Wall clock time and date at job start Wed Apr 1 2020 04:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81393 * 109.47009 * 2 1 4 4 O 1.42099 * 110.54304 * 68.37646 * 3 2 1 5 5 O 1.42099 * 110.54510 * 291.62201 * 3 2 1 6 6 N 1.65606 * 104.44933 * 179.97438 * 3 2 1 7 7 C 1.46500 * 119.99507 * 65.00102 * 6 3 2 8 8 C 1.50704 * 109.46777 * 164.99826 * 7 6 3 9 9 O 1.21279 * 120.00108 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99762 * 179.97438 * 8 7 6 11 11 C 1.47137 * 121.06116 * 359.97438 * 10 8 7 12 12 C 1.53223 * 108.72646 * 127.72429 * 11 10 8 13 13 O 1.43118 * 109.35471 * 54.19296 * 12 11 10 14 14 C 1.42353 * 113.99314 * 300.22319 * 13 12 11 15 15 C 1.52915 * 114.29884 * 285.04719 * 14 13 12 16 16 N 1.47166 * 87.84964 * 271.72443 * 15 14 13 17 17 C 1.36930 * 136.00334 * 153.32674 * 16 15 14 18 18 H 1.08004 * 119.99699 * 354.27155 * 17 16 15 19 19 C 1.38812 * 120.00284 * 174.27329 * 17 16 15 20 20 N 1.31615 * 120.00368 * 185.32852 * 19 17 16 21 21 Si 1.86805 * 119.99570 * 5.33572 * 19 17 16 22 22 H 1.48503 * 109.46598 * 185.37040 * 21 19 17 23 23 H 1.48495 * 109.47085 * 305.36485 * 21 19 17 24 24 H 1.48494 * 109.47362 * 65.36705 * 21 19 17 25 25 C 1.47183 * 87.99696 * 333.57662 * 16 15 14 26 26 C 1.47358 * 121.06016 * 180.02562 * 10 8 7 27 27 H 1.08995 * 109.47285 * 299.99905 * 1 2 3 28 28 H 1.09003 * 109.46916 * 59.99898 * 1 2 3 29 29 H 1.08997 * 109.47154 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47020 * 239.99996 * 2 1 3 31 31 H 1.09003 * 109.46916 * 120.00101 * 2 1 3 32 32 H 0.96992 * 120.00212 * 244.99672 * 6 3 2 33 33 H 1.08997 * 109.47533 * 45.00264 * 7 6 3 34 34 H 1.08996 * 109.47343 * 284.99785 * 7 6 3 35 35 H 1.08997 * 109.59329 * 247.49284 * 11 10 8 36 36 H 1.08991 * 109.59640 * 7.95168 * 11 10 8 37 37 H 1.08996 * 109.49198 * 174.15950 * 12 11 10 38 38 H 1.09000 * 109.48909 * 294.23331 * 12 11 10 39 39 H 1.09000 * 113.49392 * 156.97408 * 15 14 13 40 40 H 1.09006 * 113.54861 * 26.47414 * 15 14 13 41 41 H 0.97002 * 119.99753 * 354.99129 * 20 19 17 42 42 H 1.08993 * 113.48874 * 141.16922 * 25 16 15 43 43 H 1.08999 * 113.49290 * 271.68301 * 25 16 15 44 44 H 1.09004 * 109.74635 * 108.59185 * 26 10 8 45 45 H 1.09000 * 109.79022 * 347.89643 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 8 1.8385 2.3438 1.2370 5 8 1.8386 2.3438 -1.2370 6 7 3.7843 1.5653 0.0007 7 6 4.4675 0.9669 -1.1488 8 6 5.9401 1.2786 -1.0761 9 8 6.3761 1.9356 -0.1545 10 7 6.7728 0.8266 -2.0347 11 6 6.2693 0.0263 -3.1620 12 6 6.7503 0.6623 -4.4704 13 8 8.1736 0.8080 -4.4317 14 6 8.6431 1.6238 -3.3638 15 6 8.4203 3.1223 -3.5718 16 7 9.7207 3.1639 -4.2595 17 6 10.3014 3.9457 -5.2221 18 1 9.7220 4.7095 -5.7194 19 6 11.6347 3.7565 -5.5588 20 7 12.2218 4.5742 -6.4066 21 14 12.5956 2.3410 -4.8086 22 1 14.0184 2.4336 -5.2240 23 1 12.5066 2.4120 -3.3281 24 1 12.0258 1.0524 -5.2776 25 6 10.1211 1.9926 -3.4632 26 6 8.2166 1.1171 -1.9864 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.2982 1.8766 0.7621 33 1 4.0545 1.3765 -2.0706 34 1 4.3237 -0.1135 -1.1350 35 1 6.6525 -0.9914 -3.0878 36 1 5.1796 0.0114 -3.1419 37 1 6.4728 0.0236 -5.3089 38 1 6.2876 1.6419 -4.5902 39 1 8.4016 3.6919 -2.6426 40 1 7.5768 3.3508 -4.2234 41 1 11.7053 5.2643 -6.8516 42 1 10.7116 1.2677 -4.0233 43 1 10.5695 2.2519 -2.5041 44 1 8.7671 0.2087 -1.7411 45 1 8.4144 1.8816 -1.2351 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502413143.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:16 Heat of formation + Delta-G solvation = -101.925383 kcal Electronic energy + Delta-G solvation = -29531.939513 eV Core-core repulsion = 25292.450679 eV Total energy + Delta-G solvation = -4239.488834 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.97585 -40.46156 -38.21532 -38.07967 -37.05745 -35.90804 -35.76160 -34.63283 -33.99169 -31.89605 -29.76113 -28.93165 -27.35772 -26.59505 -24.92188 -24.56073 -23.24145 -21.14903 -20.42660 -20.23025 -19.63906 -19.10961 -18.14416 -17.92624 -17.65627 -17.28604 -17.14533 -16.71575 -16.44248 -16.26661 -15.79231 -15.61544 -15.40208 -15.20436 -15.07068 -14.98065 -14.59387 -14.37692 -14.08649 -13.77653 -13.47562 -13.35580 -13.29874 -13.22973 -13.13719 -13.07948 -12.87607 -12.70799 -12.38536 -12.35212 -12.19100 -11.87311 -11.58557 -11.44785 -11.34524 -11.08131 -10.96903 -10.74653 -10.51287 -9.64198 -9.23775 -8.69336 -5.51432 -0.76710 1.37632 1.43931 1.49560 1.55420 1.68021 1.90027 2.53383 2.54145 2.83449 2.86362 3.15122 3.20330 3.26419 3.37594 3.67203 3.74427 3.91533 3.96369 4.09758 4.16645 4.23537 4.31116 4.35956 4.41890 4.46863 4.47125 4.50051 4.58056 4.59934 4.67083 4.76365 4.81952 4.89852 4.89934 4.96761 5.09804 5.16962 5.25747 5.88046 5.89076 6.23484 6.28915 6.64249 6.97452 7.26874 8.19125 8.85898 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.025922 B = 0.002410 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.921516 B =11614.667852 C =11739.392834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.599 4.599 3 S 2.610 3.390 4 O -1.000 7.000 5 O -0.995 6.995 6 N -1.116 6.116 7 C 0.091 3.909 8 C 0.511 3.489 9 O -0.573 6.573 10 N -0.610 5.610 11 C 0.072 3.928 12 C 0.030 3.970 13 O -0.363 6.363 14 C 0.089 3.911 15 C 0.101 3.899 16 N -0.653 5.653 17 C -0.291 4.291 18 H 0.044 0.956 19 C -0.086 4.086 20 N -0.969 5.969 21 Si 1.110 2.890 22 H -0.302 1.302 23 H -0.254 1.254 24 H -0.270 1.270 25 C 0.103 3.897 26 C 0.110 3.890 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.169 0.831 31 H 0.160 0.840 32 H 0.422 0.578 33 H 0.123 0.877 34 H 0.154 0.846 35 H 0.111 0.889 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.043 0.957 39 H 0.050 0.950 40 H 0.039 0.961 41 H 0.244 0.756 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.105 0.895 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.063 -21.729 14.239 36.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.733 4.733 3 S 2.707 3.293 4 O -0.990 6.990 5 O -0.985 6.985 6 N -0.877 5.877 7 C -0.038 4.038 8 C 0.299 3.701 9 O -0.452 6.452 10 N -0.344 5.344 11 C -0.050 4.050 12 C -0.046 4.046 13 O -0.282 6.282 14 C 0.046 3.954 15 C -0.025 4.025 16 N -0.381 5.381 17 C -0.419 4.419 18 H 0.062 0.938 19 C -0.277 4.277 20 N -0.614 5.614 21 Si 0.935 3.065 22 H -0.230 1.230 23 H -0.179 1.179 24 H -0.197 1.197 25 C -0.021 4.021 26 C -0.014 4.014 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.125 0.875 30 H 0.187 0.813 31 H 0.178 0.822 32 H 0.259 0.741 33 H 0.141 0.859 34 H 0.171 0.829 35 H 0.129 0.871 36 H 0.156 0.844 37 H 0.154 0.846 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.078 0.922 43 H 0.097 0.903 44 H 0.123 0.877 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -23.714 -21.200 14.322 34.884 hybrid contribution -0.953 1.648 -0.271 1.923 sum -24.666 -19.551 14.051 34.469 Atomic orbital electron populations 1.21715 0.90395 1.06630 1.03555 1.30262 1.07143 1.20964 1.14955 1.04940 0.72365 0.79312 0.72683 1.93562 1.83290 1.75609 1.46586 1.93564 1.83582 1.74680 1.46672 1.55355 1.25832 1.78675 1.27801 1.21509 0.88580 1.02724 0.91027 1.21038 0.89464 0.78376 0.81243 1.90705 1.78157 1.40724 1.35576 1.48246 1.07473 1.53488 1.25188 1.22822 1.02807 0.95842 0.83512 1.23345 0.80211 1.01276 0.99774 1.87953 1.23152 1.67958 1.49116 1.22563 0.95464 0.89571 0.87769 1.23020 0.88791 0.95425 0.95293 1.45887 1.15432 1.34695 1.42115 1.19941 0.95799 1.13072 1.13060 0.93780 1.27213 0.95078 1.04834 1.00572 1.71032 1.36974 1.20656 1.32732 0.83271 0.73714 0.72738 0.76772 1.23026 1.17867 1.19658 1.22893 0.94597 0.88669 0.95975 1.21939 0.81306 1.03101 0.95035 0.91418 0.90884 0.87487 0.81269 0.82194 0.74070 0.85914 0.82863 0.87106 0.84352 0.84580 0.93899 0.93199 0.94279 0.94660 0.92160 0.90286 0.87719 0.88916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.62 9.92 71.98 0.71 0.09 16 2 C -0.60 -1.23 6.79 71.98 0.49 -0.74 16 3 S 2.61 35.63 5.46 -56.49 -0.31 35.32 16 4 O -1.00 -22.65 18.08 -127.65 -2.31 -24.96 16 5 O -1.00 -20.90 17.50 -127.65 -2.23 -23.14 16 6 N -1.12 -14.96 5.82 -190.79 -1.11 -16.07 16 7 C 0.09 0.86 4.98 85.63 0.43 1.29 16 8 C 0.51 9.79 7.78 87.66 0.68 10.47 16 9 O -0.57 -16.19 15.23 -3.03 -0.05 -16.24 16 10 N -0.61 -11.04 3.03 -817.88 -2.48 -13.52 16 11 C 0.07 0.73 6.50 86.33 0.56 1.29 16 12 C 0.03 0.58 6.90 72.06 0.50 1.07 16 13 O -0.36 -11.37 10.53 -148.98 -1.57 -12.94 16 14 C 0.09 2.90 1.27 -10.99 -0.01 2.88 16 15 C 0.10 4.11 7.91 83.31 0.66 4.76 16 16 N -0.65 -33.17 3.70 -739.91 -2.74 -35.91 16 17 C -0.29 -17.85 11.08 84.03 0.93 -16.92 16 18 H 0.04 2.94 8.05 -2.91 -0.02 2.91 16 19 C -0.09 -5.32 5.50 84.86 0.47 -4.85 16 20 N -0.97 -64.56 13.70 21.65 0.30 -64.27 16 21 Si 1.11 54.35 25.15 68.60 1.72 56.07 16 22 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 23 H -0.25 -10.93 6.18 99.48 0.61 -10.31 16 24 H -0.27 -12.21 6.53 99.48 0.65 -11.56 16 25 C 0.10 4.20 5.10 83.22 0.42 4.62 16 26 C 0.11 2.67 5.84 86.16 0.50 3.18 16 27 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 30 H 0.17 -0.80 8.14 -2.39 -0.02 -0.82 16 31 H 0.16 -0.30 8.14 -2.39 -0.02 -0.32 16 32 H 0.42 7.10 7.66 -96.75 -0.74 6.36 16 33 H 0.12 0.93 7.25 -2.39 -0.02 0.91 16 34 H 0.15 -0.34 7.98 -2.39 -0.02 -0.35 16 35 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.14 0.15 6.03 -2.39 -0.01 0.13 16 37 H 0.14 1.76 8.14 -2.39 -0.02 1.75 16 38 H 0.04 0.94 7.30 -2.39 -0.02 0.93 16 39 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 40 H 0.04 1.62 7.36 -2.38 -0.02 1.60 16 41 H 0.24 16.41 8.73 -92.71 -0.81 15.61 16 42 H 0.06 2.52 4.69 -2.39 -0.01 2.51 16 43 H 0.08 2.94 7.62 -2.39 -0.02 2.92 16 44 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 45 H 0.09 2.55 6.90 -2.39 -0.02 2.54 16 Total: -1.00 -98.44 370.24 -4.34 -102.78 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: 0.09 Total: 5.72 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 6.34 Total: 7.15 kcal Atomic # 7 Polarization: -123.73 SS G_CDS: -6.03 Total: -129.76 kcal Atomic # 8 Polarization: -71.12 SS G_CDS: -6.16 Total: -77.28 kcal Atomic # 14 Polarization: 54.35 SS G_CDS: 1.72 Total: 56.07 kcal Atomic # 16 Polarization: 35.63 SS G_CDS: -0.31 Total: 35.32 kcal Total: -98.44 -4.34 -102.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502413143.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.851 kcal (2) G-P(sol) polarization free energy of solvation -98.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds