Wall clock time and date at job start Wed Apr 1 2020 06:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35674 * 116.99817 * 2 1 4 4 C 1.38918 * 119.68631 * 180.29649 * 3 2 1 5 5 C 1.38380 * 119.11341 * 180.24893 * 4 3 2 6 6 C 1.50699 * 120.75701 * 179.73270 * 5 4 3 7 7 C 1.52994 * 109.47393 * 269.72515 * 6 5 4 8 8 N 1.46498 * 109.47267 * 180.02562 * 7 6 5 9 9 C 1.34777 * 119.99881 * 180.02562 * 8 7 6 10 10 O 1.21592 * 119.99968 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00068 * 179.97438 * 9 8 7 12 12 C 1.46492 * 120.00234 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47164 * 35.00287 * 12 11 9 14 14 C 1.50698 * 109.47354 * 154.99895 * 12 11 9 15 15 H 1.08003 * 120.00057 * 0.02562 * 14 12 11 16 16 C 1.37876 * 120.00356 * 179.97438 * 14 12 11 17 17 N 1.31519 * 119.99989 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00260 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46926 * 60.00146 * 18 16 14 20 20 H 1.48500 * 109.47454 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47297 * 300.00528 * 18 16 14 22 22 C 1.53006 * 109.47363 * 275.00260 * 12 11 9 23 23 F 1.39900 * 109.46764 * 300.00053 * 22 12 11 24 24 F 1.39895 * 109.46931 * 59.99796 * 22 12 11 25 25 F 1.39897 * 109.47129 * 180.02562 * 22 12 11 26 26 C 1.38824 * 118.48398 * 359.46332 * 5 4 3 27 27 C 1.38044 * 119.28961 * 0.27291 * 26 5 4 28 28 N 1.31970 * 120.83888 * 0.02562 * 27 26 5 29 29 H 1.09005 * 109.47161 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47056 * 299.99545 * 1 2 3 31 31 H 1.08998 * 109.47537 * 59.99952 * 1 2 3 32 32 H 1.08001 * 120.44394 * 359.97438 * 4 3 2 33 33 H 1.08999 * 109.47021 * 149.72605 * 6 5 4 34 34 H 1.09008 * 109.47234 * 29.72646 * 6 5 4 35 35 H 1.09000 * 109.47485 * 59.99495 * 7 6 5 36 36 H 1.09008 * 109.47037 * 300.00252 * 7 6 5 37 37 H 0.96998 * 120.00220 * 359.97438 * 8 7 6 38 38 H 0.97005 * 119.99613 * 359.97438 * 11 9 8 39 39 H 0.96996 * 119.99885 * 179.97438 * 17 16 14 40 40 H 1.08000 * 120.35500 * 180.25047 * 26 5 4 41 41 H 1.08005 * 119.58702 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 -0.0062 5 6 4.0484 2.5132 -0.0009 6 6 5.5511 2.6270 -0.0014 7 6 6.0601 2.6658 1.4409 8 7 7.5209 2.7770 1.4405 9 6 8.1932 2.8277 2.6075 10 8 7.5873 2.7816 3.6607 11 7 9.5371 2.9295 2.6071 12 6 10.2679 2.9852 3.8755 13 1 9.7669 2.3562 4.6114 14 6 11.6756 2.4896 3.6665 15 1 11.9942 2.1659 2.6866 16 6 12.5572 2.4503 4.7259 17 7 12.1694 2.8449 5.9190 18 14 14.3023 1.8367 4.4666 19 1 14.9845 2.6937 3.4638 20 1 15.0431 1.8930 5.7524 21 1 14.2667 0.4350 3.9773 22 6 10.3051 4.4293 4.3798 23 9 10.9482 5.2365 3.4353 24 9 8.9983 4.8893 4.5739 25 9 11.0035 4.4825 5.5908 26 6 3.2504 3.6492 -0.0009 27 6 1.8770 3.5097 -0.0004 28 7 1.3185 2.3140 0.0005 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 4.0229 0.3696 -0.0107 33 1 5.8461 3.5418 -0.5154 34 1 5.9805 1.7669 -0.5152 35 1 5.7651 1.7511 1.9551 36 1 5.6307 3.5259 1.9548 37 1 8.0043 2.8135 0.6003 38 1 10.0205 2.9660 1.7669 39 1 12.7894 2.8169 6.6644 40 1 3.6992 4.6315 -0.0009 41 1 1.2516 4.3902 0.0000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001477101548.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:10 Heat of formation + Delta-G solvation = -169.746043 kcal Electronic energy + Delta-G solvation = -30140.183750 eV Core-core repulsion = 25220.453300 eV Total energy + Delta-G solvation = -4919.730450 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.30834 -45.96107 -45.57755 -40.92404 -39.37867 -38.30911 -35.85564 -34.53858 -33.37261 -32.49501 -31.02840 -29.65893 -27.98888 -27.33838 -24.57630 -24.09520 -23.60013 -21.72042 -21.45277 -20.21706 -18.54593 -17.89951 -17.39001 -16.88228 -16.77477 -16.57488 -16.29975 -16.20273 -16.08574 -15.39012 -15.23563 -14.80245 -14.54569 -14.47488 -14.01857 -13.61358 -13.54137 -13.28605 -12.93030 -12.86001 -12.48885 -12.42267 -12.35842 -12.27291 -12.23248 -12.03858 -11.94289 -11.78545 -11.48396 -11.44360 -11.15434 -10.86543 -10.77166 -10.39498 -9.95758 -9.90004 -9.66499 -9.54837 -8.85229 -8.77879 -8.70096 -8.16326 -6.22506 -4.46570 0.86774 0.96052 2.79072 3.12840 3.20182 3.25343 3.27678 3.49881 3.78119 4.02663 4.19159 4.37470 4.60036 4.62081 4.79481 4.82663 4.86790 4.91208 4.94724 4.97853 5.01596 5.09206 5.29639 5.35195 5.46470 5.62620 5.74016 5.85297 5.91342 5.93443 6.07198 6.15243 6.24829 6.73541 6.84987 6.95026 7.21131 7.37062 7.56687 7.62938 7.68576 8.49758 8.65564 9.15025 9.25605 10.69018 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.021838 B = 0.002059 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.859150 B =13595.222441 C =14095.497253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.309 6.309 3 C 0.320 3.680 4 C -0.184 4.184 5 C 0.001 3.999 6 C -0.094 4.094 7 C 0.148 3.852 8 N -0.755 5.755 9 C 0.698 3.302 10 O -0.583 6.583 11 N -0.726 5.726 12 C 0.263 3.737 13 H 0.085 0.915 14 C -0.552 4.552 15 H 0.076 0.924 16 C 0.064 3.936 17 N -0.839 5.839 18 Si 0.916 3.084 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.416 3.584 23 F -0.211 7.211 24 F -0.217 7.217 25 F -0.137 7.137 26 C -0.204 4.204 27 C 0.140 3.860 28 N -0.545 5.545 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.143 0.857 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.393 0.607 38 H 0.394 0.606 39 H 0.269 0.731 40 H 0.140 0.860 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.183 -1.053 -14.461 21.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.216 6.216 3 C 0.141 3.859 4 C -0.205 4.205 5 C -0.007 4.007 6 C -0.132 4.132 7 C 0.023 3.977 8 N -0.412 5.412 9 C 0.398 3.602 10 O -0.460 6.460 11 N -0.379 5.379 12 C 0.156 3.844 13 H 0.103 0.897 14 C -0.589 4.589 15 H 0.094 0.906 16 C -0.145 4.145 17 N -0.473 5.473 18 Si 0.742 3.258 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.198 1.198 22 C 0.359 3.641 23 F -0.192 7.192 24 F -0.199 7.199 25 F -0.119 7.119 26 C -0.224 4.224 27 C -0.015 4.015 28 N -0.269 5.269 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.161 0.839 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.226 0.774 38 H 0.228 0.772 39 H 0.079 0.921 40 H 0.157 0.843 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -17.492 -1.403 -13.198 21.957 hybrid contribution 1.922 0.329 -0.766 2.095 sum -15.569 -1.074 -13.963 20.941 Atomic orbital electron populations 1.22851 0.77221 1.02932 1.02423 1.86247 1.22927 1.24594 1.87807 1.19809 0.89309 0.84704 0.92053 1.20979 0.92001 0.99228 1.08272 1.19883 0.95765 0.92075 0.92967 1.20848 0.90075 1.04410 0.97852 1.20980 0.79492 1.02717 0.94516 1.45043 1.06806 1.81866 1.07501 1.16055 0.82332 0.77972 0.83837 1.90929 1.67779 1.57274 1.30004 1.45262 1.04161 1.77916 1.10555 1.19592 0.94268 0.87610 0.82898 0.89746 1.20832 0.93915 1.47118 0.97045 0.90555 1.25085 0.99966 0.94446 0.94958 1.70397 1.36061 1.40537 1.00257 0.86267 0.82431 0.79338 0.77751 1.19854 1.20890 1.19812 1.23186 0.71861 0.92027 0.77012 1.92981 1.82658 1.77144 1.66466 1.93070 1.39953 1.91405 1.95435 1.93400 1.77601 1.96302 1.44559 1.21945 0.94721 0.99611 1.06114 1.22381 0.92803 0.93591 0.92774 1.67308 1.41069 0.98897 1.19618 0.88643 0.92263 0.92373 0.83934 0.89385 0.89486 0.91484 0.91472 0.77365 0.77246 0.92062 0.84251 0.82288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.38 101.05 1.05 1.36 16 2 O -0.31 -3.30 10.48 -18.72 -0.20 -3.50 16 3 C 0.32 3.56 7.49 -17.12 -0.13 3.44 16 4 C -0.18 -1.85 9.74 -39.28 -0.38 -2.23 16 5 C 0.00 0.01 5.17 -104.35 -0.54 -0.53 16 6 C -0.09 -0.76 5.51 -27.89 -0.15 -0.91 16 7 C 0.15 1.78 5.66 -4.05 -0.02 1.75 16 8 N -0.75 -10.37 5.56 -65.22 -0.36 -10.73 16 9 C 0.70 13.75 8.10 -86.92 -0.70 13.05 16 10 O -0.58 -14.07 14.92 5.29 0.08 -13.99 16 11 N -0.73 -14.67 4.99 -59.81 -0.30 -14.97 16 12 C 0.26 6.53 2.21 -69.08 -0.15 6.38 16 13 H 0.08 2.37 7.58 -51.93 -0.39 1.98 16 14 C -0.55 -13.97 8.47 -34.44 -0.29 -14.26 16 15 H 0.08 1.81 7.74 -52.48 -0.41 1.40 16 16 C 0.06 1.67 5.20 -17.82 -0.09 1.57 16 17 N -0.84 -23.02 9.50 55.43 0.53 -22.49 16 18 Si 0.92 19.97 29.54 -169.99 -5.02 14.95 16 19 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 22 C 0.42 10.72 2.81 37.16 0.10 10.82 16 23 F -0.21 -5.19 16.94 2.25 0.04 -5.16 16 24 F -0.22 -5.60 15.68 2.25 0.04 -5.56 16 25 F -0.14 -3.83 12.91 2.25 0.03 -3.80 16 26 C -0.20 -1.71 9.81 -39.44 -0.39 -2.09 16 27 C 0.14 1.22 11.18 -17.56 -0.20 1.03 16 28 N -0.54 -5.88 9.22 -13.33 -0.12 -6.00 16 29 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 31 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 32 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 33 H 0.09 0.58 8.10 -51.93 -0.42 0.16 16 34 H 0.09 0.60 8.10 -51.92 -0.42 0.18 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 37 H 0.39 4.04 8.49 -40.82 -0.35 3.69 16 38 H 0.39 6.71 8.55 -40.82 -0.35 6.36 16 39 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.16 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 364.43 15.07 5.49 5.49 Total: -1.00 -33.22 364.43 -6.55 -39.77 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -4.85 Total: 6.61 kcal Atomic # 6 Polarization: 21.27 SS G_CDS: -1.90 Total: 19.37 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -0.26 Total: -54.20 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.12 Total: -17.49 kcal Atomic # 9 Polarization: -14.61 SS G_CDS: 0.10 Total: -14.51 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.22 -6.55 -39.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477101548.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.974 kcal (2) G-P(sol) polarization free energy of solvation -33.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds