Wall clock time and date at job start Wed Apr 1 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42098 * 108.57788 * 2 1 4 4 O 1.42106 * 108.57393 * 228.98107 * 2 1 3 5 5 C 1.81393 * 101.92619 * 114.48929 * 2 1 3 6 6 C 1.53001 * 109.47248 * 183.37235 * 5 2 1 7 7 C 1.53001 * 115.54894 * 294.04770 * 6 5 2 8 8 C 1.53004 * 109.47285 * 276.66208 * 7 6 5 9 9 N 1.46500 * 109.46713 * 182.20394 * 8 7 6 10 10 C 1.34783 * 119.99514 * 179.71954 * 9 8 7 11 11 O 1.21592 * 119.99863 * 0.28209 * 10 9 8 12 12 N 1.34776 * 119.99858 * 180.27384 * 10 9 8 13 13 C 1.46496 * 119.99875 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47105 * 180.02562 * 13 12 10 15 15 O 1.21287 * 119.99995 * 0.02562 * 14 13 12 16 16 N 1.34783 * 120.00002 * 179.97438 * 14 13 12 17 17 C 1.37093 * 119.99614 * 180.02562 * 16 14 13 18 18 H 1.07997 * 120.00872 * 0.02562 * 17 16 14 19 19 C 1.38954 * 119.99452 * 179.97438 * 17 16 14 20 20 N 1.31412 * 120.00299 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99674 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47348 * 60.00283 * 21 19 17 23 23 H 1.48507 * 109.46700 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46841 * 299.99952 * 21 19 17 25 25 C 1.52993 * 117.51738 * 79.74950 * 6 5 2 26 26 C 1.53000 * 117.49931 * 148.38407 * 6 5 2 27 27 H 1.09010 * 109.47062 * 305.50845 * 1 2 3 28 28 H 1.08999 * 109.47584 * 65.50836 * 1 2 3 29 29 H 1.09000 * 109.46833 * 185.51251 * 1 2 3 30 30 H 1.09004 * 109.46786 * 63.37060 * 5 2 1 31 31 H 1.09002 * 109.47150 * 303.37609 * 5 2 1 32 32 H 1.08993 * 109.47381 * 156.65821 * 7 6 5 33 33 H 1.09007 * 109.47129 * 36.66063 * 7 6 5 34 34 H 1.08993 * 109.47009 * 62.20608 * 8 7 6 35 35 H 1.08995 * 109.47016 * 302.20298 * 8 7 6 36 36 H 0.97000 * 120.00618 * 0.02562 * 9 8 7 37 37 H 0.97001 * 120.00086 * 0.02562 * 12 10 9 38 38 H 1.09006 * 109.47248 * 300.00084 * 13 12 10 39 39 H 1.09004 * 109.47536 * 60.00315 * 13 12 10 40 40 H 0.96994 * 119.99738 * 0.02562 * 16 14 13 41 41 H 0.96993 * 119.99956 * 180.02562 * 20 19 17 42 42 H 1.09001 * 117.49745 * 214.96620 * 25 6 5 43 43 H 1.08997 * 117.49970 * 359.97438 * 25 6 5 44 44 H 1.09000 * 117.49426 * 359.97177 * 26 6 5 45 45 H 1.08997 * 117.49902 * 144.99562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2666 -0.8841 -1.0163 5 6 2.1888 -0.7357 1.6151 6 6 3.7031 -0.7420 1.8336 7 6 4.5024 -1.6424 0.8894 8 6 4.4895 -3.0773 1.4204 9 7 5.2983 -3.9291 0.5449 10 6 5.4367 -5.2409 0.8216 11 8 4.8861 -5.7183 1.7949 12 7 6.1853 -6.0235 0.0193 13 6 6.3353 -7.4494 0.3197 14 6 7.2145 -8.0924 -0.7217 15 8 7.6713 -7.4251 -1.6257 16 7 7.4941 -9.4089 -0.6481 17 6 8.2943 -9.9937 -1.5952 18 1 8.7011 -9.3995 -2.4002 19 6 8.5830 -11.3507 -1.5190 20 7 8.0885 -12.0737 -0.5393 21 14 9.6740 -12.1475 -2.8092 22 1 11.0083 -11.4959 -2.8000 23 1 9.8263 -13.5929 -2.5043 24 1 9.0540 -11.9872 -4.1490 25 6 4.3575 0.5649 2.2860 26 6 4.2103 -0.5976 3.2699 27 1 -0.3634 0.5969 0.8366 28 1 -0.3634 0.4260 -0.9352 29 1 -0.3633 -1.0229 0.0987 30 1 1.8132 -1.7585 1.6444 31 1 1.7108 -0.1505 2.4007 32 1 5.5306 -1.2858 0.8310 33 1 4.0525 -1.6182 -0.1032 34 1 3.4646 -3.4475 1.4418 35 1 4.9035 -3.0953 2.4285 36 1 5.7378 -3.5482 -0.2314 37 1 6.6248 -5.6425 -0.7570 38 1 6.7912 -7.5677 1.3028 39 1 5.3555 -7.9271 0.3137 40 1 7.1291 -9.9425 0.0750 41 1 8.2904 -13.0209 -0.4859 42 1 5.3574 0.7832 1.9110 43 1 3.7092 1.4296 2.4276 44 1 3.4651 -0.4977 4.0590 45 1 5.1133 -1.1440 3.5421 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001682374607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:35 Heat of formation + Delta-G solvation = -145.478069 kcal Electronic energy + Delta-G solvation = -27629.643419 eV Core-core repulsion = 23388.265999 eV Total energy + Delta-G solvation = -4241.377420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.21725 -40.09621 -39.50562 -37.94644 -36.94860 -36.29096 -35.88439 -35.24835 -33.36663 -31.42276 -30.73304 -29.71343 -28.80947 -26.40468 -24.50969 -23.18480 -21.98145 -21.35324 -20.61730 -20.09472 -19.74514 -19.30886 -17.61968 -17.45501 -17.33908 -17.16602 -17.03439 -16.88065 -16.48387 -16.17699 -16.04273 -15.74976 -15.47654 -15.23638 -15.01133 -14.70144 -14.02256 -13.94343 -13.92794 -13.77989 -13.58399 -13.52954 -13.27998 -13.03395 -12.95727 -12.89319 -12.65941 -12.46216 -12.45891 -12.19197 -12.16554 -12.12979 -11.82844 -11.55592 -11.45325 -11.08775 -10.55096 -10.50262 -10.41492 -10.09431 -9.79761 -8.49980 -6.00204 -0.90270 1.38862 1.42908 1.53135 1.62747 1.90871 1.92072 2.12417 2.29476 2.65691 2.80315 3.05206 3.14638 3.17064 3.31841 3.51177 3.66021 3.83217 3.90866 4.09406 4.14962 4.21575 4.25977 4.31511 4.44578 4.45397 4.47774 4.54613 4.67971 4.85407 4.93124 4.97232 5.06763 5.12722 5.18388 5.27918 5.32014 5.39424 5.49908 5.91990 5.96472 6.49271 7.02620 7.04297 7.43500 7.53610 7.95690 8.66666 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.023397 B = 0.001664 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.428223 B =16826.167101 C =17281.282846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.646 4.646 2 S 2.407 3.593 3 O -0.977 6.977 4 O -0.983 6.983 5 C -0.564 4.564 6 C -0.139 4.139 7 C -0.120 4.120 8 C 0.145 3.855 9 N -0.736 5.736 10 C 0.704 3.296 11 O -0.631 6.631 12 N -0.726 5.726 13 C 0.142 3.858 14 C 0.433 3.567 15 O -0.625 6.625 16 N -0.559 5.559 17 C -0.338 4.338 18 H 0.086 0.914 19 C -0.011 4.011 20 N -0.916 5.916 21 Si 0.998 3.002 22 H -0.270 1.270 23 H -0.271 1.271 24 H -0.270 1.270 25 C -0.169 4.169 26 C -0.147 4.147 27 H 0.156 0.844 28 H 0.132 0.868 29 H 0.149 0.851 30 H 0.156 0.844 31 H 0.170 0.830 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.409 0.591 37 H 0.410 0.590 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.399 0.601 41 H 0.280 0.720 42 H 0.101 0.899 43 H 0.113 0.887 44 H 0.118 0.882 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.413 26.266 8.525 32.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.798 4.798 2 S 2.596 3.404 3 O -0.974 6.974 4 O -0.980 6.980 5 C -0.694 4.694 6 C -0.141 4.141 7 C -0.158 4.158 8 C 0.022 3.978 9 N -0.392 5.392 10 C 0.404 3.596 11 O -0.513 6.513 12 N -0.383 5.383 13 C 0.014 3.986 14 C 0.220 3.780 15 O -0.513 6.513 16 N -0.194 5.194 17 C -0.467 4.467 18 H 0.104 0.896 19 C -0.212 4.212 20 N -0.555 5.555 21 Si 0.821 3.179 22 H -0.195 1.195 23 H -0.196 1.196 24 H -0.195 1.195 25 C -0.206 4.206 26 C -0.185 4.185 27 H 0.174 0.826 28 H 0.151 0.849 29 H 0.168 0.832 30 H 0.174 0.826 31 H 0.188 0.812 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.245 0.755 37 H 0.247 0.753 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.233 0.767 41 H 0.089 0.911 42 H 0.120 0.880 43 H 0.131 0.869 44 H 0.136 0.864 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.017 26.356 8.172 31.905 hybrid contribution 0.266 -0.922 -0.434 1.053 sum -15.752 25.433 7.738 30.901 Atomic orbital electron populations 1.30173 1.22593 1.13739 1.13344 1.07905 0.79744 0.74724 0.78049 1.93541 1.80652 1.36033 1.87159 1.93548 1.80539 1.67491 1.56468 1.29841 1.01388 1.15805 1.22360 1.20807 0.91462 1.01785 1.00014 1.21684 1.01953 0.92560 0.99583 1.21190 0.94981 0.88413 0.93232 1.45026 1.55587 1.06363 1.32273 1.15938 0.79459 0.81895 0.82329 1.90870 1.54332 1.74790 1.31276 1.44714 1.53949 1.08412 1.31257 1.20584 0.99851 0.81026 0.97182 1.20435 0.86005 0.83024 0.88530 1.90468 1.58560 1.63265 1.38970 1.41824 1.43983 1.07372 1.26267 1.19700 1.26867 0.93053 1.07106 0.89602 1.26140 0.99004 0.96270 0.99785 1.69673 1.44914 1.08669 1.32289 0.84920 0.78155 0.77121 0.77721 1.19514 1.19585 1.19537 1.23384 1.02787 0.91692 1.02761 1.23178 1.03578 1.00912 0.90857 0.82555 0.84906 0.83241 0.82590 0.81247 0.89310 0.89341 0.91883 0.91518 0.75536 0.75270 0.88972 0.89022 0.76661 0.91059 0.88016 0.86853 0.86399 0.88272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.57 10.62 113.37 1.20 -0.37 16 2 S 2.41 26.26 5.20 -56.49 -0.29 25.97 16 3 O -0.98 -17.60 17.97 -127.37 -2.29 -19.88 16 4 O -0.98 -19.90 15.90 -127.37 -2.03 -21.93 16 5 C -0.56 -3.37 5.67 71.98 0.41 -2.96 16 6 C -0.14 -1.60 1.51 -52.18 -0.08 -1.68 16 7 C -0.12 -1.88 5.25 30.60 0.16 -1.72 16 8 C 0.15 2.92 5.57 86.38 0.48 3.40 16 9 N -0.74 -17.96 5.56 -478.53 -2.66 -20.62 16 10 C 0.70 23.08 8.57 179.05 1.53 24.62 16 11 O -0.63 -24.58 16.34 -4.01 -0.07 -24.65 16 12 N -0.73 -24.81 5.53 -482.28 -2.67 -27.48 16 13 C 0.14 5.35 6.15 85.63 0.53 5.87 16 14 C 0.43 20.31 7.85 87.66 0.69 21.00 16 15 O -0.62 -32.75 15.24 -3.05 -0.05 -32.80 16 16 N -0.56 -28.38 5.29 -306.98 -1.62 -30.00 16 17 C -0.34 -18.78 9.68 84.04 0.81 -17.96 16 18 H 0.09 5.01 7.16 -2.91 -0.02 4.98 16 19 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 20 N -0.92 -48.88 13.05 21.66 0.28 -48.60 16 21 Si 1.00 42.04 29.55 68.60 2.03 44.06 16 22 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 23 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 25 C -0.17 -1.83 9.77 30.59 0.30 -1.53 16 26 C -0.15 -1.39 9.42 30.60 0.29 -1.10 16 27 H 0.16 -0.47 8.14 -2.39 -0.02 -0.49 16 28 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.15 -0.14 8.14 -2.39 -0.02 -0.16 16 30 H 0.16 0.46 8.03 -2.39 -0.02 0.45 16 31 H 0.17 -0.23 8.09 -2.39 -0.02 -0.24 16 32 H 0.09 1.25 7.92 -2.39 -0.02 1.24 16 33 H 0.09 1.61 5.58 -2.38 -0.01 1.60 16 34 H 0.06 1.30 8.03 -2.39 -0.02 1.28 16 35 H 0.07 1.36 7.37 -2.39 -0.02 1.35 16 36 H 0.41 8.26 8.49 -92.71 -0.79 7.47 16 37 H 0.41 13.71 7.45 -92.71 -0.69 13.02 16 38 H 0.09 3.31 8.14 -2.38 -0.02 3.29 16 39 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 40 H 0.40 19.44 7.90 -92.71 -0.73 18.71 16 41 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 42 H 0.10 1.13 8.06 -2.39 -0.02 1.11 16 43 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.12 0.68 8.14 -2.39 -0.02 0.67 16 45 H 0.10 1.05 7.74 -2.39 -0.02 1.03 16 Total: -1.00 -82.70 393.65 -3.73 -86.43 By element: Atomic # 1 Polarization: 43.21 SS G_CDS: -1.16 Total: 42.05 kcal Atomic # 6 Polarization: 20.65 SS G_CDS: 6.79 Total: 27.44 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -6.67 Total: -126.70 kcal Atomic # 8 Polarization: -94.83 SS G_CDS: -4.43 Total: -99.26 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 16 Polarization: 26.26 SS G_CDS: -0.29 Total: 25.97 kcal Total: -82.70 -3.73 -86.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001682374607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.045 kcal (2) G-P(sol) polarization free energy of solvation -82.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds