Wall clock time and date at job start Wed Apr 1 2020 05:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46496 * 119.99629 * 2 1 4 4 C 1.53000 * 109.47174 * 269.99649 * 3 2 1 5 5 H 1.08995 * 109.46886 * 305.00404 * 4 3 2 6 6 O 1.42901 * 109.46929 * 65.00471 * 4 3 2 7 7 C 1.52999 * 109.47315 * 185.00277 * 4 3 2 8 8 N 1.46489 * 109.47366 * 179.97438 * 7 4 3 9 9 C 1.36938 * 120.00218 * 179.72127 * 8 7 4 10 10 H 1.07993 * 119.99710 * 0.28812 * 9 8 7 11 11 C 1.38818 * 119.99899 * 180.27394 * 9 8 7 12 12 N 1.31614 * 120.00389 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99673 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47100 * 60.00394 * 13 11 9 15 15 H 1.48501 * 109.46962 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47292 * 300.00374 * 13 11 9 17 17 C 1.34771 * 119.99863 * 179.97438 * 2 1 3 18 18 O 1.21551 * 120.00163 * 175.74539 * 17 2 1 19 19 C 1.47849 * 120.00062 * 355.74925 * 17 2 1 20 20 C 1.40011 * 120.55985 * 40.23451 * 19 17 2 21 21 C 1.38362 * 118.29118 * 180.02562 * 20 19 17 22 22 C 1.38347 * 119.29851 * 0.02562 * 21 20 19 23 23 C 1.50704 * 119.46340 * 179.97438 * 22 21 20 24 24 F 1.39902 * 109.46702 * 89.99638 * 23 22 21 25 25 F 1.39893 * 109.47448 * 210.00303 * 23 22 21 26 26 F 1.39907 * 109.46532 * 330.00538 * 23 22 21 27 27 N 1.31929 * 121.08177 * 0.02562 * 22 21 20 28 28 C 1.31695 * 121.87898 * 359.64678 * 27 22 21 29 29 H 1.08992 * 109.47026 * 94.66157 * 1 2 3 30 30 H 1.09000 * 109.47253 * 214.65972 * 1 2 3 31 31 H 1.08995 * 109.46910 * 334.66141 * 1 2 3 32 32 H 1.09007 * 109.46764 * 149.99683 * 3 2 1 33 33 H 1.08997 * 109.47434 * 30.00052 * 3 2 1 34 34 H 0.96703 * 113.99933 * 60.00163 * 6 4 3 35 35 H 1.09011 * 109.46808 * 59.99882 * 7 4 3 36 36 H 1.09003 * 109.47040 * 300.00543 * 7 4 3 37 37 H 0.97003 * 119.99939 * 0.02562 * 8 7 4 38 38 H 0.96999 * 119.99954 * 179.97438 * 12 11 9 39 39 H 1.08009 * 120.85845 * 0.02562 * 20 19 17 40 40 H 1.07997 * 120.34745 * 179.97438 * 21 20 19 41 41 H 1.08000 * 119.71680 * 180.31413 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 2.9642 0.9131 -1.9814 6 8 1.2060 1.9935 -2.0814 7 6 3.3238 2.9681 -1.4444 8 7 3.5685 3.3906 -2.8255 9 6 4.3244 4.5044 -3.0771 10 1 4.7440 5.0686 -2.2574 11 6 4.5515 4.9080 -4.3857 12 7 4.0400 4.2205 -5.3847 13 14 5.5832 6.4270 -4.7289 14 1 6.9460 6.2362 -4.1707 15 1 5.6742 6.6426 -6.1953 16 1 4.9492 7.6100 -4.0934 17 6 2.1389 -1.1672 0.0005 18 8 3.3519 -1.1687 -0.0776 19 6 1.4027 -2.4458 0.0960 20 6 0.2022 -2.6297 -0.6007 21 6 -0.4480 -3.8448 -0.4773 22 6 0.1031 -4.8293 0.3233 23 6 -0.6024 -6.1539 0.4609 24 9 -0.1486 -7.0292 -0.5317 25 9 -0.3321 -6.6976 1.7212 26 9 -1.9814 -5.9645 0.3206 27 7 1.2356 -4.6273 0.9691 28 6 1.8947 -3.4908 0.8786 29 1 -0.3633 -0.0835 -1.0242 30 1 -0.3634 -0.8453 0.5844 31 1 -0.3633 0.9288 0.4398 32 1 3.1499 1.1384 0.5139 33 1 1.6084 2.0284 0.5138 34 1 0.6955 2.6950 -1.6542 35 1 4.2746 2.7521 -0.9569 36 1 2.8121 3.7654 -0.9053 37 1 3.1914 2.8839 -3.5617 38 1 4.1984 4.5028 -6.2990 39 1 -0.2058 -1.8434 -1.2187 40 1 -1.3764 -4.0223 -0.9997 41 1 2.8215 -3.3649 1.4186 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571585812.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:54 Heat of formation + Delta-G solvation = -195.651183 kcal Electronic energy + Delta-G solvation = -29874.029430 eV Core-core repulsion = 24953.175649 eV Total energy + Delta-G solvation = -4920.853781 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -51.27933 -48.80159 -48.74870 -42.11973 -40.57731 -38.80632 -36.64037 -35.85619 -34.24131 -33.42058 -33.18158 -30.96245 -28.52218 -28.01722 -26.79955 -25.32403 -24.53693 -23.89776 -22.71564 -21.07641 -19.91905 -19.65743 -19.60928 -19.24298 -18.59637 -18.01987 -17.46848 -17.23705 -16.77498 -16.43930 -16.38592 -16.00365 -15.78217 -15.58022 -15.45803 -15.28847 -15.17392 -15.00101 -14.92453 -14.89272 -14.83400 -14.69796 -14.33235 -14.15640 -13.75470 -13.68054 -13.24760 -13.12922 -12.99301 -12.72586 -12.58228 -12.21704 -12.04551 -11.82063 -11.54296 -11.23488 -11.18513 -10.97272 -10.84545 -10.67026 -9.67791 -9.01734 -7.95067 -5.24943 -0.88088 -0.13401 1.26152 1.38671 1.46557 1.50273 1.56366 1.75543 2.23255 2.37128 2.55449 2.73064 3.17556 3.23744 3.36267 3.42038 3.49313 3.52095 3.68654 3.73520 3.76718 4.01209 4.17187 4.26498 4.36159 4.45799 4.51817 4.56654 4.63650 4.71084 4.73945 4.92694 4.95285 5.09010 5.21224 5.38366 5.46999 6.13948 6.25698 6.31441 6.87751 6.92571 7.32266 8.08921 8.31145 9.28150 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.026649 B = 0.001855 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.441279 B =15091.871691 C =15195.038432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.592 5.592 3 C 0.097 3.903 4 C 0.104 3.896 5 H 0.064 0.936 6 O -0.560 6.560 7 C 0.122 3.878 8 N -0.742 5.742 9 C -0.249 4.249 10 H 0.078 0.922 11 C -0.078 4.078 12 N -0.970 5.970 13 Si 0.977 3.023 14 H -0.279 1.279 15 H -0.296 1.296 16 H -0.273 1.273 17 C 0.554 3.446 18 O -0.567 6.567 19 C -0.152 4.152 20 C -0.033 4.033 21 C -0.113 4.113 22 C 0.039 3.961 23 C 0.526 3.474 24 F -0.174 7.174 25 F -0.172 7.172 26 F -0.161 7.161 27 N -0.467 5.467 28 C 0.152 3.848 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.124 0.876 34 H 0.385 0.615 35 H 0.022 0.978 36 H 0.043 0.957 37 H 0.374 0.626 38 H 0.251 0.749 39 H 0.186 0.814 40 H 0.189 0.811 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.217 -17.616 16.714 29.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.322 5.322 3 C -0.027 4.027 4 C 0.043 3.957 5 H 0.082 0.918 6 O -0.366 6.366 7 C -0.005 4.005 8 N -0.384 5.384 9 C -0.380 4.380 10 H 0.096 0.904 11 C -0.271 4.271 12 N -0.621 5.621 13 Si 0.805 3.195 14 H -0.205 1.205 15 H -0.222 1.222 16 H -0.199 1.199 17 C 0.341 3.659 18 O -0.447 6.447 19 C -0.157 4.157 20 C -0.059 4.059 21 C -0.133 4.133 22 C -0.099 4.099 23 C 0.471 3.529 24 F -0.155 7.155 25 F -0.153 7.153 26 F -0.142 7.142 27 N -0.175 5.175 28 C -0.007 4.007 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.142 0.858 34 H 0.234 0.766 35 H 0.040 0.960 36 H 0.060 0.940 37 H 0.206 0.794 38 H 0.060 0.940 39 H 0.203 0.797 40 H 0.207 0.793 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -16.005 -18.639 16.882 29.809 hybrid contribution 0.336 1.324 -0.889 1.630 sum -15.669 -17.315 15.992 28.303 Atomic orbital electron populations 1.22484 0.76518 1.05468 1.03348 1.47694 1.08856 1.04629 1.70989 1.22190 0.99196 0.85360 0.95917 1.22170 0.84693 0.95347 0.93472 0.91779 1.86579 1.31861 1.59900 1.58300 1.21446 0.97162 0.95142 0.86766 1.42447 1.61748 1.31402 1.02846 1.19635 1.23363 1.02885 0.92141 0.90402 1.25645 1.03089 1.02761 0.95570 1.69840 1.51118 1.42745 0.98351 0.85166 0.78656 0.79405 0.76243 1.20535 1.22249 1.19913 1.18378 0.86624 0.84249 0.76642 1.90852 1.15258 1.87529 1.51047 1.21086 0.97381 0.95691 1.01517 1.22451 0.90857 0.97980 0.94591 1.22160 1.02412 0.91719 0.96977 1.21355 0.94924 0.94638 0.99026 1.17815 0.76912 0.83984 0.74175 1.93251 1.88959 1.71356 1.61939 1.93226 1.93604 1.87268 1.41215 1.93239 1.30371 1.95141 1.95462 1.67241 1.06572 1.23561 1.20135 1.22973 0.98016 0.85563 0.94173 0.90521 0.89599 0.88068 0.89800 0.85759 0.76599 0.95975 0.93959 0.79389 0.94026 0.79716 0.79333 0.80337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.56 8.56 127.77 1.09 1.65 16 2 N -0.59 -10.71 2.84 -850.20 -2.41 -13.12 16 3 C 0.10 2.01 5.07 86.38 0.44 2.45 16 4 C 0.10 3.13 3.30 30.59 0.10 3.23 16 5 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 6 O -0.56 -15.83 12.64 -148.98 -1.88 -17.71 16 7 C 0.12 4.61 5.92 86.38 0.51 5.12 16 8 N -0.74 -38.08 5.49 -343.46 -1.89 -39.97 16 9 C -0.25 -13.97 9.99 84.03 0.84 -13.13 16 10 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 11 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 12 N -0.97 -60.63 13.06 21.65 0.28 -60.35 16 13 Si 0.98 46.33 29.55 68.60 2.03 48.35 16 14 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 15 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 16 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 17 C 0.55 12.83 7.36 86.79 0.64 13.47 16 18 O -0.57 -18.50 16.56 -3.88 -0.06 -18.57 16 19 C -0.15 -2.67 5.19 -19.99 -0.10 -2.77 16 20 C -0.03 -0.38 7.73 22.73 0.18 -0.20 16 21 C -0.11 -1.17 9.42 22.33 0.21 -0.96 16 22 C 0.04 0.63 6.30 42.57 0.27 0.90 16 23 C 0.53 8.30 3.43 71.24 0.24 8.54 16 24 F -0.17 -3.04 17.30 44.97 0.78 -2.27 16 25 F -0.17 -3.22 17.03 44.97 0.77 -2.46 16 26 F -0.16 -2.05 16.43 44.97 0.74 -1.31 16 27 N -0.47 -9.23 9.94 -182.82 -1.82 -11.04 16 28 C 0.15 2.86 10.82 85.02 0.92 3.78 16 29 H 0.08 0.64 6.89 -2.39 -0.02 0.62 16 30 H 0.09 0.50 5.92 -2.39 -0.01 0.49 16 31 H 0.10 0.51 7.84 -2.39 -0.02 0.49 16 32 H 0.08 2.01 7.48 -2.38 -0.02 1.99 16 33 H 0.12 1.64 7.86 -2.39 -0.02 1.62 16 34 H 0.39 7.77 9.05 -74.05 -0.67 7.10 16 35 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.37 21.10 7.54 -92.71 -0.70 20.40 16 38 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 39 H 0.19 1.27 5.53 -2.91 -0.02 1.25 16 40 H 0.19 0.71 7.59 -2.91 -0.02 0.69 16 41 H 0.18 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -78.67 365.06 2.08 -76.58 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: -0.25 Total: 23.88 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: 5.80 Total: 17.97 kcal Atomic # 7 Polarization: -118.65 SS G_CDS: -5.83 Total: -124.48 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: -1.95 Total: -36.28 kcal Atomic # 9 Polarization: -8.32 SS G_CDS: 2.28 Total: -6.03 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -78.67 2.08 -76.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571585812.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.070 kcal (2) G-P(sol) polarization free energy of solvation -78.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds