987 1.34237 1.21737 1.21710 0.86926 0.90266 0.91757 1.17715 0.82279 0.86519 0.78312 1.90754 1.72890 1.28500 1.49389 1.47822 1.04880 1.08581 1.68432 1.19481 0.90525 0.83000 0.96232 1.21407 1.32238 1.11466 0.92343 0.94638 1.25730 0.95324 0.97661 0.99241 1.70025 1.37828 1.25697 1.24352 0.85814 0.79961 0.78273 0.79611 1.17582 1.20340 1.18182 1.21126 1.00976 0.84516 0.89383 1.22849 0.88526 1.02774 0.94004 1.21951 1.00791 1.04014 0.95009 1.22158 0.97414 1.06888 0.98259 1.24821 0.99535 0.97955 0.88096 1.84082 1.42043 1.60882 1.21886 1.68510 1.38842 0.98501 1.23446 0.91786 0.90833 0.84644 0.78671 0.92511 0.92809 0.84118 0.95678 0.93281 0.92110 0.81493 0.89547 0.83884 0.81363 0.74720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.88 113.37 1.12 1.23 16 2 O -0.28 -5.29 10.49 -88.58 -0.93 -6.22 16 3 C 0.38 8.73 6.10 84.78 0.52 9.25 16 4 C -0.23 -4.94 10.09 22.73 0.23 -4.71 16 5 C 0.38 9.92 7.52 84.78 0.64 10.56 16 6 O -0.29 -6.46 10.49 -88.58 -0.93 -7.39 16 7 C 0.03 0.63 10.41 113.37 1.18 1.81 16 8 N -0.56 -19.20 9.07 -302.17 -2.74 -21.94 16 9 C 0.36 13.20 7.46 137.71 1.03 14.22 16 10 C 0.57 25.84 7.69 87.00 0.67 26.50 16 11 O -0.54 -28.97 16.51 -3.61 -0.06 -29.03 16 12 N -0.57 -25.10 2.44 -833.11 -2.03 -27.14 16 13 C 0.23 11.60 4.19 85.63 0.36 11.96 16 14 C -0.54 -31.85 9.94 25.60 0.25 -31.59 16 15 H 0.04 2.34 8.06 -2.91 -0.02 2.32 16 16 C 0.02 1.14 5.47 84.65 0.46 1.60 16 17 N -0.94 -59.21 13.96 21.45 0.30 -58.92 16 18 Si 0.94 44.70 27.47 68.60 1.88 46.59 16 19 H -0.25 -11.02 7.11 99.48 0.71 -10.31 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.26 -11.91 6.54 99.48 0.65 -11.26 16 22 C 0.16 5.66 5.58 85.63 0.48 6.14 16 23 C -0.03 -0.95 6.41 24.83 0.16 -0.79 16 24 C -0.20 -5.30 7.10 22.19 0.16 -5.15 16 25 C -0.23 -5.03 10.91 22.19 0.24 -4.79 16 26 C -0.04 -0.80 12.09 66.97 0.81 0.00 16 27 O -0.19 -5.84 10.65 -2.40 -0.03 -5.87 16 28 N -0.55 -16.09 2.42 -302.16 -0.73 -16.82 16 29 H 0.06 1.08 7.45 -2.39 -0.02 1.06 16 30 H 0.07 1.37 4.09 -2.38 -0.01 1.36 16 31 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.20 2.77 8.06 -2.91 -0.02 2.74 16 33 H 0.06 1.22 8.12 -2.39 -0.02 1.20 16 34 H 0.05 1.21 8.12 -2.39 -0.02 1.19 16 35 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.03 1.36 6.56 -2.38 -0.02 1.35 16 37 H 0.05 2.32 7.50 -2.39 -0.02 2.31 16 38 H 0.27 15.77 8.31 -92.72 -0.77 15.00 16 39 H 0.17 5.26 3.58 -32.37 -0.12 5.14 16 40 H 0.09 3.08 8.08 -2.39 -0.02 3.06 16 41 H 0.14 3.80 4.01 -2.91 -0.01 3.79 16 42 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 43 H 0.24 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -79.26 359.40 3.95 -75.31 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.91 Total: 15.18 kcal Atomic # 6 Polarization: 27.94 SS G_CDS: 8.30 Total: 36.24 kcal Atomic # 7 Polarization: -119.61 SS G_CDS: -5.20 Total: -124.81 kcal Atomic # 8 Polarization: -46.56 SS G_CDS: -1.94 Total: -48.50 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.59 kcal Total: -79.26 3.95 -75.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442497362.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.244 kcal (2) G-P(sol) polarization free energy of solvation -79.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds