Wall clock time and date at job start Wed Apr 1 2020 05:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99821 * 2 1 4 4 C 1.53006 * 109.46748 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.46866 * 179.97438 * 4 3 2 6 6 N 1.29945 * 126.28943 * 90.02241 * 5 4 3 7 7 O 1.21301 * 110.25300 * 179.97438 * 6 5 4 8 8 C 1.33641 * 109.81235 * 0.02562 * 7 6 5 9 9 C 1.50699 * 126.55289 * 179.97438 * 8 7 6 10 10 N 1.46498 * 109.47236 * 269.97938 * 9 8 7 11 11 C 1.46502 * 119.99704 * 274.99493 * 10 9 8 12 12 S 1.65601 * 120.00203 * 95.00082 * 10 9 8 13 13 O 1.42100 * 104.27745 * 206.07091 * 12 10 9 14 14 O 1.42107 * 104.27420 * 333.92702 * 12 10 9 15 15 C 1.81398 * 104.44796 * 89.99737 * 12 10 9 16 16 C 1.53011 * 109.46734 * 180.02562 * 15 12 10 17 17 C 1.53001 * 109.46750 * 179.97438 * 16 15 12 18 18 C 1.50700 * 109.46889 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99774 * 359.97438 * 18 17 16 20 20 C 1.37872 * 119.99918 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00240 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99741 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47258 * 89.99929 * 22 20 18 24 24 H 1.48504 * 109.47039 * 209.99972 * 22 20 18 25 25 H 1.48499 * 109.47285 * 329.99549 * 22 20 18 26 26 N 1.31132 * 106.89893 * 359.76747 * 8 7 6 27 27 H 1.08993 * 109.47448 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47367 * 300.00715 * 1 2 3 29 29 H 1.09000 * 109.46841 * 59.99911 * 1 2 3 30 30 H 1.09000 * 109.47490 * 59.99859 * 3 2 1 31 31 H 1.09001 * 109.47232 * 299.99213 * 3 2 1 32 32 H 1.08993 * 109.46955 * 299.99993 * 4 3 2 33 33 H 1.09000 * 109.47050 * 59.99822 * 4 3 2 34 34 H 1.08994 * 109.46823 * 29.98007 * 9 8 7 35 35 H 1.09001 * 109.47261 * 149.97419 * 9 8 7 36 36 H 1.09005 * 109.46692 * 90.00624 * 11 10 9 37 37 H 1.09001 * 109.47341 * 209.99729 * 11 10 9 38 38 H 1.08996 * 109.47286 * 330.00394 * 11 10 9 39 39 H 1.08996 * 109.47573 * 299.99797 * 15 12 10 40 40 H 1.08995 * 109.47240 * 60.00640 * 15 12 10 41 41 H 1.08996 * 109.46748 * 300.00086 * 16 15 12 42 42 H 1.08995 * 109.46912 * 60.00222 * 16 15 12 43 43 H 1.08998 * 109.47123 * 299.99826 * 17 16 15 44 44 H 1.09004 * 109.47263 * 60.00232 * 17 16 15 45 45 H 0.96995 * 120.00008 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1484 2.5614 0.0000 6 7 4.4612 3.2645 1.0471 7 8 4.9358 4.3291 0.7115 8 6 4.9715 4.4090 -0.6220 9 6 5.4868 5.5661 -1.4384 10 7 4.3919 6.5027 -1.7035 11 6 3.4972 6.2802 -2.8420 12 16 4.1657 7.8129 -0.7163 13 8 2.7815 8.1096 -0.8394 14 8 4.7214 7.4133 0.5291 15 6 5.1673 9.1248 -1.4687 16 6 5.0407 10.4033 -0.6376 17 6 5.8860 11.5096 -1.2718 18 6 5.7608 12.7690 -0.4536 19 1 5.1400 12.7793 0.4301 20 6 6.4379 13.9082 -0.8338 21 7 7.1934 13.8958 -1.9102 22 14 6.2832 15.4690 0.1808 23 1 7.3402 15.4883 1.2237 24 1 6.4387 16.6518 -0.7036 25 1 4.9476 15.5078 0.8289 26 7 4.4765 3.2862 -1.0845 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.6886 1.8465 0.8900 31 1 1.6887 1.8464 -0.8901 32 1 3.8567 0.6439 0.8908 33 1 3.8574 0.6435 -0.8891 34 1 6.2762 6.0767 -0.8870 35 1 5.8848 5.1956 -2.3831 36 1 2.6531 5.6670 -2.5263 37 1 3.1321 7.2391 -3.2100 38 1 4.0406 5.7691 -3.6367 39 1 6.2114 8.8132 -1.4983 40 1 4.8157 9.3141 -2.4828 41 1 3.9967 10.7151 -0.6075 42 1 5.3926 10.2137 0.3765 43 1 6.9299 11.1975 -1.3014 44 1 5.5345 11.6993 -2.2860 45 1 7.6694 14.6974 -2.1778 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654598210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:38 Heat of formation + Delta-G solvation = -53.689587 kcal Electronic energy + Delta-G solvation = -28162.801958 eV Core-core repulsion = 23925.404785 eV Total energy + Delta-G solvation = -4237.397173 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -45.84288 -38.48610 -37.26061 -37.06263 -36.27896 -35.86612 -34.74332 -33.50574 -32.24110 -31.34965 -28.77009 -27.89385 -27.10517 -25.62029 -24.69685 -23.75231 -23.39919 -21.52240 -20.65360 -19.10779 -18.39902 -17.86579 -17.64520 -16.86665 -16.80232 -16.57852 -16.37439 -16.02526 -15.54431 -15.36788 -15.12322 -14.51708 -14.25778 -14.17020 -13.94742 -13.59105 -13.36296 -12.89026 -12.85154 -12.65788 -12.40521 -12.34529 -12.06842 -12.00410 -11.90470 -11.87636 -11.80193 -11.78741 -11.53599 -11.33627 -11.30280 -10.95604 -10.90862 -10.49403 -10.29018 -10.16723 -10.01348 -9.83380 -9.38107 -9.13658 -8.44347 -6.09404 -4.12597 0.16387 0.86339 1.80913 2.50969 2.57043 2.96414 3.28337 3.34728 3.38592 3.48891 3.83679 3.85359 4.09666 4.23051 4.39649 4.46431 4.54875 4.67667 4.81516 4.86445 4.92155 4.93718 4.96060 5.03929 5.08629 5.19946 5.24328 5.26302 5.27346 5.38461 5.49930 5.51099 5.57288 5.67426 5.79611 6.01068 6.20911 6.36649 6.60184 6.80166 7.51815 7.61145 7.88293 7.89028 8.28367 8.93523 9.52495 11.01688 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.026714 B = 0.001922 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.895406 B =14566.860920 C =14654.366787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.068 3.932 4 C -0.024 4.024 5 C 0.162 3.838 6 N -0.376 5.376 7 O 0.105 5.895 8 C 0.165 3.835 9 C 0.218 3.782 10 N -1.002 6.002 11 C 0.093 3.907 12 S 2.584 3.416 13 O -0.951 6.951 14 O -0.947 6.947 15 C -0.602 4.602 16 C -0.107 4.107 17 C 0.031 3.969 18 C -0.528 4.528 19 H 0.058 0.942 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.894 3.106 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.273 1.273 26 N -0.468 5.468 27 H 0.089 0.911 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.022 0.978 44 H 0.021 0.979 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.935 -25.770 -2.718 26.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.309 6.309 3 C -0.010 4.010 4 C -0.063 4.063 5 C -0.111 4.111 6 N -0.080 5.080 7 O 0.043 5.957 8 C -0.058 4.058 9 C 0.089 3.911 10 N -0.838 5.838 11 C -0.052 4.052 12 S 2.682 3.318 13 O -0.942 6.942 14 O -0.938 6.938 15 C -0.735 4.735 16 C -0.146 4.146 17 C -0.007 4.007 18 C -0.566 4.566 19 H 0.076 0.924 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.722 3.278 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.198 1.198 26 N -0.203 5.203 27 H 0.108 0.892 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.119 0.881 33 H 0.124 0.876 34 H 0.142 0.858 35 H 0.149 0.851 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.040 0.960 44 H 0.039 0.961 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.547 -26.460 -1.559 27.559 hybrid contribution 0.219 1.445 -0.105 1.466 sum -7.327 -25.015 -1.665 26.119 Atomic orbital electron populations 1.22777 0.80274 1.03028 1.00359 1.87816 1.20303 1.27228 1.95540 1.22378 0.92239 0.85163 1.01251 1.19678 0.93338 0.87190 1.06076 1.25527 1.01755 0.99988 0.83840 1.74693 1.14700 0.94578 1.24027 1.85448 1.57057 1.28592 1.24558 1.29489 0.96861 0.96910 0.82545 1.19702 0.88453 0.84304 0.98639 1.57917 1.40904 1.39636 1.45316 1.21557 0.93206 1.02976 0.87469 1.06094 0.76074 0.75028 0.74630 1.93586 1.30219 1.84228 1.86135 1.93619 1.80460 1.80418 1.39253 1.30542 1.15046 1.14904 1.12969 1.21536 1.02785 0.92227 0.98096 1.19068 0.94502 0.91069 0.96109 1.21246 1.28715 0.95651 1.10974 0.92353 1.25009 0.95113 0.99034 0.95155 1.69947 1.30179 1.29011 1.24211 0.86558 0.78627 0.82606 0.80036 1.20542 1.21162 1.19755 1.71863 1.16126 1.02973 1.29359 0.89250 0.93834 0.93772 0.92764 0.92415 0.88118 0.87622 0.85813 0.85142 0.92514 0.90175 0.90322 0.85094 0.85179 0.91552 0.91393 0.96011 0.96069 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.50 10.70 -35.23 -0.38 -3.87 16 3 C 0.07 0.59 5.92 37.16 0.22 0.81 16 4 C -0.02 -0.21 6.21 -27.88 -0.17 -0.38 16 5 C 0.16 1.87 7.47 -156.36 -1.17 0.70 16 6 N -0.38 -5.09 12.16 30.90 0.38 -4.72 16 7 O 0.11 1.44 11.31 18.11 0.20 1.64 16 8 C 0.16 1.84 8.09 -13.06 -0.11 1.74 16 9 C 0.22 1.72 5.90 -5.20 -0.03 1.69 16 10 N -1.00 -9.66 3.10 -123.05 -0.38 -10.04 16 11 C 0.09 0.73 10.24 59.85 0.61 1.35 16 12 S 2.58 34.68 5.32 -107.50 -0.57 34.11 16 13 O -0.95 -15.75 17.09 -57.54 -0.98 -16.73 16 14 O -0.95 -15.03 16.99 -57.54 -0.98 -16.01 16 15 C -0.60 -8.14 6.18 37.16 0.23 -7.91 16 16 C -0.11 -2.03 5.16 -26.72 -0.14 -2.17 16 17 C 0.03 0.75 4.97 -27.88 -0.14 0.61 16 18 C -0.53 -14.47 9.11 -34.44 -0.31 -14.78 16 19 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -25.92 13.29 55.43 0.74 -25.19 16 22 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 N -0.47 -5.32 11.55 -9.87 -0.11 -5.44 16 27 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.12 0.77 7.61 -51.93 -0.40 0.37 16 35 H 0.13 0.57 7.96 -51.93 -0.41 0.16 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.59 7.79 -51.93 -0.40 0.19 16 38 H 0.08 0.41 7.94 -51.93 -0.41 0.00 16 39 H 0.13 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.13 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 399.42 15.07 6.02 6.02 Total: -1.00 -36.44 399.42 -8.17 -44.61 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -7.09 Total: -5.06 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: 0.01 Total: -15.51 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.62 Total: -45.38 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -2.13 Total: -34.97 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 34.68 SS G_CDS: -0.57 Total: 34.11 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.44 -8.17 -44.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654598210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.084 kcal (2) G-P(sol) polarization free energy of solvation -36.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds