Wall clock time and date at job start Wed Apr 1 2020 05:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46502 * 120.00028 * 2 1 4 4 C 1.50702 * 109.47008 * 297.68634 * 3 2 1 5 5 H 1.08000 * 119.99876 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99617 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99738 * 179.97438 * 6 4 3 8 8 Si 1.86792 * 120.00221 * 359.97438 * 6 4 3 9 9 H 1.48507 * 109.46758 * 90.00392 * 8 6 4 10 10 H 1.48503 * 109.47341 * 210.00258 * 8 6 4 11 11 H 1.48493 * 109.47444 * 330.00460 * 8 6 4 12 12 S 1.65593 * 119.99790 * 179.97438 * 2 1 3 13 13 O 1.42104 * 106.40679 * 299.34658 * 12 2 1 14 14 O 1.42107 * 106.40299 * 166.43064 * 12 2 1 15 15 N 1.65602 * 107.21945 * 52.88921 * 12 2 1 16 16 C 1.47238 * 121.14147 * 250.76634 * 15 12 2 17 17 C 1.53079 * 109.26651 * 127.14266 * 16 15 12 18 18 C 1.53288 * 109.80093 * 54.08142 * 17 16 15 19 19 C 1.52686 * 108.89778 * 299.90673 * 18 17 16 20 20 H 1.08998 * 107.17427 * 304.12161 * 19 18 17 21 21 O 1.43134 * 111.28258 * 186.42385 * 19 18 17 22 22 C 1.43566 * 114.56568 * 267.47228 * 21 19 18 23 23 C 1.51475 * 111.80205 * 272.66516 * 22 21 19 24 24 N 1.42555 * 119.10035 * 35.82021 * 23 22 21 25 25 C 1.33131 * 124.87321 * 24.53850 * 24 23 22 26 26 O 1.21284 * 119.17172 * 179.49344 * 25 24 23 27 27 C 1.46680 * 121.13860 * 70.79549 * 15 12 2 28 28 H 1.08996 * 108.45477 * 115.63748 * 27 15 12 29 29 H 1.08994 * 109.47359 * 270.00257 * 1 2 3 30 30 H 1.09005 * 109.47159 * 29.99985 * 1 2 3 31 31 H 1.09003 * 109.47082 * 149.99743 * 1 2 3 32 32 H 1.09001 * 109.46694 * 57.68005 * 3 2 1 33 33 H 1.08997 * 109.46610 * 177.68518 * 3 2 1 34 34 H 0.96998 * 120.00339 * 179.97438 * 7 6 4 35 35 H 1.09006 * 109.50508 * 7.20895 * 16 15 12 36 36 H 1.09001 * 109.54115 * 247.10136 * 16 15 12 37 37 H 1.09011 * 109.40380 * 174.16103 * 17 16 15 38 38 H 1.09001 * 109.40991 * 293.99602 * 17 16 15 39 39 H 1.09006 * 109.56489 * 59.80995 * 18 17 16 40 40 H 1.09001 * 109.56922 * 180.15699 * 18 17 16 41 41 H 1.08998 * 109.01625 * 33.26278 * 22 21 19 42 42 H 1.08996 * 109.01898 * 152.06532 * 22 21 19 43 43 H 1.09005 * 107.50417 * 158.27324 * 23 22 21 44 44 H 1.08997 * 107.50746 * 273.41734 * 23 22 21 45 45 H 0.97004 * 117.59295 * 205.21113 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 1.8770 2.0338 -1.2582 5 1 1.1954 1.6169 -1.9848 6 6 2.4538 3.2661 -1.4814 7 7 2.1745 3.9336 -2.5797 8 14 3.6320 3.9874 -0.2242 9 1 5.0179 3.5582 -0.5414 10 1 3.5516 5.4697 -0.2639 11 1 3.2634 3.5078 1.1319 12 16 2.2929 -1.4341 0.0006 13 8 1.9150 -2.1152 1.1892 14 8 3.6412 -1.1192 -0.3193 15 7 1.7115 -2.3364 -1.2604 16 6 0.8848 -3.5317 -1.0240 17 6 -0.4104 -3.4179 -1.8319 18 6 -0.0814 -3.1645 -3.3074 19 6 0.7071 -1.8620 -3.4217 20 1 0.1072 -1.0806 -2.9554 21 8 0.9142 -1.4984 -4.7905 22 6 2.1446 -1.9761 -5.3554 23 6 3.2878 -1.0134 -5.1091 24 7 3.3376 -0.2966 -3.8778 25 6 2.7678 -0.6940 -2.7422 26 8 2.8835 -0.0057 -1.7503 27 6 2.0029 -1.9726 -2.6512 28 1 2.6025 -2.7661 -3.0970 29 1 -0.3634 0.0000 1.0276 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 1.9033 1.8581 0.8685 33 1 3.2684 1.0699 0.0415 34 1 2.5799 4.8006 -2.7367 35 1 0.6465 -3.6053 0.0372 36 1 1.4319 -4.4210 -1.3367 37 1 -0.9765 -4.3451 -1.7411 38 1 -1.0063 -2.5906 -1.4464 39 1 0.5161 -3.9896 -3.6951 40 1 -1.0061 -3.0814 -3.8786 41 1 2.3897 -2.9399 -4.9093 42 1 2.0153 -2.1063 -6.4298 43 1 4.2164 -1.5774 -5.1980 44 1 3.2778 -0.2794 -5.9148 45 1 3.8142 0.5482 -3.8687 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464347919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:45 Heat of formation + Delta-G solvation = -107.906553 kcal Electronic energy + Delta-G solvation = -33324.630116 eV Core-core repulsion = 29084.881919 eV Total energy + Delta-G solvation = -4239.748197 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.05971 -39.49903 -38.24228 -37.88031 -37.15411 -36.66245 -35.67576 -34.28169 -33.26113 -31.93894 -30.10844 -29.87915 -26.85680 -26.72833 -24.98722 -23.63574 -23.34668 -21.79004 -21.06709 -19.77612 -19.17782 -18.62264 -18.47629 -18.32190 -17.90170 -17.31745 -16.56583 -16.41005 -16.26362 -15.99412 -15.86939 -15.41378 -15.06598 -14.91642 -14.64991 -14.50823 -14.33919 -14.31965 -14.13360 -13.87408 -13.64450 -13.16149 -13.13548 -12.99590 -12.86803 -12.71532 -12.57459 -12.38070 -12.28061 -12.13718 -11.98302 -11.94926 -11.77953 -11.57151 -11.49032 -10.81467 -10.62454 -10.45137 -10.09941 -9.57817 -9.42044 -8.12188 -5.99658 -0.22494 1.33884 1.37338 1.45508 1.77209 1.81161 2.42788 2.43537 2.73329 2.73938 3.24140 3.32650 3.48525 3.69968 3.80874 3.95378 3.96471 4.07381 4.12957 4.13611 4.20640 4.34607 4.58528 4.61471 4.64275 4.69939 4.74707 4.78791 4.86415 4.93654 4.96531 5.00984 5.07106 5.15019 5.19848 5.39862 5.46504 5.51128 5.71170 5.92355 6.07632 6.15003 6.53752 6.58174 6.86798 7.47339 7.51301 9.03342 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.012093 B = 0.006901 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.927832 B = 4056.502260 C = 5277.691053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.987 5.987 3 C 0.252 3.748 4 C -0.440 4.440 5 H 0.045 0.955 6 C 0.010 3.990 7 N -0.946 5.946 8 Si 0.917 3.083 9 H -0.282 1.282 10 H -0.284 1.284 11 H -0.258 1.258 12 S 2.817 3.183 13 O -1.024 7.024 14 O -1.004 7.004 15 N -0.989 5.989 16 C 0.104 3.896 17 C -0.130 4.130 18 C -0.122 4.122 19 C 0.087 3.913 20 H 0.065 0.935 21 O -0.380 6.380 22 C 0.041 3.959 23 C 0.069 3.931 24 N -0.701 5.701 25 C 0.448 3.552 26 O -0.479 6.479 27 C 0.128 3.872 28 H 0.119 0.881 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.007 0.993 33 H 0.032 0.968 34 H 0.258 0.742 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.138 0.862 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.219 -19.921 -6.641 21.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.827 5.827 3 C 0.127 3.873 4 C -0.480 4.480 5 H 0.063 0.937 6 C -0.185 4.185 7 N -0.590 5.590 8 Si 0.744 3.256 9 H -0.208 1.208 10 H -0.209 1.209 11 H -0.183 1.183 12 S 2.827 3.173 13 O -1.007 7.007 14 O -0.989 6.989 15 N -0.832 5.832 16 C -0.019 4.019 17 C -0.169 4.169 18 C -0.160 4.160 19 C 0.027 3.973 20 H 0.083 0.917 21 O -0.298 6.298 22 C -0.036 4.036 23 C -0.056 4.056 24 N -0.353 5.353 25 C 0.233 3.767 26 O -0.354 6.354 27 C 0.018 3.982 28 H 0.136 0.864 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.024 0.976 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.136 0.864 38 H 0.081 0.919 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.155 0.845 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -3.690 -19.796 -5.664 20.918 hybrid contribution 0.916 1.609 0.120 1.856 sum -2.774 -18.187 -5.544 19.214 Atomic orbital electron populations 1.21387 0.79447 1.02784 1.01190 1.57205 1.14650 1.21227 1.89579 1.18923 0.91896 0.81352 0.95133 1.21096 1.23790 0.99786 1.03329 0.93714 1.25392 0.98452 0.97753 0.96941 1.70013 1.46846 1.14753 1.27395 0.86180 0.80397 0.77530 0.81527 1.20775 1.20936 1.18271 1.00697 0.73168 0.71219 0.72199 1.93510 1.85151 1.75346 1.46728 1.93569 1.38161 1.83303 1.83827 1.57905 1.68427 1.40334 1.16488 1.21949 0.91874 0.85973 1.02135 1.21980 0.96481 1.04531 0.93867 1.21931 1.01182 0.95407 0.97481 1.21919 0.93766 0.99731 0.81869 0.91654 1.88262 1.39630 1.77624 1.24236 1.23077 0.82518 0.96072 1.01930 1.21143 1.00622 0.98207 0.85632 1.44077 1.55820 1.26351 1.09077 1.20290 0.82231 0.88726 0.85468 1.91128 1.57773 1.53410 1.33093 1.20440 0.97583 0.96059 0.84114 0.86378 0.92610 0.92043 0.90889 0.97567 0.95042 0.93319 0.88674 0.88141 0.86353 0.91858 0.89034 0.89221 0.90066 0.84470 0.89856 0.90131 0.76340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.57 10.54 127.77 1.35 4.92 16 2 N -0.99 -43.60 2.56 -543.22 -1.39 -44.99 16 3 C 0.25 13.18 3.77 85.63 0.32 13.50 16 4 C -0.44 -25.21 6.65 25.60 0.17 -25.04 16 5 H 0.04 2.77 7.52 -2.91 -0.02 2.75 16 6 C 0.01 0.60 5.47 84.65 0.46 1.06 16 7 N -0.95 -58.68 13.96 21.45 0.30 -58.38 16 8 Si 0.92 47.12 27.47 68.60 1.88 49.01 16 9 H -0.28 -14.56 7.11 99.48 0.71 -13.85 16 10 H -0.28 -14.10 7.11 99.48 0.71 -13.39 16 11 H -0.26 -12.75 6.54 99.48 0.65 -12.10 16 12 S 2.82 115.78 5.06 -56.49 -0.29 115.49 16 13 O -1.02 -42.96 16.50 -128.00 -2.11 -45.07 16 14 O -1.00 -48.88 13.24 -117.96 -1.56 -50.44 16 15 N -0.99 -29.38 2.96 -500.47 -1.48 -30.86 16 16 C 0.10 2.06 6.48 86.27 0.56 2.62 16 17 C -0.13 -1.91 6.04 30.72 0.19 -1.72 16 18 C -0.12 -1.89 5.69 30.59 0.17 -1.72 16 19 C 0.09 2.18 2.39 29.89 0.07 2.25 16 20 H 0.07 2.07 8.11 -2.39 -0.02 2.06 16 21 O -0.38 -9.57 10.37 -148.98 -1.54 -11.11 16 22 C 0.04 0.68 6.21 71.48 0.44 1.13 16 23 C 0.07 1.48 6.59 86.60 0.57 2.05 16 24 N -0.70 -23.65 5.26 -477.70 -2.51 -26.16 16 25 C 0.45 17.28 6.55 87.47 0.57 17.86 16 26 O -0.48 -22.96 4.94 21.64 0.11 -22.85 16 27 C 0.13 3.67 2.20 43.17 0.09 3.76 16 28 H 0.12 2.63 6.37 -2.39 -0.02 2.62 16 29 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.06 2.46 7.19 -2.38 -0.02 2.44 16 31 H 0.07 2.16 6.33 -2.39 -0.02 2.14 16 32 H 0.01 0.35 7.20 -2.39 -0.02 0.33 16 33 H 0.03 1.79 5.64 -2.39 -0.01 1.77 16 34 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 35 H 0.09 2.04 6.78 -2.38 -0.02 2.02 16 36 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.06 1.08 6.80 -2.39 -0.02 1.06 16 39 H 0.09 0.99 8.14 -2.38 -0.02 0.98 16 40 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.08 0.99 6.48 -2.39 -0.02 0.97 16 42 H 0.14 1.43 8.14 -2.39 -0.02 1.42 16 43 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 44 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.40 15.34 8.79 -92.71 -0.81 14.52 16 Total: -1.00 -82.68 342.29 -3.47 -86.15 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.16 Total: 18.54 kcal Atomic # 6 Polarization: 15.70 SS G_CDS: 4.98 Total: 20.68 kcal Atomic # 7 Polarization: -155.30 SS G_CDS: -5.08 Total: -160.38 kcal Atomic # 8 Polarization: -124.37 SS G_CDS: -5.11 Total: -129.48 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.88 Total: 49.01 kcal Atomic # 16 Polarization: 115.78 SS G_CDS: -0.29 Total: 115.49 kcal Total: -82.68 -3.47 -86.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464347919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.757 kcal (2) G-P(sol) polarization free energy of solvation -82.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds