Wall clock time and date at job start Wed Apr 1 2020 05:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46497 * 120.00176 * 2 1 4 4 C 1.52998 * 109.47390 * 269.99726 * 3 2 1 5 5 H 1.09004 * 109.46586 * 59.99964 * 4 3 2 6 6 O 1.42902 * 109.46898 * 300.00258 * 4 3 2 7 7 C 1.52996 * 109.47476 * 179.97438 * 4 3 2 8 8 N 1.46496 * 109.47212 * 185.00023 * 7 4 3 9 9 C 1.36939 * 119.99668 * 179.97438 * 8 7 4 10 10 H 1.07996 * 120.00293 * 0.02562 * 9 8 7 11 11 C 1.38819 * 119.99735 * 180.02562 * 9 8 7 12 12 N 1.31621 * 119.99825 * 0.02562 * 11 9 8 13 13 Si 1.86789 * 119.99937 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47530 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47385 * 120.00066 * 13 11 9 16 16 H 1.48504 * 109.47456 * 240.00131 * 13 11 9 17 17 C 1.34781 * 119.99841 * 179.97438 * 2 1 3 18 18 O 1.21513 * 120.00110 * 182.14906 * 17 2 1 19 19 C 1.48171 * 120.00372 * 2.14840 * 17 2 1 20 20 C 1.39307 * 119.72729 * 172.79003 * 19 17 2 21 21 C 1.38590 * 119.05934 * 180.02562 * 20 19 17 22 22 C 1.38620 * 118.48810 * 359.97438 * 21 20 19 23 23 C 1.50699 * 120.32511 * 180.02562 * 22 21 20 24 24 F 1.39902 * 109.47192 * 90.00098 * 23 22 21 25 25 F 1.39891 * 109.47744 * 210.00501 * 23 22 21 26 26 F 1.39907 * 109.47043 * 330.00577 * 23 22 21 27 27 C 1.38560 * 119.35378 * 0.02562 * 22 21 20 28 28 N 1.31516 * 120.90316 * 359.97438 * 27 22 21 29 29 H 1.08999 * 109.47184 * 263.77041 * 1 2 3 30 30 H 1.09000 * 109.46669 * 23.77538 * 1 2 3 31 31 H 1.09004 * 109.46890 * 143.77154 * 1 2 3 32 32 H 1.08999 * 109.46967 * 30.00351 * 3 2 1 33 33 H 1.09001 * 109.46933 * 149.99457 * 3 2 1 34 34 H 0.96697 * 114.00067 * 299.99442 * 6 4 3 35 35 H 1.09001 * 109.47033 * 305.00196 * 7 4 3 36 36 H 1.08996 * 109.46932 * 64.99881 * 7 4 3 37 37 H 0.97003 * 120.00097 * 0.02562 * 8 7 4 38 38 H 0.97003 * 119.99951 * 180.02562 * 12 11 9 39 39 H 1.07998 * 120.46470 * 359.97438 * 20 19 17 40 40 H 1.07998 * 120.75088 * 180.02562 * 21 20 19 41 41 H 1.08008 * 119.54929 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4527 1.7104 -1.4425 5 1 1.5002 1.8407 -1.9563 6 8 3.2249 0.7144 -2.1160 7 6 3.2171 3.0356 -1.4425 8 7 3.3571 3.5186 -2.8184 9 6 4.0105 4.6960 -3.0676 10 1 4.4230 5.2682 -2.2498 11 6 4.1426 5.1540 -4.3714 12 7 3.6395 4.4568 -5.3679 13 14 5.0345 6.7596 -4.7114 14 1 5.5035 7.3463 -3.4303 15 1 6.2011 6.5008 -5.5931 16 1 4.1087 7.7081 -5.3811 17 6 2.1389 -1.1673 0.0005 18 8 3.3534 -1.1677 0.0400 19 6 1.3989 -2.4501 -0.0470 20 6 2.0978 -3.6456 -0.1981 21 6 1.3917 -4.8373 -0.2414 22 6 0.0106 -4.7919 -0.1314 23 6 -0.7981 -6.0628 -0.1727 24 9 -0.9476 -6.5628 1.1253 25 9 -2.0586 -5.7961 -0.7177 26 9 -0.1388 -7.0096 -0.9641 27 6 -0.6190 -3.5666 0.0168 28 7 0.0756 -2.4504 0.0548 29 1 -0.3633 -0.1115 1.0216 30 1 -0.3633 0.9405 -0.4143 31 1 -0.3633 -0.8290 -0.6074 32 1 1.6085 2.0283 0.5139 33 1 3.1499 1.1383 0.5139 34 1 4.0874 0.5459 -1.7125 35 1 2.6694 3.7710 -0.8532 36 1 4.2053 2.8850 -1.0080 37 1 2.9862 3.0049 -3.5529 38 1 3.7321 4.7766 -6.2790 39 1 3.1746 -3.6436 -0.2812 40 1 1.9059 -5.7799 -0.3573 41 1 -1.6949 -3.5276 0.1032 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507494857.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:22 Heat of formation + Delta-G solvation = -161.515651 kcal Electronic energy + Delta-G solvation = -30008.244863 eV Core-core repulsion = 25088.871309 eV Total energy + Delta-G solvation = -4919.373554 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.69300 -48.20532 -48.15406 -41.32925 -39.51818 -37.31343 -35.50857 -34.02070 -33.70972 -32.47385 -31.29562 -29.55386 -27.50775 -26.87082 -25.37478 -24.47959 -23.54283 -22.55537 -21.20755 -20.32705 -19.05785 -19.03928 -19.00973 -17.70990 -17.27925 -17.14686 -16.42258 -15.97097 -15.68608 -15.32100 -15.05057 -14.96852 -14.95372 -14.65666 -14.59430 -14.41485 -14.38760 -14.29698 -14.21743 -13.97776 -13.54906 -13.50621 -13.01312 -12.91413 -12.59157 -12.45782 -12.27835 -12.09020 -11.51789 -10.93650 -10.82733 -10.78147 -10.74389 -10.42647 -10.12283 -9.97889 -9.90129 -9.75642 -9.51882 -8.88952 -8.54999 -6.90813 -5.73892 -3.03289 -0.22999 0.49726 2.02978 2.26893 2.67905 3.09517 3.24150 3.40256 3.44346 3.49442 3.52123 3.57420 3.84581 4.02854 4.10337 4.37051 4.47273 4.58355 4.82146 5.00862 5.03700 5.15703 5.18341 5.21651 5.30209 5.51348 5.56482 5.66546 5.69107 5.74613 5.98266 6.03500 6.24460 6.40486 6.53159 6.73926 6.94799 7.19768 7.70504 7.91997 8.17135 8.44321 9.55667 10.13635 10.49138 11.48607 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.025206 B = 0.001906 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.568290 B =14690.528673 C =14886.643159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.583 5.583 3 C 0.081 3.919 4 C 0.086 3.914 5 H 0.097 0.903 6 O -0.549 6.549 7 C 0.127 3.873 8 N -0.726 5.726 9 C -0.241 4.241 10 H 0.070 0.930 11 C -0.014 4.014 12 N -0.930 5.930 13 Si 0.908 3.092 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 C 0.569 3.431 18 O -0.524 6.524 19 C 0.121 3.879 20 C -0.112 4.112 21 C -0.027 4.027 22 C -0.226 4.226 23 C 0.516 3.484 24 F -0.173 7.173 25 F -0.172 7.172 26 F -0.174 7.174 27 C 0.147 3.853 28 N -0.447 5.447 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.374 0.626 35 H 0.025 0.975 36 H 0.022 0.978 37 H 0.388 0.612 38 H 0.255 0.745 39 H 0.163 0.837 40 H 0.156 0.844 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.563 -23.133 15.622 30.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.314 5.314 3 C -0.042 4.042 4 C 0.026 3.974 5 H 0.115 0.885 6 O -0.354 6.354 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.373 4.373 10 H 0.088 0.912 11 C -0.210 4.210 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.206 1.206 15 H -0.218 1.218 16 H -0.219 1.219 17 C 0.355 3.645 18 O -0.399 6.399 19 C -0.017 4.017 20 C -0.132 4.132 21 C -0.052 4.052 22 C -0.230 4.230 23 C 0.461 3.539 24 F -0.154 7.154 25 F -0.153 7.153 26 F -0.155 7.155 27 C -0.013 4.013 28 N -0.158 5.158 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.122 0.878 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.221 0.779 35 H 0.043 0.957 36 H 0.040 0.960 37 H 0.222 0.778 38 H 0.064 0.936 39 H 0.181 0.819 40 H 0.174 0.826 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -11.777 -22.165 15.387 29.440 hybrid contribution 0.928 -0.204 -0.253 0.983 sum -10.849 -22.369 15.134 29.105 Atomic orbital electron populations 1.22412 0.77998 1.03814 1.02734 1.47569 1.07949 1.05325 1.70515 1.22399 0.98422 0.84307 0.99043 1.22500 0.95830 0.88365 0.90749 0.88511 1.86547 1.33057 1.58928 1.56850 1.21231 0.96805 0.92404 0.89788 1.42258 1.68098 1.25264 1.01410 1.19269 1.28075 0.97722 0.92196 0.91185 1.24772 1.01549 0.99074 0.95636 1.69695 1.50357 1.39183 0.98595 0.86106 0.79027 0.83227 0.77745 1.20573 1.21848 1.21866 1.17665 0.86520 0.82671 0.77662 1.90780 1.12580 1.86491 1.50093 1.21638 0.89923 0.94867 0.95232 1.22180 1.03113 0.90698 0.97258 1.21474 0.91862 1.00100 0.91809 1.21272 0.96018 0.94523 1.11192 1.18032 0.77971 0.83825 0.74053 1.93254 1.95747 1.88790 1.37635 1.93221 1.42430 1.93807 1.85875 1.93222 1.80639 1.67136 1.74485 1.22852 1.01253 0.85898 0.91255 1.68409 1.07102 1.28207 1.12101 0.92428 0.91657 0.87769 0.89140 0.89191 0.77861 0.95707 0.96039 0.77753 0.93555 0.81915 0.82622 0.80757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.70 9.31 59.85 0.56 1.26 16 2 N -0.58 -7.12 2.83 -182.57 -0.52 -7.64 16 3 C 0.08 1.04 5.13 -4.04 -0.02 1.02 16 4 C 0.09 1.43 3.27 -26.73 -0.09 1.34 16 5 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 6 O -0.55 -10.17 12.14 -41.03 -0.50 -10.67 16 7 C 0.13 2.51 5.90 -4.05 -0.02 2.49 16 8 N -0.73 -18.88 5.55 -59.91 -0.33 -19.21 16 9 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 10 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 11 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 12 N -0.93 -28.87 13.06 55.49 0.72 -28.14 16 13 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 16 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 17 C 0.57 7.49 7.13 -12.18 -0.09 7.40 16 18 O -0.52 -8.04 14.85 -0.44 -0.01 -8.04 16 19 C 0.12 1.29 6.62 -83.01 -0.55 0.74 16 20 C -0.11 -0.97 9.63 -39.05 -0.38 -1.35 16 21 C -0.03 -0.18 9.51 -39.31 -0.37 -0.55 16 22 C -0.23 -1.56 5.47 -104.36 -0.57 -2.14 16 23 C 0.52 3.48 3.38 36.01 0.12 3.60 16 24 F -0.17 -1.25 17.30 2.25 0.04 -1.21 16 25 F -0.17 -1.20 16.48 2.25 0.04 -1.17 16 26 F -0.17 -1.26 16.52 2.25 0.04 -1.22 16 27 C 0.15 1.04 10.56 -17.57 -0.19 0.85 16 28 N -0.45 -4.07 6.04 -9.80 -0.06 -4.13 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.59 8.02 -51.93 -0.42 0.17 16 31 H 0.10 1.02 5.26 -52.09 -0.27 0.74 16 32 H 0.09 0.96 8.07 -51.93 -0.42 0.54 16 33 H 0.09 1.19 7.39 -51.93 -0.38 0.80 16 34 H 0.37 6.41 8.52 45.56 0.39 6.80 16 35 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.39 10.90 7.67 -40.82 -0.31 10.59 16 38 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.16 1.32 7.66 -52.49 -0.40 0.92 16 40 H 0.16 0.66 7.68 -52.49 -0.40 0.26 16 41 H 0.18 0.78 7.61 -52.48 -0.40 0.38 16 LS Contribution 363.64 15.07 5.48 5.48 Total: -1.00 -34.15 363.64 -5.82 -39.97 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -3.86 Total: 11.18 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: -1.84 Total: 7.11 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.18 Total: -59.12 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.50 Total: -18.71 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.11 Total: -3.60 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.15 -5.82 -39.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507494857.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.542 kcal (2) G-P(sol) polarization free energy of solvation -34.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds