Wall clock time and date at job start Wed Apr 1 2020 04:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81395 * 109.46986 * 2 1 4 4 O 1.42105 * 110.54530 * 291.62628 * 3 2 1 5 5 O 1.42101 * 110.54333 * 68.37799 * 3 2 1 6 6 N 1.65599 * 104.44748 * 180.02562 * 3 2 1 7 7 C 1.46929 * 120.63010 * 269.72153 * 6 3 2 8 8 C 1.52768 * 109.00653 * 233.58608 * 7 6 3 9 9 C 1.53043 * 109.38121 * 305.58480 * 8 7 6 10 10 C 1.50695 * 109.44663 * 181.25608 * 9 8 7 11 11 O 1.21287 * 120.00096 * 239.94018 * 10 9 8 12 12 N 1.34780 * 120.00205 * 59.94127 * 10 9 8 13 13 C 1.46497 * 119.99875 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47032 * 180.02562 * 13 12 10 15 15 O 1.21297 * 119.99658 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00239 * 180.02562 * 14 13 12 17 17 C 1.37099 * 120.00159 * 179.97438 * 16 14 13 18 18 H 1.08005 * 119.99881 * 359.97438 * 17 16 14 19 19 C 1.38953 * 120.00208 * 179.97438 * 17 16 14 20 20 N 1.31409 * 119.99555 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00160 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47211 * 89.99760 * 21 19 17 23 23 H 1.48492 * 109.47106 * 210.00215 * 21 19 17 24 24 H 1.48510 * 109.46999 * 330.00066 * 21 19 17 25 25 C 1.53041 * 109.53583 * 61.24343 * 9 8 7 26 26 C 1.46927 * 120.63350 * 90.00165 * 6 3 2 27 27 H 1.09004 * 109.47080 * 299.99725 * 1 2 3 28 28 H 1.09005 * 109.47285 * 59.99790 * 1 2 3 29 29 H 1.09003 * 109.47612 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46593 * 240.00075 * 2 1 3 31 31 H 1.08994 * 109.46870 * 120.00443 * 2 1 3 32 32 H 1.09003 * 109.58784 * 353.41377 * 7 6 3 33 33 H 1.08999 * 109.58859 * 113.84676 * 7 6 3 34 34 H 1.08996 * 109.55959 * 185.55354 * 8 7 6 35 35 H 1.08993 * 109.36018 * 65.49718 * 8 7 6 36 36 H 1.08999 * 109.45958 * 301.22114 * 9 8 7 37 37 H 0.96996 * 119.99584 * 0.02562 * 12 10 9 38 38 H 1.09001 * 109.47425 * 299.99269 * 13 12 10 39 39 H 1.09001 * 109.47854 * 59.99884 * 13 12 10 40 40 H 0.96993 * 119.99940 * 359.97438 * 16 14 13 41 41 H 0.97001 * 119.99805 * 179.97438 * 20 19 17 42 42 H 1.09004 * 109.49589 * 178.68015 * 25 9 8 43 43 H 1.09003 * 109.49766 * 58.58795 * 25 9 8 44 44 H 1.08996 * 109.58346 * 246.15832 * 26 6 3 45 45 H 1.09002 * 109.58555 * 6.43931 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 8 1.8385 2.3439 -1.2370 5 8 1.8385 2.3438 1.2370 6 7 3.7842 1.5652 -0.0007 7 6 4.5310 1.5056 1.2632 8 6 5.6202 2.5767 1.2485 9 6 6.4855 2.4040 -0.0019 10 6 7.5793 3.4406 -0.0022 11 8 7.6583 4.2387 -0.9121 12 7 8.4699 3.4809 1.0086 13 6 9.5329 4.4890 1.0085 14 6 10.3867 4.3189 2.2386 15 8 10.1319 3.4420 3.0371 16 7 11.4326 5.1416 2.4521 17 6 12.2090 4.9871 3.5714 18 1 11.9821 4.2064 4.2824 19 6 13.2877 5.8350 3.7913 20 7 13.5639 6.7845 2.9259 21 14 14.3459 5.6240 5.3160 22 1 15.4604 4.6886 5.0196 23 1 14.8995 6.9412 5.7204 24 1 13.5189 5.0745 6.4204 25 6 5.6191 2.5766 -1.2516 26 6 4.5295 1.4999 -1.2653 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.8531 1.6874 2.0972 33 1 4.9902 0.5229 1.3704 34 1 6.2423 2.4768 2.1380 35 1 5.1568 3.5632 1.2369 36 1 6.9289 1.4083 -0.0020 37 1 8.4070 2.8424 1.7361 38 1 10.1502 4.3661 0.1186 39 1 9.0895 5.4847 1.0084 40 1 11.6361 5.8429 1.8138 41 1 14.3167 7.3767 3.0795 42 1 6.2405 2.4767 -2.1417 43 1 5.1558 3.5631 -1.2397 44 1 4.9884 0.5167 -1.3685 45 1 3.8500 1.6754 -2.0993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001544135942.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:56 Heat of formation + Delta-G solvation = -183.846594 kcal Electronic energy + Delta-G solvation = -28421.415119 eV Core-core repulsion = 24178.373914 eV Total energy + Delta-G solvation = -4243.041204 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 3.95 seconds Orbital eigenvalues (eV) -41.32474 -40.11871 -38.77407 -38.24782 -37.00709 -36.25879 -35.32229 -33.99916 -33.72754 -33.34808 -32.05053 -29.46123 -26.89522 -25.76487 -24.77149 -24.29526 -22.25638 -21.38513 -21.01501 -20.08289 -19.72255 -19.02193 -18.35241 -17.44221 -17.27115 -17.22459 -16.91613 -16.71406 -16.34563 -15.82311 -15.75759 -15.66131 -15.28957 -15.08895 -14.99898 -14.55745 -14.43176 -14.02194 -13.97174 -13.62574 -13.54652 -13.42943 -13.41197 -13.38082 -13.20201 -12.93129 -12.90416 -12.46142 -12.45482 -12.38849 -12.14529 -12.12833 -11.75445 -11.60547 -11.56945 -11.40658 -10.88391 -10.55880 -10.19713 -10.08439 -9.93266 -8.51372 -6.01670 -0.75254 1.36307 1.42900 1.55510 1.58593 1.65829 1.90654 2.05036 2.32438 2.92095 3.12462 3.13734 3.15847 3.51604 3.68333 3.76929 3.79503 3.92673 4.02772 4.16582 4.20645 4.34764 4.40223 4.41420 4.43583 4.45248 4.70338 4.73126 4.75651 4.82200 4.83903 4.87255 4.93702 5.10766 5.16566 5.24752 5.27439 5.36815 5.38985 5.64697 5.91353 6.45575 6.55408 7.02916 7.19032 7.44046 7.93402 8.65480 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.028795 B = 0.001855 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.165656 B =15087.548986 C =15623.761962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.601 4.601 3 S 2.598 3.402 4 O -0.995 6.995 5 O -0.995 6.995 6 N -1.003 6.003 7 C 0.119 3.881 8 C -0.128 4.128 9 C -0.094 4.094 10 C 0.512 3.488 11 O -0.584 6.584 12 N -0.706 5.706 13 C 0.119 3.881 14 C 0.434 3.566 15 O -0.621 6.621 16 N -0.561 5.561 17 C -0.337 4.337 18 H 0.088 0.912 19 C -0.012 4.012 20 N -0.917 5.917 21 Si 0.998 3.002 22 H -0.270 1.270 23 H -0.273 1.273 24 H -0.269 1.269 25 C -0.112 4.112 26 C 0.120 3.880 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.159 0.841 31 H 0.158 0.842 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.135 0.865 37 H 0.415 0.585 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.398 0.602 41 H 0.279 0.721 42 H 0.084 0.916 43 H 0.044 0.956 44 H 0.111 0.889 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.487 -17.817 -7.698 29.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.734 4.734 3 S 2.697 3.303 4 O -0.985 6.985 5 O -0.986 6.986 6 N -0.841 5.841 7 C -0.005 4.005 8 C -0.168 4.168 9 C -0.115 4.115 10 C 0.300 3.700 11 O -0.464 6.464 12 N -0.360 5.360 13 C -0.009 4.009 14 C 0.221 3.779 15 O -0.509 6.509 16 N -0.196 5.196 17 C -0.466 4.466 18 H 0.106 0.894 19 C -0.213 4.213 20 N -0.557 5.557 21 Si 0.821 3.179 22 H -0.195 1.195 23 H -0.198 1.198 24 H -0.194 1.194 25 C -0.152 4.152 26 C -0.005 4.005 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.123 0.877 30 H 0.177 0.823 31 H 0.176 0.824 32 H 0.115 0.885 33 H 0.131 0.869 34 H 0.111 0.889 35 H 0.067 0.933 36 H 0.153 0.847 37 H 0.254 0.746 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.232 0.768 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.063 0.937 44 H 0.129 0.871 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -22.895 -16.826 -7.803 29.465 hybrid contribution 1.080 0.268 0.608 1.268 sum -21.814 -16.559 -7.195 28.317 Atomic orbital electron populations 1.21716 0.90652 1.06487 1.03449 1.30302 1.06875 1.21911 1.14337 1.05205 0.73171 0.79241 0.72705 1.93541 1.83725 1.74818 1.46442 1.93543 1.83725 1.74847 1.46475 1.57610 1.23757 1.90178 1.12568 1.21534 0.94059 1.00248 0.84676 1.21849 0.97756 1.00234 0.96958 1.21324 0.93096 0.99107 0.97927 1.21381 0.82506 0.85626 0.80484 1.90675 1.75175 1.43150 1.37445 1.45766 1.29099 1.34976 1.26145 1.20752 0.89936 0.93832 0.96343 1.20400 0.83855 0.84535 0.89150 1.90465 1.73382 1.37418 1.49675 1.41865 1.25412 1.29894 1.22416 1.19752 1.09076 1.16705 1.01080 0.89412 1.26153 0.98467 0.94760 1.01886 1.69685 1.30117 1.18647 1.37226 0.84848 0.77858 0.77936 0.77224 1.19489 1.19799 1.19379 1.21676 0.97000 0.99500 0.97022 1.21635 0.94070 1.00166 0.84582 0.91244 0.91169 0.87678 0.82320 0.82399 0.88485 0.86923 0.88914 0.93270 0.84707 0.74600 0.88942 0.89446 0.76812 0.91108 0.89708 0.93699 0.87097 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 9.92 71.98 0.71 -0.35 16 2 C -0.60 -3.13 6.90 71.98 0.50 -2.64 16 3 S 2.60 40.73 5.45 -56.49 -0.31 40.42 16 4 O -0.99 -22.99 16.59 -127.65 -2.12 -25.11 16 5 O -1.00 -23.26 16.58 -127.65 -2.12 -25.38 16 6 N -1.00 -13.24 3.23 -513.83 -1.66 -14.90 16 7 C 0.12 1.44 6.40 86.22 0.55 1.99 16 8 C -0.13 -2.32 5.25 30.53 0.16 -2.16 16 9 C -0.09 -1.80 2.49 -11.51 -0.03 -1.83 16 10 C 0.51 14.95 7.15 87.65 0.63 15.58 16 11 O -0.58 -21.46 15.98 -3.05 -0.05 -21.51 16 12 N -0.71 -21.94 5.41 -466.79 -2.53 -24.47 16 13 C 0.12 4.32 6.15 85.63 0.53 4.85 16 14 C 0.43 19.69 7.85 87.66 0.69 20.38 16 15 O -0.62 -31.18 15.24 -3.08 -0.05 -31.23 16 16 N -0.56 -27.99 5.29 -306.97 -1.62 -29.61 16 17 C -0.34 -18.41 9.68 84.04 0.81 -17.59 16 18 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 19 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 20 N -0.92 -48.67 13.05 21.66 0.28 -48.39 16 21 Si 1.00 41.47 29.55 68.60 2.03 43.50 16 22 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 23 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 25 C -0.11 -2.16 4.65 30.67 0.14 -2.02 16 26 C 0.12 1.44 6.43 86.36 0.56 2.00 16 27 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.16 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.16 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.10 1.23 6.85 -2.39 -0.02 1.22 16 33 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.09 1.56 7.52 -2.39 -0.02 1.54 16 35 H 0.05 1.14 8.14 -2.39 -0.02 1.13 16 36 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.42 12.26 6.83 -92.71 -0.63 11.63 16 38 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 39 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 40 H 0.40 19.23 7.90 -92.71 -0.73 18.50 16 41 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 42 H 0.08 1.61 8.07 -2.38 -0.02 1.59 16 43 H 0.04 1.14 8.13 -2.39 -0.02 1.12 16 44 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.10 1.20 6.86 -2.39 -0.02 1.18 16 Total: -1.00 -80.18 383.27 -2.76 -82.94 By element: Atomic # 1 Polarization: 36.01 SS G_CDS: -0.34 Total: 35.67 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: 5.72 Total: 18.06 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -5.52 Total: -117.37 kcal Atomic # 8 Polarization: -98.89 SS G_CDS: -4.33 Total: -103.22 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Atomic # 16 Polarization: 40.73 SS G_CDS: -0.31 Total: 40.42 kcal Total: -80.18 -2.76 -82.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544135942.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.903 kcal (2) G-P(sol) polarization free energy of solvation -80.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.95 seconds