Wall clock time and date at job start Wed Apr 1 2020 06:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42104 * 110.54559 * 2 1 4 4 O 1.42097 * 110.54335 * 223.25108 * 2 1 3 5 5 N 1.65598 * 104.45183 * 111.62621 * 2 1 3 6 6 C 1.47471 * 125.62816 * 270.00176 * 5 2 1 7 7 C 1.54906 * 104.81210 * 204.06537 * 6 5 2 8 8 C 1.55156 * 101.61451 * 323.04512 * 7 6 5 9 9 H 1.09006 * 110.71879 * 276.93547 * 8 7 6 10 10 N 1.46497 * 110.71740 * 153.84824 * 8 7 6 11 11 C 1.34776 * 120.00425 * 86.44973 * 10 8 7 12 12 O 1.21588 * 120.00008 * 0.02562 * 11 10 8 13 13 N 1.34777 * 119.99909 * 179.97438 * 11 10 8 14 14 C 1.47025 * 125.65301 * 0.02593 * 13 11 10 15 15 C 1.54320 * 107.27434 * 181.02116 * 14 13 11 16 16 C 1.55166 * 102.94015 * 22.19419 * 15 14 13 17 17 O 1.42893 * 111.00259 * 82.61214 * 16 15 14 18 18 C 1.50700 * 110.99889 * 206.42268 * 16 15 14 19 19 H 1.07997 * 120.00406 * 0.02562 * 18 16 15 20 20 C 1.37884 * 119.99313 * 180.02562 * 18 16 15 21 21 N 1.31515 * 120.00505 * 0.02562 * 20 18 16 22 22 Si 1.86801 * 119.99619 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46998 * 89.99974 * 22 20 18 24 24 H 1.48502 * 109.47043 * 209.99940 * 22 20 18 25 25 H 1.48502 * 109.47200 * 330.00159 * 22 20 18 26 26 C 1.47424 * 125.64608 * 179.72064 * 13 11 10 27 27 C 1.47017 * 125.65214 * 89.99629 * 5 2 1 28 28 H 1.08998 * 109.46860 * 308.37747 * 1 2 3 29 29 H 1.09001 * 109.46851 * 68.37470 * 1 2 3 30 30 H 1.08998 * 109.46798 * 188.37079 * 1 2 3 31 31 H 1.09008 * 110.34870 * 85.24666 * 6 5 2 32 32 H 1.09001 * 110.40581 * 322.91702 * 6 5 2 33 33 H 1.09002 * 111.00655 * 204.94912 * 7 6 5 34 34 H 1.09002 * 111.00329 * 81.13838 * 7 6 5 35 35 H 0.97005 * 119.99905 * 266.44795 * 10 8 7 36 36 H 1.08999 * 109.87872 * 300.44166 * 14 13 11 37 37 H 1.09000 * 109.87935 * 61.45032 * 14 13 11 38 38 H 1.08991 * 110.72104 * 140.55662 * 15 14 13 39 39 H 1.09003 * 110.72110 * 263.83208 * 15 14 13 40 40 H 0.96701 * 113.99785 * 180.02562 * 17 16 15 41 41 H 0.96992 * 120.00036 * 179.97438 * 21 20 18 42 42 H 1.09002 * 110.36629 * 274.74474 * 26 13 11 43 43 H 1.09004 * 110.37082 * 37.06741 * 26 13 11 44 44 H 1.08998 * 109.88206 * 59.55937 * 27 5 2 45 45 H 1.09004 * 110.01118 * 298.47030 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9117 5 7 2.2273 -0.5910 1.4907 6 6 2.4416 0.2167 2.7058 7 6 3.3679 -0.6474 3.5974 8 6 2.8319 -2.0754 3.3131 9 1 1.9618 -2.2912 3.9333 10 7 3.8807 -3.0751 3.5290 11 6 4.0848 -3.5826 4.7608 12 8 3.3981 -3.2109 5.6929 13 7 5.0494 -4.5027 4.9593 14 6 5.9478 -5.0389 3.9263 15 6 6.8624 -6.0777 4.6088 16 6 6.0510 -6.4807 5.8685 17 8 5.0724 -7.4725 5.5517 18 6 6.9635 -6.9583 6.9687 19 1 8.0318 -6.9826 6.8119 20 6 6.4344 -7.3642 8.1755 21 7 5.1335 -7.3350 8.3664 22 14 7.5653 -7.9569 9.5390 23 1 7.9666 -6.8045 10.3853 24 1 6.8532 -8.9587 10.3724 25 1 8.7753 -8.5786 8.9434 26 6 5.3826 -5.1336 6.2494 27 6 2.4410 -2.0073 1.8218 28 1 -0.3633 0.6380 0.8056 29 1 -0.3633 0.3787 -0.9554 30 1 -0.3633 -1.0167 0.1496 31 1 1.4932 0.4010 3.2106 32 1 2.9280 1.1593 2.4547 33 1 3.2504 -0.3881 4.6496 34 1 4.4086 -0.5518 3.2876 35 1 4.4283 -3.3720 2.7854 36 1 5.3644 -5.5183 3.1402 37 1 6.5485 -4.2338 3.5033 38 1 7.0195 -6.9389 3.9595 39 1 7.8142 -5.6273 4.8909 40 1 4.5403 -7.7556 6.3079 41 1 4.7613 -7.6209 9.2152 42 1 6.0773 -4.5078 6.8095 43 1 4.4773 -5.3107 6.8302 44 1 3.2454 -2.4140 1.2089 45 1 1.5244 -2.5724 1.6527 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645898270.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:27:05 Heat of formation + Delta-G solvation = -161.409491 kcal Electronic energy + Delta-G solvation = -29240.686534 eV Core-core repulsion = 24998.618275 eV Total energy + Delta-G solvation = -4242.068259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.34722 -39.74807 -38.66427 -38.20105 -37.03131 -36.03604 -35.09396 -34.12953 -31.95750 -30.97273 -30.22573 -29.74976 -29.19420 -26.82160 -24.31559 -23.49796 -22.21673 -21.40716 -21.07358 -19.91634 -19.29069 -18.85918 -18.71525 -17.71107 -17.22272 -17.01552 -16.87809 -16.72922 -16.23100 -15.89540 -15.53870 -15.11482 -14.82255 -14.74943 -14.60630 -14.32298 -14.08873 -13.93914 -13.76072 -13.69886 -13.47796 -13.33871 -13.23305 -13.16365 -13.02048 -12.82791 -12.62103 -12.52993 -12.44826 -12.30222 -12.19253 -12.07465 -11.98056 -11.86535 -11.31053 -11.18170 -10.63130 -10.31740 -10.18028 -9.96886 -9.29958 -8.24102 -6.40579 -0.75240 1.42872 1.45420 1.49781 1.55349 1.79795 2.17688 2.39482 2.94188 3.00139 3.02589 3.14494 3.41043 3.75875 3.83454 4.05909 4.09006 4.14816 4.18010 4.21650 4.27765 4.33481 4.37054 4.55019 4.65782 4.78380 4.79068 4.81593 4.94916 4.98669 5.07348 5.08820 5.11493 5.13727 5.30917 5.34898 5.42254 5.47566 5.58664 5.78997 6.04772 6.19449 6.66517 7.08675 7.32148 7.42079 7.60210 8.81468 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.030557 B = 0.002143 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.090063 B =13064.289987 C =13341.760784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.634 3.366 3 O -0.990 6.990 4 O -0.992 6.992 5 N -1.015 6.015 6 C 0.120 3.880 7 C -0.141 4.141 8 C 0.153 3.847 9 H 0.093 0.907 10 N -0.724 5.724 11 C 0.715 3.285 12 O -0.638 6.638 13 N -0.633 5.633 14 C 0.107 3.893 15 C -0.112 4.112 16 C 0.232 3.768 17 O -0.589 6.589 18 C -0.555 4.555 19 H 0.070 0.930 20 C 0.025 3.975 21 N -0.918 5.918 22 Si 0.965 3.035 23 H -0.277 1.277 24 H -0.284 1.284 25 H -0.266 1.266 26 C 0.126 3.874 27 C 0.119 3.881 28 H 0.149 0.851 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.408 0.592 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.377 0.623 41 H 0.270 0.730 42 H 0.042 0.958 43 H 0.039 0.961 44 H 0.079 0.921 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.709 14.198 -16.200 23.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.733 3.267 3 O -0.981 6.981 4 O -0.983 6.983 5 N -0.852 5.852 6 C -0.005 4.005 7 C -0.182 4.182 8 C 0.046 3.954 9 H 0.111 0.889 10 N -0.381 5.381 11 C 0.416 3.584 12 O -0.521 6.521 13 N -0.369 5.369 14 C -0.015 4.015 15 C -0.150 4.150 16 C 0.191 3.809 17 O -0.399 6.399 18 C -0.593 4.593 19 H 0.088 0.912 20 C -0.176 4.176 21 N -0.557 5.557 22 Si 0.790 3.210 23 H -0.203 1.203 24 H -0.210 1.210 25 H -0.190 1.190 26 C 0.003 3.997 27 C -0.007 4.007 28 H 0.167 0.833 29 H 0.164 0.836 30 H 0.165 0.835 31 H 0.114 0.886 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.245 0.755 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.228 0.772 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.097 0.903 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.540 14.849 -16.801 23.994 hybrid contribution -0.103 -0.765 1.784 1.944 sum -8.643 14.085 -15.017 22.329 Atomic orbital electron populations 1.30361 1.22954 1.13666 1.13398 1.04025 0.79355 0.72288 0.71051 1.93561 1.79761 1.39088 1.85700 1.93565 1.79719 1.62537 1.62429 1.58447 1.85674 1.14611 1.26516 1.22123 1.00398 0.94302 0.83708 1.23176 1.00127 0.94301 1.00569 1.21848 0.90361 0.87199 0.96020 0.88882 1.44917 1.39533 1.45458 1.08162 1.15650 0.80014 0.78956 0.83735 1.90847 1.51771 1.66103 1.43343 1.47839 1.35216 1.41956 1.11907 1.22102 0.91962 0.96982 0.90452 1.22601 0.97848 0.98116 0.96395 1.19883 0.85509 0.83259 0.92214 1.86048 1.52984 1.60350 1.40477 1.21842 0.94272 1.44700 0.98499 0.91224 1.25833 0.96592 0.94438 1.00703 1.69677 1.11996 1.47790 1.26277 0.85451 0.78926 0.78006 0.78608 1.20285 1.20959 1.18984 1.22719 0.98296 0.95059 0.83676 1.21831 1.03227 0.81701 0.93917 0.83276 0.83582 0.83472 0.88647 0.89356 0.90298 0.90759 0.75505 0.90839 0.89324 0.89784 0.89364 0.77243 0.92014 0.93991 0.94239 0.90313 0.88195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.66 10.99 113.37 1.25 -1.42 16 2 S 2.63 36.29 6.29 -56.49 -0.36 35.94 16 3 O -0.99 -20.67 17.28 -127.65 -2.21 -22.88 16 4 O -0.99 -21.14 17.60 -127.65 -2.25 -23.39 16 5 N -1.01 -14.07 3.62 -506.33 -1.83 -15.90 16 6 C 0.12 1.65 7.07 86.85 0.61 2.26 16 7 C -0.14 -2.73 6.76 31.98 0.22 -2.51 16 8 C 0.15 3.22 3.24 46.18 0.15 3.37 16 9 H 0.09 2.22 7.69 -2.38 -0.02 2.20 16 10 N -0.72 -18.98 5.16 -452.16 -2.33 -21.32 16 11 C 0.71 27.22 8.49 179.05 1.52 28.74 16 12 O -0.64 -29.70 16.32 -3.99 -0.07 -29.76 16 13 N -0.63 -25.02 3.32 -829.31 -2.76 -27.78 16 14 C 0.11 3.35 6.15 86.73 0.53 3.88 16 15 C -0.11 -4.12 6.12 31.78 0.19 -3.92 16 16 C 0.23 11.07 0.89 -10.07 -0.01 11.06 16 17 O -0.59 -30.24 13.19 -148.98 -1.97 -32.20 16 18 C -0.55 -28.48 8.25 25.60 0.21 -28.27 16 19 H 0.07 3.45 7.76 -2.91 -0.02 3.42 16 20 C 0.02 1.28 5.30 84.66 0.45 1.73 16 21 N -0.92 -49.66 10.72 21.45 0.23 -49.43 16 22 Si 0.96 41.39 29.54 68.60 2.03 43.42 16 23 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 25 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 26 C 0.13 6.12 5.65 86.93 0.49 6.61 16 27 C 0.12 1.81 6.64 86.73 0.58 2.38 16 28 H 0.15 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.15 0.21 8.14 -2.39 -0.02 0.20 16 30 H 0.15 0.22 8.14 -2.39 -0.02 0.21 16 31 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.09 1.23 7.67 -2.39 -0.02 1.21 16 33 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.41 8.60 7.30 -92.70 -0.68 7.93 16 36 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 39 H 0.09 3.02 8.01 -2.39 -0.02 3.00 16 40 H 0.38 20.53 6.93 -74.06 -0.51 20.02 16 41 H 0.27 14.03 8.31 -92.71 -0.77 13.25 16 42 H 0.04 2.11 8.03 -2.39 -0.02 2.09 16 43 H 0.04 2.21 7.64 -2.39 -0.02 2.19 16 44 H 0.08 1.22 7.69 -2.39 -0.02 1.20 16 45 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -77.48 378.39 -5.49 -82.97 By element: Atomic # 1 Polarization: 36.61 SS G_CDS: -0.17 Total: 36.44 kcal Atomic # 6 Polarization: 17.72 SS G_CDS: 6.19 Total: 23.92 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -6.70 Total: -114.44 kcal Atomic # 8 Polarization: -101.75 SS G_CDS: -6.48 Total: -108.24 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 16 Polarization: 36.29 SS G_CDS: -0.36 Total: 35.94 kcal Total: -77.48 -5.49 -82.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645898270.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.440 kcal (2) G-P(sol) polarization free energy of solvation -77.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds