Wall clock time and date at job start Wed Apr 1 2020 06:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42103 * 108.57662 * 2 1 4 4 O 1.42097 * 108.57752 * 131.02701 * 2 1 3 5 5 C 1.81393 * 101.91953 * 245.51438 * 2 1 3 6 6 C 1.53007 * 109.47143 * 180.02562 * 5 2 1 7 7 C 1.50699 * 109.47313 * 180.02562 * 6 5 2 8 8 O 1.21285 * 119.99855 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00468 * 180.02562 * 7 6 5 10 10 C 1.46494 * 120.00457 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.47114 * 179.97438 * 10 9 7 12 12 H 1.08998 * 112.74664 * 284.22879 * 11 10 9 13 13 C 1.53514 * 113.47471 * 153.37871 * 11 10 9 14 14 C 1.53510 * 83.57625 * 219.21215 * 13 11 10 15 15 N 1.47480 * 113.47407 * 55.00269 * 11 10 9 16 16 C 1.46907 * 110.99537 * 253.46701 * 15 11 10 17 17 C 1.50704 * 109.46735 * 170.00005 * 16 15 11 18 18 O 1.21291 * 119.99990 * 0.02562 * 17 16 15 19 19 N 1.34784 * 119.99675 * 179.97438 * 17 16 15 20 20 C 1.37090 * 119.99762 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00284 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99822 * 180.02562 * 20 19 17 23 23 N 1.31415 * 120.00034 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00021 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47066 * 60.00313 * 24 22 20 26 26 H 1.48504 * 109.47209 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47525 * 300.00423 * 24 22 20 28 28 H 1.09001 * 109.47190 * 174.48543 * 1 2 3 29 29 H 1.09004 * 109.47089 * 294.48676 * 1 2 3 30 30 H 1.09004 * 109.47568 * 54.48686 * 1 2 3 31 31 H 1.08999 * 109.47264 * 299.99812 * 5 2 1 32 32 H 1.08994 * 109.47759 * 59.99990 * 5 2 1 33 33 H 1.09000 * 109.46777 * 299.99390 * 6 5 2 34 34 H 1.08998 * 109.46915 * 59.99787 * 6 5 2 35 35 H 0.97004 * 119.99678 * 359.97438 * 9 7 6 36 36 H 1.08999 * 109.47205 * 299.99642 * 10 9 7 37 37 H 1.08998 * 109.47289 * 60.00007 * 10 9 7 38 38 H 1.08999 * 114.17147 * 332.85337 * 13 11 10 39 39 H 1.08997 * 114.16805 * 105.56295 * 13 11 10 40 40 H 1.09005 * 113.47721 * 271.26147 * 14 13 11 41 41 H 1.08994 * 113.53388 * 140.79994 * 14 13 11 42 42 H 1.08995 * 109.47050 * 289.99737 * 16 15 11 43 43 H 1.08999 * 109.47192 * 50.00398 * 16 15 11 44 44 H 0.96998 * 119.99820 * 0.02562 * 19 17 16 45 45 H 0.96999 * 119.99700 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 1.0161 5 6 2.1886 -0.7356 -1.6152 6 6 3.7054 -0.8195 -1.7979 7 6 4.0167 -1.4301 -3.1401 8 8 3.1143 -1.7655 -3.8777 9 7 5.2979 -1.6043 -3.5204 10 6 5.6005 -2.1983 -4.8249 11 6 7.1173 -2.2821 -5.0076 12 1 7.5679 -1.3170 -5.2388 13 6 7.5579 -3.4069 -5.9549 14 6 8.6951 -3.5827 -4.9390 15 7 7.8012 -3.0042 -3.9186 16 6 8.5303 -2.0735 -3.0466 17 6 9.0076 -2.8052 -1.8186 18 8 8.7648 -3.9858 -1.6835 19 7 9.7053 -2.1478 -0.8711 20 6 10.1391 -2.8133 0.2462 21 1 9.9222 -3.8644 0.3670 22 6 10.8578 -2.1354 1.2232 23 7 11.1213 -0.8564 1.0765 24 14 11.4496 -3.0423 2.7453 25 1 12.3508 -4.1514 2.3417 26 1 12.1871 -2.1017 3.6266 27 1 10.2819 -3.5950 3.4776 28 1 -0.3633 -1.0229 -0.0988 29 1 -0.3633 0.4260 0.9353 30 1 -0.3634 0.5970 -0.8365 31 1 1.7610 -1.7369 -1.6665 32 1 1.7610 -0.1171 -2.4042 33 1 4.1335 0.1816 -1.7466 34 1 4.1327 -1.4384 -1.0089 35 1 6.0196 -1.3363 -2.9303 36 1 5.1721 -3.1993 -4.8765 37 1 5.1735 -1.5793 -5.6139 38 1 6.8664 -4.2483 -6.0008 39 1 7.8849 -3.0618 -6.9357 40 1 9.5675 -2.9650 -5.1525 41 1 8.9527 -4.6248 -4.7500 42 1 9.3874 -1.6679 -3.5840 43 1 7.8688 -1.2594 -2.7502 44 1 9.8998 -1.2037 -0.9794 45 1 11.6228 -0.3831 1.7588 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569363317.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:19:36 Heat of formation + Delta-G solvation = -100.287790 kcal Electronic energy + Delta-G solvation = -28452.197176 eV Core-core repulsion = 24212.779354 eV Total energy + Delta-G solvation = -4239.417823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.58697 -39.48883 -37.78276 -37.21763 -36.26808 -34.65129 -33.91590 -33.42409 -31.40917 -30.72258 -29.99576 -28.65088 -25.86787 -25.23411 -23.79219 -22.87685 -20.59590 -19.71689 -19.31539 -19.12864 -17.92821 -17.78550 -16.64252 -16.57143 -16.36316 -16.14548 -15.94260 -15.64075 -15.55061 -15.03594 -14.58731 -14.26662 -14.19213 -13.81551 -13.75526 -13.56115 -13.52378 -13.34480 -12.80674 -12.74806 -12.47379 -12.31349 -12.22012 -12.06760 -11.71569 -11.61874 -11.58346 -11.37302 -11.34352 -11.06687 -10.95089 -10.89264 -10.61074 -10.43672 -10.21349 -9.95620 -9.49876 -9.12019 -8.88290 -8.24919 -7.97367 -6.42282 -3.83178 -0.33436 2.43133 2.52666 2.97519 3.20782 3.26865 3.31137 3.41282 3.71966 3.84528 3.89405 4.15695 4.21205 4.36392 4.38554 4.44017 4.65316 4.67478 4.69381 4.93195 4.95302 5.12537 5.16782 5.23066 5.27214 5.28358 5.33939 5.38949 5.47264 5.57351 5.60168 5.70819 5.80259 5.90122 6.11644 6.19955 6.31964 6.49040 7.09914 7.39821 7.54813 8.04507 8.10134 8.60406 9.17650 9.52495 10.04546 10.75306 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.007093 B = 0.003276 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3946.584153 B = 8544.340984 C =11900.387189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 2.422 3.578 3 O -0.938 6.938 4 O -0.933 6.933 5 C -0.594 4.594 6 C -0.138 4.138 7 C 0.524 3.476 8 O -0.546 6.546 9 N -0.719 5.719 10 C 0.141 3.859 11 C 0.002 3.998 12 H 0.083 0.917 13 C -0.133 4.133 14 C 0.005 3.995 15 N -0.433 5.433 16 C 0.006 3.994 17 C 0.443 3.557 18 O -0.572 6.572 19 N -0.565 5.565 20 C -0.300 4.300 21 H 0.102 0.898 22 C 0.024 3.976 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.404 0.596 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.062 0.938 43 H 0.080 0.920 44 H 0.391 0.609 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.551 4.727 -11.241 20.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.805 4.805 2 S 2.604 3.396 3 O -0.935 6.935 4 O -0.930 6.930 5 C -0.722 4.722 6 C -0.179 4.179 7 C 0.309 3.691 8 O -0.424 6.424 9 N -0.371 5.371 10 C 0.017 3.983 11 C -0.108 4.108 12 H 0.101 0.899 13 C -0.171 4.171 14 C -0.124 4.124 15 N -0.155 5.155 16 C -0.126 4.126 17 C 0.228 3.772 18 O -0.455 6.455 19 N -0.202 5.202 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.178 4.178 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.198 1.198 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.158 0.842 32 H 0.156 0.844 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.240 0.760 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.224 0.776 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.038 3.701 -10.387 20.295 hybrid contribution 0.793 0.740 0.009 1.085 sum -16.245 4.441 -10.379 19.782 Atomic orbital electron populations 1.30262 1.26854 1.11657 1.11727 1.07844 0.78367 0.75862 0.77561 1.93612 1.78978 1.34468 1.86440 1.93641 1.78806 1.66889 1.53672 1.30131 1.03833 1.15123 1.23143 1.21376 0.93548 1.04778 0.98224 1.20184 0.82688 0.78405 0.87822 1.90673 1.45628 1.51254 1.54876 1.45936 1.07599 1.63272 1.20266 1.21334 0.93535 0.99069 0.84353 1.23797 0.95026 0.97961 0.94010 0.89897 1.23154 0.98760 0.98224 0.96965 1.23752 0.94894 1.02795 0.90964 1.68870 1.17589 1.20497 1.08588 1.22586 0.98120 0.95451 0.96435 1.19591 0.84266 0.88251 0.85078 1.90541 1.60203 1.15737 1.79053 1.41867 1.48100 1.12044 1.18179 1.19637 1.31220 0.96222 0.95867 0.87994 1.25247 0.97319 0.95708 0.99540 1.69596 1.40458 1.08222 1.36036 0.85928 0.78944 0.78762 0.80662 1.19958 1.20959 1.19797 0.85252 0.85239 0.85343 0.84215 0.84365 0.87064 0.86634 0.75983 0.90670 0.91219 0.88552 0.90414 0.91347 0.89137 0.91968 0.90199 0.77592 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.72 10.62 101.05 1.07 -1.64 16 2 S 2.42 19.11 5.36 -107.50 -0.58 18.54 16 3 O -0.94 -10.80 18.10 -57.83 -1.05 -11.84 16 4 O -0.93 -11.61 18.10 -57.83 -1.05 -12.66 16 5 C -0.59 -4.51 5.09 37.16 0.19 -4.32 16 6 C -0.14 -1.41 5.71 -27.88 -0.16 -1.57 16 7 C 0.52 6.67 7.83 -10.99 -0.09 6.58 16 8 O -0.55 -8.24 15.98 5.55 0.09 -8.15 16 9 N -0.72 -8.82 5.46 -60.30 -0.33 -9.15 16 10 C 0.14 1.62 5.81 -4.04 -0.02 1.59 16 11 C 0.00 0.02 3.23 -71.43 -0.23 -0.21 16 12 H 0.08 0.79 7.91 -51.93 -0.41 0.38 16 13 C -0.13 -1.30 8.00 -26.20 -0.21 -1.51 16 14 C 0.00 0.06 7.71 -7.55 -0.06 0.00 16 15 N -0.43 -6.52 5.39 -237.94 -1.28 -7.80 16 16 C 0.01 0.10 5.05 -4.97 -0.03 0.08 16 17 C 0.44 10.14 7.85 -10.98 -0.09 10.05 16 18 O -0.57 -15.42 16.01 5.55 0.09 -15.33 16 19 N -0.56 -13.95 5.29 -10.96 -0.06 -14.01 16 20 C -0.30 -8.29 9.68 -14.94 -0.14 -8.43 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 22 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 23 N -0.90 -24.29 13.05 55.50 0.72 -23.56 16 24 Si 0.93 21.10 29.55 -169.99 -5.02 16.07 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 H 0.13 0.35 8.14 -51.92 -0.42 -0.08 16 29 H 0.13 0.49 8.14 -51.92 -0.42 0.06 16 30 H 0.13 0.30 8.14 -51.92 -0.42 -0.12 16 31 H 0.14 0.93 8.10 -51.92 -0.42 0.51 16 32 H 0.14 0.82 8.10 -51.93 -0.42 0.40 16 33 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.40 4.86 6.22 -40.82 -0.25 4.61 16 36 H 0.07 0.96 7.88 -51.93 -0.41 0.55 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.10 0.95 7.94 -51.93 -0.41 0.54 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.81 7.42 -51.93 -0.39 0.43 16 41 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.06 0.90 7.30 -51.93 -0.38 0.52 16 43 H 0.08 1.12 6.27 -51.93 -0.33 0.79 16 44 H 0.39 9.17 7.90 -40.82 -0.32 8.85 16 45 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 391.32 15.07 5.90 5.90 Total: -1.00 -39.94 391.32 -9.05 -49.00 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -6.63 Total: 11.85 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 0.14 Total: 1.17 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: -0.94 Total: -54.53 kcal Atomic # 8 Polarization: -46.08 SS G_CDS: -1.92 Total: -47.99 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 19.11 SS G_CDS: -0.58 Total: 18.54 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -39.94 -9.05 -49.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569363317.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.292 kcal (2) G-P(sol) polarization free energy of solvation -39.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds