Wall clock time and date at job start Wed Apr 1 2020 05:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 119.99907 * 2 1 4 4 C 1.53008 * 109.47122 * 269.72391 * 3 2 1 5 5 H 1.09001 * 109.47159 * 59.99958 * 4 3 2 6 6 O 1.42899 * 109.47068 * 300.00191 * 4 3 2 7 7 C 1.53002 * 109.46938 * 180.02562 * 4 3 2 8 8 N 1.46507 * 109.46687 * 184.99886 * 7 4 3 9 9 C 1.36938 * 119.99874 * 179.97438 * 8 7 4 10 10 H 1.07997 * 119.99619 * 0.02562 * 9 8 7 11 11 C 1.38805 * 119.99883 * 179.97438 * 9 8 7 12 12 N 1.31617 * 120.00185 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 119.99911 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.46947 * 59.99940 * 13 11 9 15 15 H 1.48494 * 109.46980 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46737 * 300.00229 * 13 11 9 17 17 C 1.34776 * 119.99906 * 179.72688 * 2 1 3 18 18 O 1.21547 * 120.00176 * 176.14334 * 17 2 1 19 19 C 1.47838 * 119.99870 * 356.13788 * 17 2 1 20 20 C 1.40028 * 120.55940 * 40.01769 * 19 17 2 21 21 C 1.38355 * 118.29099 * 179.97438 * 20 19 17 22 22 C 1.38357 * 119.30273 * 0.02562 * 21 20 19 23 23 C 1.50693 * 119.46282 * 179.97438 * 22 21 20 24 24 F 1.39904 * 109.46998 * 90.00171 * 23 22 21 25 25 F 1.39895 * 109.47506 * 210.00237 * 23 22 21 26 26 F 1.39901 * 109.47507 * 330.00441 * 23 22 21 27 27 N 1.31927 * 121.07833 * 0.02562 * 22 21 20 28 28 C 1.31694 * 121.87812 * 359.65455 * 27 22 21 29 29 H 1.08997 * 109.47052 * 94.64314 * 1 2 3 30 30 H 1.08990 * 109.47414 * 214.64576 * 1 2 3 31 31 H 1.09001 * 109.47105 * 334.64855 * 1 2 3 32 32 H 1.08999 * 109.47611 * 29.72211 * 3 2 1 33 33 H 1.08998 * 109.47220 * 149.72841 * 3 2 1 34 34 H 0.96706 * 114.00259 * 300.00160 * 6 4 3 35 35 H 1.08995 * 109.46797 * 304.99217 * 7 4 3 36 36 H 1.08992 * 109.47015 * 65.00088 * 7 4 3 37 37 H 0.96994 * 119.99975 * 359.97438 * 8 7 4 38 38 H 0.97003 * 119.99751 * 179.97438 * 12 11 9 39 39 H 1.07997 * 120.85237 * 0.02829 * 20 19 17 40 40 H 1.07996 * 120.35108 * 179.97438 * 21 20 19 41 41 H 1.08006 * 119.71978 * 180.30909 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4585 1.7069 -1.4426 5 1 1.5083 1.8360 -1.9607 6 8 3.2336 0.7094 -2.1106 7 6 3.2241 3.0317 -1.4425 8 7 3.3698 3.5115 -2.8191 9 6 4.0251 4.6877 -3.0684 10 1 4.4348 5.2614 -2.2503 11 6 4.1635 5.1420 -4.3727 12 7 3.6646 4.4425 -5.3697 13 14 5.0581 6.7463 -4.7130 14 1 6.4543 6.6493 -4.2166 15 1 5.0688 7.0066 -6.1749 16 1 4.3617 7.8584 -4.0176 17 6 2.1389 -1.1672 0.0056 18 8 3.3523 -1.1688 -0.0652 19 6 1.4022 -2.4456 0.0979 20 6 0.2034 -2.6286 -0.6022 21 6 -0.4469 -3.8439 -0.4825 22 6 0.1023 -4.8299 0.3178 23 6 -0.6032 -6.1547 0.4513 24 9 -0.1468 -7.0283 -0.5416 25 9 -0.3361 -6.7006 1.7113 26 9 -1.9820 -5.9654 0.3079 27 7 1.2332 -4.6288 0.9668 28 6 1.8922 -3.4919 0.8800 29 1 -0.3633 -0.0832 -1.0243 30 1 -0.3634 -0.8454 0.5842 31 1 -0.3633 0.9287 0.4400 32 1 1.6063 2.0296 0.5095 33 1 3.1478 1.1396 0.5180 34 1 4.0944 0.5418 -1.7030 35 1 2.6746 3.7688 -0.8571 36 1 4.2105 2.8812 -1.0039 37 1 3.0021 2.9959 -3.5538 38 1 3.7611 4.7602 -6.2812 39 1 -0.2027 -1.8417 -1.2204 40 1 -1.3740 -4.0208 -1.0075 41 1 2.8177 -3.3667 1.4225 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571585813.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:59 Heat of formation + Delta-G solvation = -168.614076 kcal Electronic energy + Delta-G solvation = -29958.935483 eV Core-core repulsion = 25039.254118 eV Total energy + Delta-G solvation = -4919.681364 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.60481 -48.15198 -48.03572 -41.37361 -39.70926 -37.36109 -35.68912 -34.04905 -33.47605 -32.74546 -31.32231 -29.57672 -27.80201 -27.10671 -25.56511 -24.36117 -23.50626 -22.65313 -21.25485 -20.21151 -19.26426 -18.98673 -18.92676 -17.80660 -17.19027 -17.14469 -16.58485 -16.22196 -15.71137 -15.44387 -15.18039 -14.92756 -14.86916 -14.51791 -14.49129 -14.45173 -14.38718 -14.20000 -14.19592 -14.09635 -13.68008 -13.53253 -13.17946 -12.97539 -12.73532 -12.53173 -12.36870 -12.21884 -11.60068 -10.96967 -10.82298 -10.79469 -10.64757 -10.55137 -10.21486 -10.17275 -9.95220 -9.80552 -9.68149 -8.91227 -8.72446 -6.94506 -5.76715 -3.06425 -0.19370 0.47276 1.93236 2.26619 2.57219 2.95388 3.04202 3.37058 3.42903 3.47128 3.48558 3.88950 3.91226 4.03034 4.13603 4.29350 4.35736 4.54395 4.66184 4.79623 4.87427 4.92282 5.05334 5.10526 5.20132 5.26493 5.33831 5.48384 5.57752 5.63542 5.71689 5.91860 6.12298 6.27462 6.47865 6.68354 6.92241 7.02989 7.66507 7.79489 8.14266 8.41502 9.52769 10.10192 10.45605 11.45579 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.028778 B = 0.001857 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.716748 B =15075.692014 C =15273.646326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.599 5.599 3 C 0.085 3.915 4 C 0.086 3.914 5 H 0.096 0.904 6 O -0.548 6.548 7 C 0.126 3.874 8 N -0.725 5.725 9 C -0.244 4.244 10 H 0.069 0.931 11 C -0.013 4.013 12 N -0.930 5.930 13 Si 0.908 3.092 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.565 3.435 18 O -0.513 6.513 19 C -0.142 4.142 20 C -0.046 4.046 21 C -0.127 4.127 22 C 0.050 3.950 23 C 0.523 3.477 24 F -0.168 7.168 25 F -0.163 7.163 26 F -0.170 7.170 27 N -0.445 5.445 28 C 0.158 3.842 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.375 0.625 35 H 0.025 0.975 36 H 0.022 0.978 37 H 0.388 0.612 38 H 0.256 0.744 39 H 0.162 0.838 40 H 0.157 0.843 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.502 -19.401 15.696 28.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.331 5.331 3 C -0.038 4.038 4 C 0.025 3.975 5 H 0.114 0.886 6 O -0.353 6.353 7 C -0.003 4.003 8 N -0.370 5.370 9 C -0.375 4.375 10 H 0.087 0.913 11 C -0.209 4.209 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.212 1.212 15 H -0.217 1.217 16 H -0.213 1.213 17 C 0.351 3.649 18 O -0.388 6.388 19 C -0.147 4.147 20 C -0.072 4.072 21 C -0.147 4.147 22 C -0.089 4.089 23 C 0.468 3.532 24 F -0.150 7.150 25 F -0.144 7.144 26 F -0.152 7.152 27 N -0.152 5.152 28 C -0.001 4.001 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.223 0.777 35 H 0.042 0.958 36 H 0.039 0.961 37 H 0.222 0.778 38 H 0.066 0.934 39 H 0.179 0.821 40 H 0.174 0.826 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -12.975 -19.964 15.809 28.581 hybrid contribution 0.261 1.299 -0.667 1.483 sum -12.715 -18.665 15.142 27.191 Atomic orbital electron populations 1.22191 0.79548 1.03760 1.02059 1.47576 1.06932 1.05881 1.72712 1.22401 0.98304 0.83881 0.99209 1.22493 0.95804 0.88454 0.90748 0.88583 1.86542 1.33287 1.58661 1.56837 1.21235 0.96802 0.92403 0.89833 1.42234 1.68143 1.25319 1.01295 1.19169 1.28362 0.97865 0.92122 0.91301 1.24765 1.01460 0.99055 0.95614 1.69669 1.50295 1.39259 0.98615 0.86254 0.79574 0.83335 0.76909 1.21233 1.21651 1.21271 1.17834 0.87025 0.82845 0.77154 1.90808 1.13019 1.86601 1.48406 1.21291 0.96332 0.96995 1.00103 1.22189 0.92149 0.97285 0.95534 1.21846 1.01768 0.92882 0.98218 1.21145 0.95072 0.94095 0.98600 1.17834 0.76556 0.84158 0.74662 1.93262 1.88727 1.71214 1.61751 1.93246 1.93538 1.87022 1.40590 1.93221 1.31194 1.95223 1.95518 1.67274 1.05625 1.23301 1.19048 1.22955 0.97827 0.85504 0.93827 0.91722 0.91039 0.90054 0.89147 0.89204 0.77682 0.95783 0.96068 0.77758 0.93424 0.82062 0.82569 0.80309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 8.96 59.85 0.54 0.95 16 2 N -0.60 -5.92 2.83 -182.70 -0.52 -6.44 16 3 C 0.08 0.95 5.18 -4.04 -0.02 0.93 16 4 C 0.09 1.32 3.27 -26.73 -0.09 1.23 16 5 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 6 O -0.55 -9.75 12.00 -48.25 -0.58 -10.33 16 7 C 0.13 2.41 5.90 -4.04 -0.02 2.39 16 8 N -0.73 -18.44 5.55 -59.91 -0.33 -18.77 16 9 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 10 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 11 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 12 N -0.93 -28.49 13.06 55.49 0.72 -27.77 16 13 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 C 0.57 6.49 6.93 -12.33 -0.09 6.41 16 18 O -0.51 -7.57 15.07 -7.69 -0.12 -7.68 16 19 C -0.14 -1.31 5.19 -104.82 -0.54 -1.85 16 20 C -0.05 -0.32 7.73 -38.87 -0.30 -0.62 16 21 C -0.13 -0.84 9.42 -39.49 -0.37 -1.21 16 22 C 0.05 0.44 6.30 -82.51 -0.52 -0.08 16 23 C 0.52 4.47 3.43 36.00 0.12 4.59 16 24 F -0.17 -1.56 17.30 2.25 0.04 -1.52 16 25 F -0.16 -1.58 17.03 2.25 0.04 -1.54 16 26 F -0.17 -1.27 16.43 2.25 0.04 -1.23 16 27 N -0.44 -4.47 9.94 -9.14 -0.09 -4.56 16 28 C 0.16 1.47 10.81 -17.13 -0.19 1.29 16 29 H 0.06 0.36 6.89 -51.93 -0.36 0.00 16 30 H 0.07 0.34 5.92 -51.93 -0.31 0.03 16 31 H 0.08 0.40 7.84 -51.93 -0.41 -0.01 16 32 H 0.09 0.80 7.86 -51.93 -0.41 0.40 16 33 H 0.09 1.07 7.48 -51.93 -0.39 0.68 16 34 H 0.38 6.32 8.33 45.56 0.38 6.70 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.39 10.65 7.67 -40.82 -0.31 10.34 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.16 0.84 5.52 -52.49 -0.29 0.55 16 40 H 0.16 0.62 7.59 -52.49 -0.40 0.23 16 41 H 0.18 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 362.40 15.07 5.46 5.46 Total: -1.00 -34.73 362.40 -5.81 -40.54 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -3.73 Total: 9.88 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -1.73 Total: 6.55 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: -0.22 Total: -57.55 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.70 Total: -18.01 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.11 Total: -4.29 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.73 -5.81 -40.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571585813.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.072 kcal (2) G-P(sol) polarization free energy of solvation -34.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds