Wall clock time and date at job start Wed Apr 1 2020 05:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36935 * 120.00390 * 2 1 4 4 H 1.08005 * 119.99867 * 321.78240 * 3 2 1 5 5 C 1.38804 * 120.00176 * 141.78348 * 3 2 1 6 6 N 1.31627 * 119.99948 * 157.36624 * 5 3 2 7 7 Si 1.86797 * 120.00098 * 337.37093 * 5 3 2 8 8 H 1.48507 * 109.47040 * 95.66705 * 7 5 3 9 9 H 1.48500 * 109.47148 * 215.66353 * 7 5 3 10 10 H 1.48498 * 109.47231 * 335.66885 * 7 5 3 11 11 C 1.46506 * 119.99738 * 180.02562 * 2 1 3 12 12 C 1.52993 * 109.47207 * 89.99802 * 11 2 1 13 13 H 1.09001 * 110.89089 * 308.88154 * 12 11 2 14 14 C 1.55158 * 111.00152 * 184.99696 * 12 11 2 15 15 C 1.54327 * 102.94341 * 206.42210 * 14 12 11 16 16 N 1.47028 * 107.26968 * 22.19791 * 15 14 12 17 17 C 1.34771 * 125.64505 * 181.10230 * 16 15 14 18 18 O 1.21691 * 119.99298 * 179.97438 * 17 16 15 19 19 C 1.46714 * 120.00403 * 359.97438 * 17 16 15 20 20 O 1.35337 * 126.64361 * 359.68460 * 19 17 16 21 21 C 1.33667 * 107.68569 * 179.87551 * 20 19 17 22 22 N 1.30617 * 109.15474 * 0.39804 * 21 20 19 23 23 C 1.33697 * 108.99504 * 359.75263 * 22 21 20 24 24 C 1.50692 * 126.27377 * 180.02562 * 23 22 21 25 25 F 1.39905 * 109.47019 * 269.97308 * 24 23 22 26 26 F 1.39893 * 109.47595 * 29.97248 * 24 23 22 27 27 F 1.39904 * 109.47416 * 149.97671 * 24 23 22 28 28 C 1.47425 * 108.70152 * 1.05614 * 16 15 14 29 29 H 1.08994 * 109.47401 * 265.67954 * 1 2 3 30 30 H 1.08997 * 109.47665 * 145.67612 * 1 2 3 31 31 H 1.09007 * 109.47002 * 25.68348 * 1 2 3 32 32 H 0.97004 * 119.99623 * 179.97438 * 6 5 3 33 33 H 1.08997 * 109.46744 * 210.00091 * 11 2 1 34 34 H 1.09003 * 109.46849 * 329.99449 * 11 2 1 35 35 H 1.08996 * 110.72519 * 324.79002 * 14 12 11 36 36 H 1.08999 * 110.71895 * 87.88599 * 14 12 11 37 37 H 1.09005 * 109.87946 * 141.60906 * 15 14 12 38 38 H 1.09000 * 109.88583 * 262.78108 * 15 14 12 39 39 H 1.08004 * 125.42548 * 180.15154 * 21 20 19 40 40 H 1.08998 * 110.36724 * 217.03504 * 28 16 15 41 41 H 1.08999 * 110.36373 * 94.70934 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 1.7833 2.0210 -0.5787 5 6 3.3146 1.3146 0.7436 6 7 4.1997 2.2357 0.4261 7 14 3.6265 0.1807 2.1949 8 1 4.4689 -0.9617 1.7585 9 1 4.3273 0.9311 3.2678 10 1 2.3311 -0.3288 2.7123 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 1 1.5293 -1.6962 -2.0227 14 6 3.1160 -3.1117 -1.4871 15 6 3.8880 -3.0871 -2.8231 16 7 4.1113 -1.6764 -3.1722 17 6 4.7342 -1.2308 -4.2812 18 8 4.8626 -0.0352 -4.4680 19 6 5.2576 -2.1872 -5.2630 20 8 5.1950 -3.5371 -5.1886 21 6 5.7837 -4.0318 -6.2819 22 7 6.2132 -3.0445 -7.0214 23 6 5.9064 -1.8882 -6.4244 24 6 6.2198 -0.5076 -6.9407 25 9 7.4707 -0.1034 -6.4617 26 9 6.2398 -0.5261 -8.3393 27 9 5.2401 0.3887 -6.5001 28 6 3.5399 -0.8301 -2.1089 29 1 -0.3634 -0.0774 1.0247 30 1 -0.3634 -0.8487 -0.5794 31 1 -0.3633 0.9262 -0.4454 32 1 5.0136 2.3259 0.9460 33 1 3.1498 -1.1387 0.5133 34 1 1.6083 -2.0286 0.5130 35 1 3.8002 -3.2410 -0.6486 36 1 2.3595 -3.8965 -1.4901 37 1 4.8448 -3.5963 -2.7078 38 1 3.2985 -3.5726 -3.6009 39 1 5.8911 -5.0809 -6.5147 40 1 3.0924 0.0668 -2.5372 41 1 4.3079 -0.5625 -1.3832 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494147509.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:29 Heat of formation + Delta-G solvation = -112.413612 kcal Electronic energy + Delta-G solvation = -31993.535035 eV Core-core repulsion = 27076.290706 eV Total energy + Delta-G solvation = -4917.244329 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -50.07594 -47.64217 -47.49261 -44.06547 -39.90054 -37.78877 -35.89278 -35.45953 -32.32251 -31.62354 -31.14915 -29.11127 -27.34770 -26.28240 -25.72007 -24.29018 -23.03111 -22.27231 -21.17753 -20.49920 -19.94837 -18.77441 -18.56371 -18.22296 -17.54100 -17.35353 -16.94963 -16.32442 -15.89923 -15.51582 -15.32684 -14.80669 -14.44209 -14.37534 -14.14886 -14.02951 -13.97973 -13.71931 -13.65011 -13.45811 -13.28723 -12.87289 -12.74937 -12.51280 -12.44575 -12.18437 -12.06749 -11.88062 -11.58172 -11.42006 -11.14375 -10.93059 -10.69899 -10.43048 -10.34782 -10.19677 -9.84261 -9.77470 -9.60328 -8.57874 -8.54133 -6.86883 -6.02503 -3.45438 0.19890 1.72651 1.79165 2.39277 2.83899 2.87481 3.22235 3.33869 3.42156 3.46190 3.67454 4.01861 4.32670 4.44941 4.46960 4.63003 4.69563 4.77232 4.88053 5.00587 5.16948 5.33069 5.36710 5.46041 5.59052 5.77505 5.85843 6.01949 6.08224 6.23164 6.27394 6.34754 6.37466 6.59096 6.67637 6.69858 6.79996 6.82578 7.42618 7.90985 8.00848 8.35259 8.93815 9.66276 10.06849 11.12180 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015490 B = 0.003446 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.241758 B = 8123.677371 C = 8903.043791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.612 5.612 3 C -0.272 4.272 4 H 0.079 0.921 5 C 0.040 3.960 6 N -0.890 5.890 7 Si 0.870 3.130 8 H -0.286 1.286 9 H -0.300 1.300 10 H -0.270 1.270 11 C 0.148 3.852 12 C -0.112 4.112 13 H 0.080 0.920 14 C -0.131 4.131 15 C 0.099 3.901 16 N -0.600 5.600 17 C 0.595 3.405 18 O -0.480 6.480 19 C -0.008 4.008 20 O -0.173 6.173 21 C 0.204 3.796 22 N -0.458 5.458 23 C -0.040 4.040 24 C 0.552 3.448 25 F -0.166 7.166 26 F -0.169 7.169 27 F -0.136 7.136 28 C 0.129 3.871 29 H 0.006 0.994 30 H 0.026 0.974 31 H 0.045 0.955 32 H 0.264 0.736 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.267 0.733 40 H 0.095 0.905 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.330 -17.098 -11.688 20.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.335 5.335 3 C -0.401 4.401 4 H 0.097 0.903 5 C -0.161 4.161 6 N -0.531 5.531 7 Si 0.700 3.300 8 H -0.214 1.214 9 H -0.228 1.228 10 H -0.194 1.194 11 C 0.022 3.978 12 C -0.134 4.134 13 H 0.098 0.902 14 C -0.169 4.169 15 C -0.024 4.024 16 N -0.333 5.333 17 C 0.379 3.621 18 O -0.354 6.354 19 C -0.067 4.067 20 O -0.058 6.058 21 C -0.022 4.022 22 N -0.184 5.184 23 C -0.165 4.165 24 C 0.496 3.504 25 F -0.148 7.148 26 F -0.150 7.150 27 F -0.117 7.117 28 C 0.009 3.991 29 H 0.025 0.975 30 H 0.045 0.955 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.283 0.717 40 H 0.113 0.887 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.856 -16.356 -12.329 20.567 hybrid contribution 0.183 -0.734 1.271 1.479 sum 2.039 -17.090 -11.058 20.458 Atomic orbital electron populations 1.21083 0.84538 0.99079 0.97373 1.44066 1.00818 1.01944 1.86711 1.18766 1.06254 0.90859 1.24187 0.90303 1.25476 0.96902 0.96330 0.97436 1.69893 1.08519 1.35566 1.39087 0.87053 0.77925 0.80163 0.84855 1.21429 1.22822 1.19440 1.21133 0.96735 0.88086 0.91880 1.23093 0.97458 0.92204 1.00685 0.90209 1.22724 0.99558 0.98820 0.95831 1.22135 1.00268 0.82063 0.97916 1.48637 1.54945 1.09278 1.20450 1.15967 0.80059 0.85940 0.80119 1.91092 1.56913 1.12872 1.74566 1.23414 1.03683 0.81071 0.98545 1.84693 1.60251 1.19255 1.41556 1.28466 0.92318 1.01015 0.80421 1.70160 1.21131 0.96771 1.30371 1.21692 1.05079 0.94807 0.94915 1.16723 0.75515 0.82928 0.75210 1.93247 1.42093 1.91382 1.88054 1.93217 1.96243 1.96740 1.28801 1.93433 1.61219 1.68551 1.88515 1.22461 0.95556 0.93718 0.87347 0.97542 0.95550 0.93580 0.92632 0.92542 0.93567 0.90449 0.90021 0.91352 0.91275 0.71721 0.88664 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.33 10.70 59.84 0.64 2.98 16 2 N -0.61 -13.58 2.45 -181.12 -0.44 -14.02 16 3 C -0.27 -7.21 9.21 -15.06 -0.14 -7.35 16 4 H 0.08 2.31 8.06 -52.48 -0.42 1.88 16 5 C 0.04 1.10 5.29 -17.43 -0.09 1.01 16 6 N -0.89 -26.35 13.97 55.49 0.78 -25.58 16 7 Si 0.87 21.15 25.09 -169.99 -4.26 16.88 16 8 H -0.29 -6.62 6.68 56.52 0.38 -6.24 16 9 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 C 0.15 2.85 4.06 -4.04 -0.02 2.83 16 12 C -0.11 -1.83 3.26 -88.47 -0.29 -2.12 16 13 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 14 C -0.13 -1.59 6.42 -24.89 -0.16 -1.75 16 15 C 0.10 1.18 5.56 -3.06 -0.02 1.16 16 16 N -0.60 -9.72 3.33 -172.04 -0.57 -10.30 16 17 C 0.60 10.24 7.77 -12.84 -0.10 10.14 16 18 O -0.48 -9.97 13.39 5.20 0.07 -9.90 16 19 C -0.01 -0.12 6.94 -36.84 -0.26 -0.37 16 20 O -0.17 -1.72 8.51 4.44 0.04 -1.68 16 21 C 0.20 1.52 13.21 52.25 0.69 2.21 16 22 N -0.46 -5.35 11.21 -10.88 -0.12 -5.47 16 23 C -0.04 -0.57 6.49 -82.46 -0.54 -1.10 16 24 C 0.55 8.48 3.34 36.00 0.12 8.60 16 25 F -0.17 -2.63 17.30 2.25 0.04 -2.59 16 26 F -0.17 -2.43 17.27 2.25 0.04 -2.39 16 27 F -0.14 -2.38 13.47 2.25 0.03 -2.35 16 28 C 0.13 2.47 5.68 -2.53 -0.01 2.46 16 29 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.03 0.42 8.10 -51.93 -0.42 0.00 16 31 H 0.05 0.86 8.01 -51.93 -0.42 0.45 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.06 1.21 3.21 -51.93 -0.17 1.05 16 34 H 0.05 0.78 8.07 -51.93 -0.42 0.36 16 35 H 0.08 0.95 8.04 -51.93 -0.42 0.53 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.72 7.81 -51.93 -0.41 0.32 16 38 H 0.07 0.70 7.71 -51.93 -0.40 0.30 16 39 H 0.27 0.29 8.06 -52.48 -0.42 -0.13 16 40 H 0.10 2.13 8.04 -51.93 -0.42 1.71 16 41 H 0.08 1.80 7.91 -51.93 -0.41 1.39 16 LS Contribution 350.55 15.07 5.28 5.28 Total: -1.00 -32.94 350.55 -4.04 -36.98 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -4.75 Total: -3.55 kcal Atomic # 6 Polarization: 18.86 SS G_CDS: -0.17 Total: 18.70 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.36 Total: -55.37 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.11 Total: -11.59 kcal Atomic # 9 Polarization: -7.44 SS G_CDS: 0.11 Total: -7.33 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.26 Total: 16.88 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.94 -4.04 -36.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494147509.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.434 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds