Wall clock time and date at job start Wed Apr 1 2020 05:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46496 * 119.99629 * 2 1 4 4 C 1.53000 * 109.47174 * 269.99649 * 3 2 1 5 5 H 1.08995 * 109.46886 * 305.00404 * 4 3 2 6 6 O 1.42901 * 109.46929 * 65.00471 * 4 3 2 7 7 C 1.52999 * 109.47315 * 185.00277 * 4 3 2 8 8 N 1.46489 * 109.47366 * 179.97438 * 7 4 3 9 9 C 1.36938 * 120.00218 * 179.72127 * 8 7 4 10 10 H 1.07993 * 119.99710 * 0.28812 * 9 8 7 11 11 C 1.38818 * 119.99899 * 180.27394 * 9 8 7 12 12 N 1.31614 * 120.00389 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99673 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47100 * 60.00394 * 13 11 9 15 15 H 1.48501 * 109.46962 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47292 * 300.00374 * 13 11 9 17 17 C 1.34771 * 119.99863 * 179.97438 * 2 1 3 18 18 O 1.21551 * 120.00163 * 175.74539 * 17 2 1 19 19 C 1.47849 * 120.00062 * 355.74925 * 17 2 1 20 20 C 1.40011 * 120.55985 * 40.23451 * 19 17 2 21 21 C 1.38362 * 118.29118 * 180.02562 * 20 19 17 22 22 C 1.38347 * 119.29851 * 0.02562 * 21 20 19 23 23 C 1.50704 * 119.46340 * 179.97438 * 22 21 20 24 24 F 1.39902 * 109.46702 * 89.99638 * 23 22 21 25 25 F 1.39893 * 109.47448 * 210.00303 * 23 22 21 26 26 F 1.39907 * 109.46532 * 330.00538 * 23 22 21 27 27 N 1.31929 * 121.08177 * 0.02562 * 22 21 20 28 28 C 1.31695 * 121.87898 * 359.64678 * 27 22 21 29 29 H 1.08992 * 109.47026 * 94.66157 * 1 2 3 30 30 H 1.09000 * 109.47253 * 214.65972 * 1 2 3 31 31 H 1.08995 * 109.46910 * 334.66141 * 1 2 3 32 32 H 1.09007 * 109.46764 * 149.99683 * 3 2 1 33 33 H 1.08997 * 109.47434 * 30.00052 * 3 2 1 34 34 H 0.96703 * 113.99933 * 60.00163 * 6 4 3 35 35 H 1.09011 * 109.46808 * 59.99882 * 7 4 3 36 36 H 1.09003 * 109.47040 * 300.00543 * 7 4 3 37 37 H 0.97003 * 119.99939 * 0.02562 * 8 7 4 38 38 H 0.96999 * 119.99954 * 179.97438 * 12 11 9 39 39 H 1.08009 * 120.85845 * 0.02562 * 20 19 17 40 40 H 1.07997 * 120.34745 * 179.97438 * 21 20 19 41 41 H 1.08000 * 119.71680 * 180.31413 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 2.9642 0.9131 -1.9814 6 8 1.2060 1.9935 -2.0814 7 6 3.3238 2.9681 -1.4444 8 7 3.5685 3.3906 -2.8255 9 6 4.3244 4.5044 -3.0771 10 1 4.7440 5.0686 -2.2574 11 6 4.5515 4.9080 -4.3857 12 7 4.0400 4.2205 -5.3847 13 14 5.5832 6.4270 -4.7289 14 1 6.9460 6.2362 -4.1707 15 1 5.6742 6.6426 -6.1953 16 1 4.9492 7.6100 -4.0934 17 6 2.1389 -1.1672 0.0005 18 8 3.3519 -1.1687 -0.0776 19 6 1.4027 -2.4458 0.0960 20 6 0.2022 -2.6297 -0.6007 21 6 -0.4480 -3.8448 -0.4773 22 6 0.1031 -4.8293 0.3233 23 6 -0.6024 -6.1539 0.4609 24 9 -0.1486 -7.0292 -0.5317 25 9 -0.3321 -6.6976 1.7212 26 9 -1.9814 -5.9645 0.3206 27 7 1.2356 -4.6273 0.9691 28 6 1.8947 -3.4908 0.8786 29 1 -0.3633 -0.0835 -1.0242 30 1 -0.3634 -0.8453 0.5844 31 1 -0.3633 0.9288 0.4398 32 1 3.1499 1.1384 0.5139 33 1 1.6084 2.0284 0.5138 34 1 0.6955 2.6950 -1.6542 35 1 4.2746 2.7521 -0.9569 36 1 2.8121 3.7654 -0.9053 37 1 3.1914 2.8839 -3.5617 38 1 4.1984 4.5028 -6.2990 39 1 -0.2058 -1.8434 -1.2187 40 1 -1.3764 -4.0223 -0.9997 41 1 2.8215 -3.3649 1.4186 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571585812.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:55 Heat of formation + Delta-G solvation = -168.425900 kcal Electronic energy + Delta-G solvation = -29872.848853 eV Core-core repulsion = 24953.175649 eV Total energy + Delta-G solvation = -4919.673204 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.60866 -48.15582 -48.04076 -41.39421 -39.73082 -37.57876 -35.64288 -34.06339 -33.51926 -32.76473 -31.37161 -29.64750 -27.81741 -26.99747 -25.61821 -24.37291 -23.49565 -22.71534 -21.29938 -20.24584 -19.27064 -18.99067 -18.93060 -17.81360 -17.20049 -17.14778 -16.58264 -16.27364 -15.73057 -15.57143 -15.12454 -14.98951 -14.87885 -14.55343 -14.51213 -14.46530 -14.41793 -14.20273 -14.19435 -14.08842 -13.75909 -13.51597 -13.15459 -13.00921 -12.73514 -12.51513 -12.51095 -12.11695 -11.65379 -10.97110 -10.83526 -10.78937 -10.69519 -10.57504 -10.26998 -10.18384 -9.98505 -9.86938 -9.72376 -8.90921 -8.74740 -6.94128 -5.76186 -3.05948 -0.20954 0.46347 1.92453 2.21489 2.54497 2.93312 3.03574 3.36465 3.43275 3.47446 3.48888 3.87521 3.90383 4.02337 4.12952 4.28534 4.35046 4.52524 4.67025 4.69442 4.89817 4.90941 5.01499 5.12265 5.14286 5.26481 5.39672 5.52225 5.57735 5.62555 5.71172 5.90812 6.12857 6.26876 6.49386 6.67596 6.90243 7.00618 7.66718 7.73873 7.93852 8.41917 9.53318 10.10751 10.46350 11.46085 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.026649 B = 0.001855 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.441279 B =15091.871691 C =15195.038432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.597 5.597 3 C 0.087 3.913 4 C 0.086 3.914 5 H 0.102 0.898 6 O -0.551 6.551 7 C 0.127 3.873 8 N -0.725 5.725 9 C -0.244 4.244 10 H 0.069 0.931 11 C -0.013 4.013 12 N -0.930 5.930 13 Si 0.909 3.091 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.557 3.443 18 O -0.516 6.516 19 C -0.144 4.144 20 C -0.045 4.045 21 C -0.127 4.127 22 C 0.051 3.949 23 C 0.523 3.477 24 F -0.168 7.168 25 F -0.163 7.163 26 F -0.170 7.170 27 N -0.445 5.445 28 C 0.159 3.841 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.367 0.633 35 H 0.028 0.972 36 H 0.020 0.980 37 H 0.389 0.611 38 H 0.256 0.744 39 H 0.164 0.836 40 H 0.157 0.843 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.229 -18.375 15.731 28.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.328 5.328 3 C -0.036 4.036 4 C 0.025 3.975 5 H 0.120 0.880 6 O -0.355 6.355 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.375 4.375 10 H 0.087 0.913 11 C -0.209 4.209 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.213 1.213 17 C 0.343 3.657 18 O -0.391 6.391 19 C -0.149 4.149 20 C -0.071 4.071 21 C -0.147 4.147 22 C -0.088 4.088 23 C 0.468 3.532 24 F -0.149 7.149 25 F -0.144 7.144 26 F -0.151 7.151 27 N -0.152 5.152 28 C 0.000 4.000 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.214 0.786 35 H 0.045 0.955 36 H 0.037 0.963 37 H 0.223 0.777 38 H 0.066 0.934 39 H 0.181 0.819 40 H 0.175 0.825 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -13.965 -19.408 15.830 28.676 hybrid contribution -0.202 1.607 -0.639 1.741 sum -14.167 -17.801 15.192 27.357 Atomic orbital electron populations 1.22173 0.79225 1.03362 1.02316 1.47614 1.07249 1.05700 1.72283 1.22376 0.98445 0.83791 0.98981 1.22553 0.85268 0.98359 0.91303 0.88039 1.86612 1.32293 1.59038 1.57528 1.21207 0.96358 0.92798 0.89846 1.42222 1.61995 1.32045 1.00724 1.19170 1.24052 1.02506 0.91816 0.91299 1.24768 1.01146 0.99387 0.95585 1.69668 1.49069 1.40773 0.98293 0.86253 0.80152 0.82753 0.76910 1.21226 1.21650 1.21276 1.17983 0.87068 0.83076 0.77544 1.90880 1.12988 1.86727 1.48545 1.21266 0.96420 0.96894 1.00319 1.22212 0.92076 0.97307 0.95522 1.21849 1.01783 0.92871 0.98201 1.21158 0.95024 0.94116 0.98552 1.17834 0.76560 0.84141 0.74676 1.93261 1.88812 1.71107 1.61765 1.93246 1.93476 1.87099 1.40561 1.93223 1.31151 1.95219 1.95548 1.67282 1.05644 1.23235 1.19083 1.22962 0.97847 0.85490 0.93728 0.91185 0.91356 0.90291 0.88546 0.89641 0.78637 0.95477 0.96274 0.77668 0.93421 0.81915 0.82524 0.80278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 8.56 59.85 0.51 0.96 16 2 N -0.60 -5.95 2.84 -182.69 -0.52 -6.47 16 3 C 0.09 0.98 5.07 -4.04 -0.02 0.96 16 4 C 0.09 1.32 3.30 -26.73 -0.09 1.23 16 5 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 6 O -0.55 -8.26 12.64 -35.23 -0.45 -8.70 16 7 C 0.13 2.43 5.92 -4.05 -0.02 2.41 16 8 N -0.72 -18.51 5.49 -59.91 -0.33 -18.84 16 9 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 10 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 11 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 12 N -0.93 -28.57 13.06 55.49 0.72 -27.85 16 13 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 C 0.56 6.56 7.36 -12.33 -0.09 6.47 16 18 O -0.52 -8.10 16.56 5.32 0.09 -8.01 16 19 C -0.14 -1.33 5.19 -104.82 -0.54 -1.88 16 20 C -0.05 -0.32 7.73 -38.87 -0.30 -0.62 16 21 C -0.13 -0.83 9.42 -39.50 -0.37 -1.21 16 22 C 0.05 0.44 6.30 -82.51 -0.52 -0.08 16 23 C 0.52 4.45 3.43 36.01 0.12 4.58 16 24 F -0.17 -1.55 17.30 2.25 0.04 -1.51 16 25 F -0.16 -1.57 17.03 2.25 0.04 -1.53 16 26 F -0.17 -1.26 16.43 2.25 0.04 -1.22 16 27 N -0.44 -4.48 9.94 -9.14 -0.09 -4.57 16 28 C 0.16 1.49 10.82 -17.13 -0.19 1.31 16 29 H 0.07 0.43 6.89 -51.93 -0.36 0.07 16 30 H 0.07 0.33 5.92 -51.93 -0.31 0.02 16 31 H 0.08 0.38 7.84 -51.93 -0.41 -0.02 16 32 H 0.10 1.18 7.48 -51.92 -0.39 0.79 16 33 H 0.09 0.73 7.86 -51.93 -0.41 0.32 16 34 H 0.37 4.25 9.05 45.56 0.41 4.66 16 35 H 0.03 0.54 8.14 -51.92 -0.42 0.11 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.39 10.73 7.54 -40.82 -0.31 10.43 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.16 0.85 5.53 -52.48 -0.29 0.56 16 40 H 0.16 0.62 7.59 -52.49 -0.40 0.22 16 41 H 0.18 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 365.06 15.07 5.50 5.50 Total: -1.00 -35.28 365.06 -5.42 -40.70 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -3.69 Total: 8.40 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -1.76 Total: 6.64 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.21 Total: -57.73 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.36 Total: -16.71 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.11 Total: -4.27 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.28 -5.42 -40.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571585812.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.722 kcal (2) G-P(sol) polarization free energy of solvation -35.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds