Wall clock time and date at job start Wed Apr 1 2020 04:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81393 * 109.47009 * 2 1 4 4 O 1.42099 * 110.54304 * 68.37646 * 3 2 1 5 5 O 1.42099 * 110.54510 * 291.62201 * 3 2 1 6 6 N 1.65606 * 104.44933 * 179.97438 * 3 2 1 7 7 C 1.46500 * 119.99507 * 65.00102 * 6 3 2 8 8 C 1.50704 * 109.46777 * 164.99826 * 7 6 3 9 9 O 1.21279 * 120.00108 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99762 * 179.97438 * 8 7 6 11 11 C 1.47137 * 121.06116 * 359.97438 * 10 8 7 12 12 C 1.53223 * 108.72646 * 127.72429 * 11 10 8 13 13 O 1.43118 * 109.35471 * 54.19296 * 12 11 10 14 14 C 1.42353 * 113.99314 * 300.22319 * 13 12 11 15 15 C 1.52915 * 114.29884 * 285.04719 * 14 13 12 16 16 N 1.47166 * 87.84964 * 271.72443 * 15 14 13 17 17 C 1.36930 * 136.00334 * 153.32674 * 16 15 14 18 18 H 1.08004 * 119.99699 * 354.27155 * 17 16 15 19 19 C 1.38812 * 120.00284 * 174.27329 * 17 16 15 20 20 N 1.31615 * 120.00368 * 185.32852 * 19 17 16 21 21 Si 1.86805 * 119.99570 * 5.33572 * 19 17 16 22 22 H 1.48503 * 109.46598 * 185.37040 * 21 19 17 23 23 H 1.48495 * 109.47085 * 305.36485 * 21 19 17 24 24 H 1.48494 * 109.47362 * 65.36705 * 21 19 17 25 25 C 1.47183 * 87.99696 * 333.57662 * 16 15 14 26 26 C 1.47358 * 121.06016 * 180.02562 * 10 8 7 27 27 H 1.08995 * 109.47285 * 299.99905 * 1 2 3 28 28 H 1.09003 * 109.46916 * 59.99898 * 1 2 3 29 29 H 1.08997 * 109.47154 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47020 * 239.99996 * 2 1 3 31 31 H 1.09003 * 109.46916 * 120.00101 * 2 1 3 32 32 H 0.96992 * 120.00212 * 244.99672 * 6 3 2 33 33 H 1.08997 * 109.47533 * 45.00264 * 7 6 3 34 34 H 1.08996 * 109.47343 * 284.99785 * 7 6 3 35 35 H 1.08997 * 109.59329 * 247.49284 * 11 10 8 36 36 H 1.08991 * 109.59640 * 7.95168 * 11 10 8 37 37 H 1.08996 * 109.49198 * 174.15950 * 12 11 10 38 38 H 1.09000 * 109.48909 * 294.23331 * 12 11 10 39 39 H 1.09000 * 113.49392 * 156.97408 * 15 14 13 40 40 H 1.09006 * 113.54861 * 26.47414 * 15 14 13 41 41 H 0.97002 * 119.99753 * 354.99129 * 20 19 17 42 42 H 1.08993 * 113.48874 * 141.16922 * 25 16 15 43 43 H 1.08999 * 113.49290 * 271.68301 * 25 16 15 44 44 H 1.09004 * 109.74635 * 108.59185 * 26 10 8 45 45 H 1.09000 * 109.79022 * 347.89643 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 8 1.8385 2.3438 1.2370 5 8 1.8386 2.3438 -1.2370 6 7 3.7843 1.5653 0.0007 7 6 4.4675 0.9669 -1.1488 8 6 5.9401 1.2786 -1.0761 9 8 6.3761 1.9356 -0.1545 10 7 6.7728 0.8266 -2.0347 11 6 6.2693 0.0263 -3.1620 12 6 6.7503 0.6623 -4.4704 13 8 8.1736 0.8080 -4.4317 14 6 8.6431 1.6238 -3.3638 15 6 8.4203 3.1223 -3.5718 16 7 9.7207 3.1639 -4.2595 17 6 10.3014 3.9457 -5.2221 18 1 9.7220 4.7095 -5.7194 19 6 11.6347 3.7565 -5.5588 20 7 12.2218 4.5742 -6.4066 21 14 12.5956 2.3410 -4.8086 22 1 14.0184 2.4336 -5.2240 23 1 12.5066 2.4120 -3.3281 24 1 12.0258 1.0524 -5.2776 25 6 10.1211 1.9926 -3.4632 26 6 8.2166 1.1171 -1.9864 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.2982 1.8766 0.7621 33 1 4.0545 1.3765 -2.0706 34 1 4.3237 -0.1135 -1.1350 35 1 6.6525 -0.9914 -3.0878 36 1 5.1796 0.0114 -3.1419 37 1 6.4728 0.0236 -5.3089 38 1 6.2876 1.6419 -4.5902 39 1 8.4016 3.6919 -2.6426 40 1 7.5768 3.3508 -4.2234 41 1 11.7053 5.2643 -6.8516 42 1 10.7116 1.2677 -4.0233 43 1 10.5695 2.2519 -2.5041 44 1 8.7671 0.2087 -1.7411 45 1 8.4144 1.8816 -1.2351 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502413143.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:17 Heat of formation + Delta-G solvation = -64.212694 kcal Electronic energy + Delta-G solvation = -29530.304168 eV Core-core repulsion = 25292.450679 eV Total energy + Delta-G solvation = -4237.853489 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -40.86710 -39.33533 -37.52797 -36.78789 -36.37898 -35.22319 -34.82367 -33.72526 -32.49613 -30.58967 -28.87481 -27.51285 -25.73117 -25.45161 -24.63333 -23.57722 -21.56547 -20.01214 -19.76923 -19.16562 -18.48047 -17.55481 -17.39792 -17.06632 -16.63293 -16.50093 -16.14023 -15.96240 -15.37241 -15.16620 -14.85088 -14.64453 -14.39094 -14.02833 -13.82433 -13.79793 -13.48681 -13.26119 -13.12090 -13.06909 -12.86632 -12.52959 -12.48374 -12.41719 -12.27269 -12.14804 -11.78253 -11.47216 -11.20241 -11.15897 -10.86079 -10.60515 -10.48618 -10.24419 -10.01994 -9.89552 -9.22416 -9.11324 -8.90615 -8.63344 -7.15679 -6.30403 -3.21669 -0.25266 2.13171 2.23943 2.62425 3.31932 3.40503 3.45901 3.63258 3.67202 3.73771 3.91240 4.02371 4.23279 4.48553 4.51595 4.58288 4.60746 4.65077 4.68780 4.76238 4.77556 4.91136 4.96983 5.01783 5.09073 5.12525 5.34686 5.38404 5.49070 5.53428 5.62589 5.74643 5.96141 6.10468 6.12633 6.14856 6.28749 6.44823 6.51890 7.03573 7.04835 7.43811 7.77143 8.24015 8.98058 9.50004 10.33301 11.22269 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.025922 B = 0.002410 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.921516 B =11614.667852 C =11739.392834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.633 4.633 3 S 2.614 3.386 4 O -0.951 6.951 5 O -0.951 6.951 6 N -1.109 6.109 7 C 0.095 3.905 8 C 0.516 3.484 9 O -0.527 6.527 10 N -0.609 5.609 11 C 0.069 3.931 12 C 0.043 3.957 13 O -0.334 6.334 14 C 0.057 3.943 15 C 0.106 3.894 16 N -0.618 5.618 17 C -0.300 4.300 18 H 0.083 0.917 19 C -0.025 4.025 20 N -0.935 5.935 21 Si 1.070 2.930 22 H -0.294 1.294 23 H -0.287 1.287 24 H -0.290 1.290 25 C 0.115 3.885 26 C 0.102 3.898 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.429 0.571 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.047 0.953 41 H 0.260 0.740 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.003 -16.850 12.763 31.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.762 4.762 3 S 2.705 3.295 4 O -0.941 6.941 5 O -0.941 6.941 6 N -0.871 5.871 7 C -0.035 4.035 8 C 0.302 3.698 9 O -0.403 6.403 10 N -0.343 5.343 11 C -0.054 4.054 12 C -0.034 4.034 13 O -0.252 6.252 14 C 0.014 3.986 15 C -0.021 4.021 16 N -0.346 5.346 17 C -0.426 4.426 18 H 0.100 0.900 19 C -0.224 4.224 20 N -0.577 5.577 21 Si 0.903 3.097 22 H -0.222 1.222 23 H -0.214 1.214 24 H -0.218 1.218 25 C -0.011 4.011 26 C -0.021 4.021 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.150 0.850 31 H 0.153 0.847 32 H 0.267 0.733 33 H 0.130 0.870 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.125 0.875 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.097 0.903 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -21.591 -16.339 12.838 29.966 hybrid contribution -1.394 0.126 0.249 1.422 sum -22.985 -16.214 13.087 31.024 Atomic orbital electron populations 1.21513 0.90242 1.05222 1.03686 1.30523 1.07548 1.26389 1.11779 1.05016 0.72689 0.77265 0.74521 1.93630 1.82705 1.72785 1.45005 1.93624 1.83114 1.71838 1.45533 1.55430 1.25959 1.78000 1.27745 1.21143 0.92114 0.99277 0.90955 1.20279 0.87872 0.79548 0.82101 1.90717 1.77105 1.38843 1.33670 1.48161 1.08668 1.53263 1.24229 1.22556 1.00021 0.95849 0.87016 1.22938 0.83300 1.00928 0.96270 1.88010 1.19585 1.68624 1.48933 1.23100 0.98419 0.91698 0.85338 1.22820 0.91075 0.92102 0.96098 1.45794 1.13220 1.33669 1.41910 1.20107 0.95894 1.13933 1.12674 0.89959 1.25745 0.93498 1.02813 1.00304 1.70920 1.36662 1.19461 1.30662 0.83710 0.75632 0.74980 0.75419 1.22171 1.21387 1.21809 1.22640 0.91605 0.90478 0.96373 1.22222 0.78848 1.02502 0.98521 0.90834 0.90766 0.89874 0.84998 0.84716 0.73313 0.87031 0.88682 0.89754 0.88983 0.87459 0.92298 0.93487 0.93495 0.92963 0.91668 0.91979 0.90278 0.87510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 9.92 37.16 0.37 -0.18 16 2 C -0.63 -2.17 6.79 37.16 0.25 -1.92 16 3 S 2.61 20.05 5.46 -107.50 -0.59 19.46 16 4 O -0.95 -10.72 18.08 -57.54 -1.04 -11.76 16 5 O -0.95 -10.45 17.50 -57.54 -1.01 -11.46 16 6 N -1.11 -8.71 5.82 -11.66 -0.07 -8.78 16 7 C 0.10 0.66 4.98 -5.19 -0.03 0.64 16 8 C 0.52 5.74 7.78 -10.98 -0.09 5.66 16 9 O -0.53 -7.78 15.23 5.56 0.08 -7.69 16 10 N -0.61 -6.67 3.03 -172.44 -0.52 -7.20 16 11 C 0.07 0.54 6.50 -3.58 -0.02 0.51 16 12 C 0.04 0.48 6.90 37.27 0.26 0.74 16 13 O -0.33 -5.62 10.53 -35.23 -0.37 -5.99 16 14 C 0.06 0.98 1.27 -90.93 -0.12 0.86 16 15 C 0.11 2.15 7.91 -8.21 -0.06 2.08 16 16 N -0.62 -15.51 3.70 -184.94 -0.68 -16.19 16 17 C -0.30 -8.83 11.08 -15.06 -0.17 -9.00 16 18 H 0.08 2.56 8.05 -52.48 -0.42 2.13 16 19 C -0.03 -0.76 5.50 -17.43 -0.10 -0.86 16 20 N -0.93 -29.88 13.70 55.49 0.76 -29.12 16 21 Si 1.07 26.92 25.15 -169.99 -4.27 22.64 16 22 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 23 H -0.29 -6.61 6.18 56.52 0.35 -6.26 16 24 H -0.29 -6.94 6.53 56.52 0.37 -6.57 16 25 C 0.12 2.42 5.10 -8.34 -0.04 2.38 16 26 C 0.10 1.38 5.84 -3.66 -0.02 1.36 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.13 0.16 8.14 -51.92 -0.42 -0.26 16 31 H 0.13 0.26 8.14 -51.92 -0.42 -0.16 16 32 H 0.43 3.80 7.66 -34.48 -0.26 3.53 16 33 H 0.11 0.67 7.25 -51.93 -0.38 0.30 16 34 H 0.10 0.25 7.98 -51.93 -0.41 -0.16 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.38 6.03 -51.93 -0.31 0.06 16 37 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.71 7.30 -51.93 -0.38 0.33 16 39 H 0.05 0.94 7.93 -51.93 -0.41 0.53 16 40 H 0.05 0.95 7.36 -51.93 -0.38 0.57 16 41 H 0.26 8.23 8.73 -40.82 -0.36 7.87 16 42 H 0.07 1.44 4.69 -51.93 -0.24 1.19 16 43 H 0.06 1.23 7.62 -51.93 -0.40 0.83 16 44 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.11 1.56 6.90 -51.93 -0.36 1.20 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -41.15 370.24 -8.47 -49.63 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -6.58 Total: -1.39 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 0.24 Total: 2.28 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -0.51 Total: -61.29 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -2.33 Total: -36.90 kcal Atomic # 14 Polarization: 26.92 SS G_CDS: -4.27 Total: 22.64 kcal Atomic # 16 Polarization: 20.05 SS G_CDS: -0.59 Total: 19.46 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -41.15 -8.47 -49.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502413143.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.587 kcal (2) G-P(sol) polarization free energy of solvation -41.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds