Wall clock time and date at job start Wed Apr 1 2020 05:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34225 * 117.00077 * 2 1 4 4 O 1.20828 * 120.00351 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00039 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47102 * 180.02562 * 5 3 2 7 7 N 1.46503 * 109.47380 * 180.02562 * 6 5 3 8 8 C 1.36839 * 119.99783 * 264.90593 * 7 6 5 9 9 H 1.07996 * 120.00194 * 139.06371 * 8 7 6 10 10 C 1.39006 * 119.99913 * 319.06392 * 8 7 6 11 11 N 1.31402 * 120.00049 * 165.84964 * 10 8 7 12 12 Si 1.86797 * 119.99800 * 345.84220 * 10 8 7 13 13 H 1.48500 * 109.47107 * 91.28970 * 12 10 8 14 14 H 1.48499 * 109.47391 * 211.28543 * 12 10 8 15 15 H 1.48503 * 109.47557 * 331.28750 * 12 10 8 16 16 C 1.34774 * 119.99830 * 84.89633 * 7 6 5 17 17 O 1.21799 * 120.00516 * 4.84613 * 16 7 6 18 18 C 1.46153 * 119.99815 * 184.84190 * 16 7 6 19 19 C 1.37982 * 125.87105 * 174.05346 * 18 16 7 20 20 C 1.39716 * 106.83322 * 180.02562 * 19 18 16 21 21 C 1.37668 * 106.98232 * 0.02562 * 20 19 18 22 22 C 1.47635 * 125.73699 * 179.97438 * 21 20 19 23 23 C 1.41189 * 126.38124 * 0.13870 * 22 21 20 24 24 N 1.30535 * 108.10247 * 180.27042 * 23 22 21 25 25 N 1.39948 * 108.86414 * 359.76150 * 24 23 22 26 26 C 1.46505 * 125.80003 * 180.02562 * 25 24 23 27 27 C 1.34655 * 108.40160 * 359.97438 * 25 24 23 28 28 O 1.34372 * 108.52764 * 0.22842 * 21 20 19 29 29 H 1.09003 * 109.47462 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46690 * 299.99203 * 1 2 3 31 31 H 1.09001 * 109.47763 * 59.99328 * 1 2 3 32 32 H 1.09001 * 109.46981 * 60.00938 * 5 3 2 33 33 H 1.09002 * 109.47364 * 300.00285 * 5 3 2 34 34 H 1.09002 * 109.47210 * 59.99895 * 6 5 3 35 35 H 1.09002 * 109.46996 * 300.00206 * 6 5 3 36 36 H 0.96995 * 119.99781 * 179.97438 * 11 10 8 37 37 H 1.08002 * 126.57934 * 0.07512 * 19 18 16 38 38 H 1.08001 * 126.50730 * 180.02562 * 20 19 18 39 39 H 1.08001 * 125.94587 * 0.02963 * 23 22 21 40 40 H 1.08998 * 109.46971 * 269.97427 * 26 25 24 41 41 H 1.09002 * 109.46788 * 29.97475 * 26 25 24 42 42 H 1.09000 * 109.46770 * 149.97167 * 26 25 24 43 43 H 1.07999 * 126.30474 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8188 -0.0010 8 6 6.1418 2.9588 1.1789 9 1 7.0541 2.4055 1.3461 10 6 5.6571 3.8132 2.1624 11 7 6.1351 3.7466 3.3846 12 14 4.3263 5.0564 1.7465 13 1 2.9918 4.4559 1.9987 14 1 4.4941 6.2637 2.5947 15 1 4.4350 5.4379 0.3154 16 6 6.1405 2.7513 -1.1642 17 8 5.5350 2.7155 -2.2204 18 6 7.6017 2.7212 -1.1582 19 6 8.4111 2.5377 -2.2605 20 6 9.7311 2.5779 -1.8044 21 6 9.6804 2.7832 -0.4440 22 6 10.8459 2.8927 0.4556 23 6 12.2044 2.8093 0.0801 24 7 12.9316 2.9479 1.1552 25 7 12.0844 3.1295 2.2542 26 6 12.5109 3.3218 3.6425 27 6 10.8106 3.0986 1.8187 28 8 8.3916 2.8616 -0.0718 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3635 0.5139 -0.8899 32 1 3.9556 0.7810 -0.8909 33 1 3.9564 0.7805 0.8891 34 1 3.6107 3.2356 0.8907 35 1 3.6100 3.2367 -0.8893 36 1 5.7971 4.3430 4.0707 37 1 8.0866 2.3920 -3.2802 38 1 10.6221 2.4686 -2.4049 39 1 12.5769 2.6538 -0.9217 40 1 12.5910 2.3530 4.1355 41 1 13.4807 3.8192 3.6590 42 1 11.7784 3.9364 4.1658 43 1 9.9243 3.2093 2.4259 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535417747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:15 Heat of formation + Delta-G solvation = -27.684901 kcal Electronic energy + Delta-G solvation = -30227.579240 eV Core-core repulsion = 25855.865763 eV Total energy + Delta-G solvation = -4371.713476 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 5.03 seconds Orbital eigenvalues (eV) -43.26242 -41.99771 -41.66202 -40.46334 -37.76829 -37.08368 -34.58709 -34.27748 -33.62897 -32.90550 -32.09410 -29.79251 -28.76031 -27.64026 -26.88572 -25.83657 -23.72877 -22.93309 -22.00948 -21.58296 -21.27921 -20.82257 -19.83525 -18.85693 -18.24742 -18.11984 -17.81858 -17.56036 -17.07348 -16.76404 -16.51784 -16.33961 -15.96610 -15.59648 -15.39072 -15.27554 -14.66725 -14.51161 -14.31342 -14.11940 -14.03126 -13.79934 -13.70034 -13.65859 -13.60119 -13.53765 -13.09755 -12.99895 -12.93193 -12.62331 -12.08926 -11.91285 -11.89175 -11.79344 -11.68722 -11.34222 -10.86964 -10.83513 -10.52222 -10.40145 -9.90256 -8.55428 -8.53526 -6.20927 0.02151 0.80492 1.03964 1.15589 1.25121 1.30200 1.34901 1.48396 1.57143 1.97733 2.12616 2.24480 2.32806 2.60340 2.94749 3.46277 3.65413 3.76982 3.93730 3.99136 4.04199 4.15036 4.20612 4.28660 4.30182 4.32369 4.35300 4.43347 4.57982 4.63419 4.66483 4.67174 4.69843 4.75915 4.89201 5.09288 5.13444 5.24373 5.30958 5.51016 5.70557 5.90941 6.01460 6.20812 6.24092 6.60016 6.60337 6.87170 7.24854 7.55117 8.57129 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.013547 B = 0.003125 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.375256 B = 8959.050904 C = 9935.060691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.359 6.359 3 C 0.476 3.524 4 O -0.539 6.539 5 C -0.116 4.116 6 C 0.110 3.890 7 N -0.461 5.461 8 C -0.332 4.332 9 H 0.107 0.893 10 C 0.046 3.954 11 N -0.881 5.881 12 Si 0.908 3.092 13 H -0.264 1.264 14 H -0.279 1.279 15 H -0.276 1.276 16 C 0.553 3.447 17 O -0.596 6.596 18 C -0.087 4.087 19 C -0.129 4.129 20 C -0.211 4.211 21 C 0.077 3.923 22 C -0.203 4.203 23 C 0.091 3.909 24 N -0.318 5.318 25 N -0.366 5.366 26 C 0.090 3.910 27 C 0.088 3.912 28 O -0.140 6.140 29 H 0.138 0.862 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.119 0.881 33 H 0.124 0.876 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.281 0.719 37 H 0.167 0.833 38 H 0.189 0.811 39 H 0.223 0.777 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.949 -5.356 -1.063 8.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.320 3.680 4 O -0.430 6.430 5 C -0.155 4.155 6 C -0.013 4.013 7 N -0.180 5.180 8 C -0.460 4.460 9 H 0.124 0.876 10 C -0.160 4.160 11 N -0.518 5.518 12 Si 0.735 3.265 13 H -0.190 1.190 14 H -0.206 1.206 15 H -0.201 1.201 16 C 0.345 3.655 17 O -0.483 6.483 18 C -0.140 4.140 19 C -0.150 4.150 20 C -0.230 4.230 21 C 0.022 3.978 22 C -0.215 4.215 23 C -0.096 4.096 24 N -0.138 5.138 25 N -0.145 5.145 26 C -0.050 4.050 27 C -0.063 4.063 28 O -0.034 6.034 29 H 0.156 0.844 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.137 0.863 33 H 0.142 0.858 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.184 0.816 38 H 0.207 0.793 39 H 0.239 0.761 40 H 0.110 0.890 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 6.532 -4.904 -0.346 8.175 hybrid contribution -1.986 0.894 -0.132 2.182 sum 4.546 -4.009 -0.478 6.080 Atomic orbital electron populations 1.23620 0.74503 1.06012 1.02596 1.86505 1.25321 1.32019 1.83620 1.23674 0.91859 0.81451 0.71027 1.90642 1.67864 1.37430 1.47014 1.21614 0.87364 0.99037 1.07459 1.21456 0.81791 0.95844 1.02204 1.43675 1.04540 1.63680 1.06129 1.19197 1.09752 1.26072 0.90946 0.87612 1.25653 0.98459 0.96942 0.94913 1.69670 1.43297 1.37538 1.01278 0.86472 0.80689 0.80517 0.78779 1.19016 1.20552 1.20098 1.17113 0.84651 0.80202 0.83514 1.90717 1.68506 1.57726 1.31360 1.22090 0.90963 1.15065 0.85858 1.22169 0.92276 1.01699 0.98838 1.22005 0.98198 1.10241 0.92523 1.20748 0.81783 1.01730 0.93536 1.18181 0.90912 1.20896 0.91520 1.24306 0.88595 0.97221 0.99438 1.77102 1.18335 1.25176 0.93212 1.48638 1.03269 1.53663 1.08939 1.22307 1.03802 1.04536 0.74339 1.23299 0.89586 0.97838 0.95543 1.84615 1.15673 1.68729 1.34404 0.84386 0.92039 0.91841 0.86321 0.85808 0.91247 0.91151 0.90876 0.81570 0.79332 0.76068 0.88978 0.87687 0.87719 0.79988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 113.37 1.20 1.73 16 2 O -0.36 -10.43 10.56 -51.37 -0.54 -10.97 16 3 C 0.48 16.89 7.96 71.24 0.57 17.46 16 4 O -0.54 -22.03 15.73 21.96 0.35 -21.69 16 5 C -0.12 -4.31 6.10 29.85 0.18 -4.12 16 6 C 0.11 4.95 3.21 86.38 0.28 5.23 16 7 N -0.46 -22.38 2.16 -640.60 -1.39 -23.77 16 8 C -0.33 -17.07 8.52 84.10 0.72 -16.35 16 9 H 0.11 5.75 6.00 -2.91 -0.02 5.73 16 10 C 0.05 2.38 5.39 84.94 0.46 2.84 16 11 N -0.88 -46.22 13.96 21.67 0.30 -45.91 16 12 Si 0.91 43.10 24.78 68.60 1.70 44.80 16 13 H -0.26 -12.31 6.61 99.48 0.66 -11.65 16 14 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 15 H -0.28 -13.74 7.10 99.48 0.71 -13.03 16 16 C 0.55 26.65 7.55 86.30 0.65 27.30 16 17 O -0.60 -29.73 16.51 -4.66 -0.08 -29.81 16 18 C -0.09 -3.82 6.84 24.27 0.17 -3.66 16 19 C -0.13 -4.59 10.65 22.57 0.24 -4.35 16 20 C -0.21 -6.33 10.63 22.49 0.24 -6.10 16 21 C 0.08 2.70 7.20 24.62 0.18 2.88 16 22 C -0.20 -6.23 6.12 -20.15 -0.12 -6.36 16 23 C 0.09 2.24 11.77 85.61 1.01 3.25 16 24 N -0.32 -8.38 12.51 -56.30 -0.70 -9.08 16 25 N -0.37 -9.23 3.99 -367.57 -1.47 -10.69 16 26 C 0.09 1.40 11.45 127.77 1.46 2.87 16 27 C 0.09 2.62 11.51 84.18 0.97 3.59 16 28 O -0.14 -6.09 7.49 -10.71 -0.08 -6.17 16 29 H 0.14 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 31 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 32 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16 33 H 0.12 4.36 8.14 -2.39 -0.02 4.34 16 34 H 0.07 3.28 3.23 -2.39 -0.01 3.28 16 35 H 0.07 3.29 7.47 -2.39 -0.02 3.27 16 36 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 37 H 0.17 5.28 8.06 -2.91 -0.02 5.26 16 38 H 0.19 3.88 8.06 -2.91 -0.02 3.86 16 39 H 0.22 3.60 8.06 -2.91 -0.02 3.58 16 40 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.18 5.73 8.06 -2.91 -0.02 5.71 16 Total: -1.00 -70.74 376.32 7.29 -63.45 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 1.01 Total: 23.65 kcal Atomic # 6 Polarization: 18.00 SS G_CDS: 8.19 Total: 26.19 kcal Atomic # 7 Polarization: -86.21 SS G_CDS: -3.26 Total: -89.46 kcal Atomic # 8 Polarization: -68.27 SS G_CDS: -0.35 Total: -68.63 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.70 Total: 44.80 kcal Total: -70.74 7.29 -63.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535417747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.769 kcal (2) G-P(sol) polarization free energy of solvation -70.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.04 seconds