Wall clock time and date at job start Wed Apr 1 2020 06:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34234 * 117.00020 * 2 1 4 4 O 1.20822 * 119.99806 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99906 * 180.02562 * 3 2 1 6 6 C 1.53010 * 109.46904 * 179.97438 * 5 3 2 7 7 N 1.46505 * 109.46890 * 179.97438 * 6 5 3 8 8 C 1.36932 * 120.00081 * 264.13446 * 7 6 5 9 9 H 1.08000 * 120.00395 * 187.80446 * 8 7 6 10 10 C 1.38816 * 120.00182 * 7.80715 * 8 7 6 11 11 N 1.31626 * 119.99838 * 25.88266 * 10 8 7 12 12 Si 1.86803 * 120.00121 * 205.89021 * 10 8 7 13 13 H 1.48500 * 109.47106 * 84.98204 * 12 10 8 14 14 H 1.48495 * 109.46788 * 204.98473 * 12 10 8 15 15 H 1.48502 * 109.46833 * 324.98210 * 12 10 8 16 16 C 1.46504 * 119.99710 * 84.13997 * 7 6 5 17 17 C 1.50696 * 109.46989 * 269.99587 * 16 7 6 18 18 N 1.30383 * 126.18576 * 89.97538 * 17 16 7 19 19 N 1.28668 * 109.52202 * 179.97438 * 18 17 16 20 20 C 1.31231 * 109.24933 * 0.02562 * 19 18 17 21 21 C 1.47859 * 126.37456 * 179.97438 * 20 19 18 22 22 C 1.39601 * 120.11239 * 180.02562 * 21 20 19 23 23 C 1.37969 * 119.96744 * 179.97438 * 22 21 20 24 24 C 1.38285 * 120.19968 * 359.97237 * 23 22 21 25 25 C 1.38810 * 120.23690 * 359.79731 * 24 23 22 26 26 O 1.35910 * 119.98558 * 180.25155 * 25 24 23 27 27 C 1.38493 * 120.02810 * 0.46014 * 25 24 23 28 28 O 1.34415 * 126.18737 * 270.28621 * 17 16 7 29 29 H 1.09004 * 109.47090 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47162 * 299.99647 * 1 2 3 31 31 H 1.08998 * 109.47507 * 60.00237 * 1 2 3 32 32 H 1.08997 * 109.47545 * 60.00254 * 5 3 2 33 33 H 1.08998 * 109.47383 * 299.99428 * 5 3 2 34 34 H 1.08997 * 109.46699 * 59.99874 * 6 5 3 35 35 H 1.08998 * 109.46746 * 299.99956 * 6 5 3 36 36 H 0.96992 * 119.99363 * 180.02562 * 11 10 8 37 37 H 1.09005 * 109.46637 * 149.99516 * 16 7 6 38 38 H 1.09003 * 109.47150 * 29.99494 * 16 7 6 39 39 H 1.08005 * 120.01703 * 0.02562 * 22 21 20 40 40 H 1.07994 * 119.89795 * 180.02562 * 23 22 21 41 41 H 1.08005 * 119.87975 * 180.02562 * 24 23 22 42 42 H 0.96699 * 113.99944 * 270.20798 * 26 25 24 43 43 H 1.08003 * 120.09530 * 179.79515 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 6 4.0000 2.7422 -0.0011 7 7 5.4631 2.8188 -0.0011 8 6 6.1404 2.9761 1.1786 9 1 7.2048 3.1588 1.1700 10 6 5.4590 2.9006 2.3856 11 7 4.3438 2.2065 2.4695 12 14 6.1246 3.7843 3.8908 13 1 5.6626 5.1956 3.8809 14 1 5.6314 3.1105 5.1187 15 1 7.6091 3.7493 3.8692 16 6 6.2014 2.7273 -1.2631 17 6 6.5285 1.2846 -1.5502 18 7 5.7881 0.4459 -2.2198 19 7 6.3741 -0.6984 -2.2718 20 6 7.5174 -0.6284 -1.6313 21 6 8.4933 -1.7255 -1.4567 22 6 9.6749 -1.5053 -0.7467 23 6 10.5832 -2.5312 -0.5851 24 6 10.3267 -3.7786 -1.1241 25 6 9.1523 -4.0081 -1.8276 26 8 8.9031 -5.2374 -2.3508 27 6 8.2364 -2.9838 -2.0002 28 8 7.6336 0.6280 -1.1573 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.9556 0.7810 -0.8908 33 1 3.9563 0.7807 0.8892 34 1 3.6106 3.2364 0.8889 35 1 3.6099 3.2360 -0.8911 36 1 3.8675 2.1542 3.3128 37 1 7.1250 3.3010 -1.1861 38 1 5.5904 3.1291 -2.0715 39 1 9.8776 -0.5326 -0.3233 40 1 11.4967 -2.3598 -0.0352 41 1 11.0411 -4.5781 -0.9941 42 1 9.2364 -5.3568 -3.2507 43 1 7.3238 -3.1602 -2.5502 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001644209845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:08 Heat of formation + Delta-G solvation = -29.810471 kcal Electronic energy + Delta-G solvation = -30288.684493 eV Core-core repulsion = 25916.878844 eV Total energy + Delta-G solvation = -4371.805648 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.48437 -39.81171 -39.66117 -36.97676 -36.61785 -35.62661 -35.53270 -32.81801 -31.77557 -30.81623 -30.06671 -29.33990 -27.32041 -26.48243 -24.39915 -24.12198 -22.96031 -21.99896 -21.57744 -20.94626 -19.80435 -18.71224 -17.36813 -16.91760 -16.74118 -16.46041 -16.27238 -15.90386 -15.79299 -15.71780 -15.46608 -15.10631 -14.54353 -14.13632 -13.87415 -13.83639 -13.55207 -13.12343 -12.76265 -12.67033 -12.39028 -12.01057 -11.88500 -11.81434 -11.75253 -11.74271 -11.36118 -11.14985 -11.08729 -10.91094 -10.83212 -10.46096 -10.35093 -10.24689 -10.20427 -9.98256 -9.68309 -9.61207 -8.96678 -8.74793 -8.33102 -7.44444 -6.15774 -3.46734 0.56444 1.07096 1.98756 2.70629 2.89292 3.08374 3.25128 3.32895 3.33884 3.47624 3.54659 3.98300 4.16922 4.24975 4.66660 4.83384 4.95803 5.01621 5.05316 5.18433 5.24147 5.45494 5.47686 5.51464 5.55456 5.67248 5.76079 5.86768 5.95072 6.00556 6.08543 6.16891 6.17131 6.25920 6.31195 6.34999 6.49936 6.51366 6.66206 7.01614 7.29050 7.41508 7.45884 7.61122 7.95228 8.56409 8.81231 8.85696 9.41148 9.82731 10.88565 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.009019 B = 0.003520 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3103.772149 B = 7951.640569 C = 9679.056234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.368 6.368 3 C 0.475 3.525 4 O -0.524 6.524 5 C -0.128 4.128 6 C 0.178 3.822 7 N -0.561 5.561 8 C -0.275 4.275 9 H 0.086 0.914 10 C 0.012 3.988 11 N -0.886 5.886 12 Si 0.913 3.087 13 H -0.282 1.282 14 H -0.290 1.290 15 H -0.278 1.278 16 C 0.220 3.780 17 C 0.177 3.823 18 N -0.311 5.311 19 N -0.270 5.270 20 C 0.162 3.838 21 C 0.015 3.985 22 C -0.097 4.097 23 C -0.103 4.103 24 C -0.132 4.132 25 C 0.103 3.897 26 O -0.495 6.495 27 C -0.102 4.102 28 O -0.215 6.215 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.132 0.868 34 H 0.106 0.894 35 H 0.029 0.971 36 H 0.262 0.738 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.391 0.609 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.344 -8.239 -7.980 14.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.320 3.680 4 O -0.413 6.413 5 C -0.168 4.168 6 C 0.053 3.947 7 N -0.278 5.278 8 C -0.403 4.403 9 H 0.104 0.896 10 C -0.188 4.188 11 N -0.528 5.528 12 Si 0.741 3.259 13 H -0.208 1.208 14 H -0.216 1.216 15 H -0.203 1.203 16 C 0.088 3.912 17 C -0.035 4.035 18 N -0.159 5.159 19 N -0.119 5.119 20 C -0.046 4.046 21 C 0.013 3.987 22 C -0.117 4.117 23 C -0.121 4.121 24 C -0.152 4.152 25 C 0.059 3.941 26 O -0.305 6.305 27 C -0.122 4.122 28 O -0.093 6.093 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.150 0.850 34 H 0.123 0.877 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.150 0.850 42 H 0.246 0.754 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.696 -8.455 -7.921 13.382 hybrid contribution 1.039 0.491 1.216 1.673 sum 7.735 -7.964 -6.705 12.970 Atomic orbital electron populations 1.23082 0.78259 1.02610 1.01891 1.86591 1.22088 1.35112 1.84699 1.24444 0.92780 0.80379 0.70396 1.90552 1.67635 1.36389 1.46725 1.22410 0.84667 1.03990 1.05709 1.20924 0.80795 0.91744 1.01203 1.44930 1.02184 1.78802 1.01877 1.19454 0.94056 1.43873 0.82963 0.89596 1.24896 0.97455 0.98434 0.98036 1.70044 1.18849 1.37694 1.26197 0.86148 0.78469 0.79891 0.81348 1.20848 1.21633 1.20291 1.20197 0.98223 0.81848 0.90981 1.31509 0.79827 1.01684 0.90529 1.74290 1.25611 0.96227 1.19741 1.74528 1.03557 1.16343 1.17453 1.25156 0.96491 0.84735 0.98260 1.17041 0.91958 0.89060 1.00678 1.21351 0.92583 1.00479 0.97259 1.20943 0.99594 0.92084 0.99505 1.21578 0.96599 0.97678 0.99309 1.18194 0.93230 0.84447 0.98251 1.84863 1.81880 1.29043 1.34705 1.21419 1.00606 0.90318 0.99860 1.84923 1.41975 1.21414 1.61012 0.89047 0.92453 0.92566 0.89762 0.85036 0.87655 0.95258 0.92768 0.89488 0.88432 0.84589 0.84721 0.84991 0.75363 0.83796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.56 101.05 1.07 1.61 16 2 O -0.37 -7.40 10.56 -39.27 -0.41 -7.81 16 3 C 0.48 10.60 7.96 36.00 0.29 10.88 16 4 O -0.52 -12.35 15.73 -18.75 -0.29 -12.64 16 5 C -0.13 -2.95 5.48 -27.88 -0.15 -3.11 16 6 C 0.18 4.12 4.21 -4.03 -0.02 4.11 16 7 N -0.56 -12.58 2.52 -174.60 -0.44 -13.02 16 8 C -0.28 -6.70 9.70 -15.06 -0.15 -6.85 16 9 H 0.09 2.03 7.94 -52.49 -0.42 1.61 16 10 C 0.01 0.30 4.88 -17.43 -0.09 0.22 16 11 N -0.89 -23.19 8.63 55.49 0.48 -22.71 16 12 Si 0.91 20.13 29.63 -169.99 -5.04 15.09 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 16 C 0.22 4.06 6.33 -5.19 -0.03 4.03 16 17 C 0.18 3.52 7.56 -12.90 -0.10 3.42 16 18 N -0.31 -6.45 10.47 32.58 0.34 -6.11 16 19 N -0.27 -5.42 11.92 32.07 0.38 -5.04 16 20 C 0.16 2.99 7.99 -13.87 -0.11 2.88 16 21 C 0.01 0.22 5.87 -105.00 -0.62 -0.40 16 22 C -0.10 -1.22 9.72 -39.17 -0.38 -1.60 16 23 C -0.10 -1.02 10.03 -39.66 -0.40 -1.42 16 24 C -0.13 -1.28 9.98 -39.35 -0.39 -1.67 16 25 C 0.10 1.15 6.70 -39.28 -0.26 0.89 16 26 O -0.49 -4.76 13.50 -19.46 -0.26 -5.03 16 27 C -0.10 -1.36 9.64 -39.04 -0.38 -1.74 16 28 O -0.22 -4.20 10.67 4.04 0.04 -4.16 16 29 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 31 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 32 H 0.08 1.93 5.90 -51.93 -0.31 1.63 16 33 H 0.13 3.42 6.34 -51.93 -0.33 3.09 16 34 H 0.11 2.74 5.80 -51.93 -0.30 2.44 16 35 H 0.03 0.64 7.94 -51.93 -0.41 0.22 16 36 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 37 H 0.09 1.42 8.03 -51.93 -0.42 1.00 16 38 H 0.10 1.58 7.95 -51.93 -0.41 1.17 16 39 H 0.14 1.66 7.93 -52.48 -0.42 1.25 16 40 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 42 H 0.39 1.73 9.06 45.56 0.41 2.14 16 43 H 0.14 1.96 7.86 -52.48 -0.41 1.55 16 LS Contribution 375.14 15.07 5.65 5.65 Total: -1.00 -31.53 375.14 -5.53 -37.06 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -4.26 Total: 7.47 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: -1.72 Total: 11.25 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.76 Total: -46.89 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.93 Total: -29.64 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.04 Total: 15.09 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.53 -5.53 -37.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001644209845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.246 kcal (2) G-P(sol) polarization free energy of solvation -31.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds