Wall clock time and date at job start Wed Apr 1 2020 05:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46498 * 120.00029 * 2 1 4 4 C 1.52999 * 109.47379 * 269.99923 * 3 2 1 5 5 N 1.46891 * 109.47126 * 179.97438 * 4 3 2 6 6 C 1.46908 * 110.99853 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.46945 * 179.97438 * 6 5 4 8 8 O 1.21291 * 120.00195 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99636 * 179.97438 * 7 6 5 10 10 C 1.37101 * 119.99989 * 180.02562 * 9 7 6 11 11 H 1.07995 * 119.99774 * 359.97438 * 10 9 7 12 12 C 1.38950 * 120.00186 * 180.02562 * 10 9 7 13 13 N 1.31418 * 119.99666 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 119.99999 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47365 * 89.99754 * 14 12 10 16 16 H 1.48502 * 109.46927 * 209.99397 * 14 12 10 17 17 H 1.48494 * 109.47420 * 329.99665 * 14 12 10 18 18 C 1.34777 * 120.00016 * 179.97438 * 2 1 3 19 19 O 1.21280 * 120.00069 * 180.02562 * 18 2 1 20 20 C 1.50706 * 120.00107 * 0.02562 * 18 2 1 21 21 C 1.52989 * 109.47268 * 179.97438 * 20 18 2 22 22 C 1.53046 * 113.15245 * 275.37017 * 21 20 18 23 23 S 1.81421 * 89.89146 * 211.85103 * 22 21 20 24 24 O 1.42100 * 112.75626 * 280.47671 * 23 22 21 25 25 O 1.42102 * 112.75037 * 136.72699 * 23 22 21 26 26 C 1.53046 * 113.15293 * 174.99935 * 21 20 18 27 27 H 1.09006 * 109.47342 * 270.00153 * 1 2 3 28 28 H 1.09000 * 109.47139 * 29.99792 * 1 2 3 29 29 H 1.08995 * 109.47254 * 150.00293 * 1 2 3 30 30 H 1.09003 * 109.47262 * 29.99900 * 3 2 1 31 31 H 1.09007 * 109.47182 * 149.99652 * 3 2 1 32 32 H 1.09003 * 109.46905 * 300.00196 * 4 3 2 33 33 H 1.08996 * 109.46725 * 59.99875 * 4 3 2 34 34 H 1.00907 * 111.00428 * 56.05006 * 5 4 3 35 35 H 1.08997 * 109.47305 * 300.00172 * 6 5 4 36 36 H 1.08997 * 109.46657 * 60.00452 * 6 5 4 37 37 H 0.97002 * 120.00159 * 0.02562 * 9 7 6 38 38 H 0.97000 * 119.99741 * 180.02562 * 13 12 10 39 39 H 1.09003 * 109.47000 * 59.98851 * 20 18 2 40 40 H 1.09005 * 109.46757 * 299.99893 * 20 18 2 41 41 H 1.08997 * 112.53000 * 45.18339 * 21 20 18 42 42 H 1.08999 * 113.14496 * 327.11375 * 22 21 20 43 43 H 1.08999 * 113.14487 * 96.59446 * 22 21 20 44 44 H 1.08997 * 113.14353 * 263.40546 * 26 21 20 45 45 H 1.08999 * 113.14822 * 32.88700 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1864 2.9828 -1.4424 6 6 3.4502 3.4385 -2.8139 7 6 4.2023 4.7438 -2.7736 8 8 4.4907 5.2449 -1.7074 9 7 4.5554 5.3537 -3.9224 10 6 5.2401 6.5409 -3.8859 11 1 5.4962 6.9876 -2.9365 12 6 5.6037 7.1701 -5.0702 13 7 5.2917 6.6268 -6.2255 14 14 6.5360 8.7880 -5.0204 15 1 7.9961 8.5177 -5.0060 16 1 6.1935 9.5937 -6.2199 17 1 6.1595 9.5387 -3.7957 18 6 2.1388 -1.1672 0.0005 19 8 3.3516 -1.1672 0.0010 20 6 1.3853 -2.4724 0.0005 21 6 2.3795 -3.6352 0.0005 22 6 2.8706 -4.0070 -1.4005 23 16 3.0227 -5.7394 -0.8837 24 8 4.2078 -5.9893 -0.1405 25 8 2.5277 -6.6487 -1.8571 26 6 1.7050 -5.0036 0.1232 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1384 0.5139 32 1 3.0416 0.9507 -1.9563 33 1 1.5001 1.8407 -1.9563 34 1 4.0440 2.9057 -0.9162 35 1 4.0468 2.6910 -3.3367 36 1 2.5049 3.5803 -3.3377 37 1 4.3251 4.9527 -4.7751 38 1 5.5458 7.0658 -7.0523 39 1 0.7589 -2.5302 -0.8896 40 1 0.7583 -2.5299 0.8903 41 1 3.1903 -3.4915 0.7147 42 1 2.1170 -3.8548 -2.1731 43 1 3.8271 -3.5501 -1.6545 44 1 1.6852 -5.3813 1.1454 45 1 0.7267 -5.0435 -0.3558 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691372148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:38 Heat of formation + Delta-G solvation = -111.374360 kcal Electronic energy + Delta-G solvation = -27459.307797 eV Core-core repulsion = 23219.409224 eV Total energy + Delta-G solvation = -4239.898572 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -40.45466 -38.32910 -37.91898 -37.47926 -36.50141 -36.27175 -35.04361 -33.82876 -31.28023 -30.82208 -28.97102 -27.18491 -27.14220 -25.83096 -24.02006 -22.47955 -21.40226 -19.65465 -19.30700 -19.12861 -17.89945 -17.55706 -17.13186 -16.93267 -16.62390 -16.42087 -16.08170 -15.82455 -15.55990 -15.13709 -14.59249 -14.28149 -13.98294 -13.75891 -13.72046 -13.63063 -13.47501 -13.28719 -13.14445 -12.88220 -12.73749 -12.70024 -12.66902 -12.25710 -12.06542 -11.83030 -11.69621 -11.53629 -11.50730 -11.18233 -11.08006 -10.98756 -10.80391 -10.39401 -10.22230 -10.11053 -9.51197 -9.04615 -8.47332 -8.10418 -7.96461 -6.41923 -3.82746 -0.33294 1.51424 2.28397 2.58278 3.17971 3.19526 3.26552 3.32667 3.48998 3.57496 3.90382 4.01389 4.12200 4.26351 4.37726 4.43437 4.57325 4.60154 4.71306 4.83901 4.91768 4.94233 4.97881 5.01973 5.16759 5.18459 5.26533 5.28176 5.29785 5.45515 5.50599 5.70852 5.81887 5.84426 5.96540 6.14955 6.27004 7.01321 7.14998 7.55167 7.60615 7.83428 8.06012 8.60875 9.17565 9.53848 10.05220 10.75841 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.017570 B = 0.001636 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.269509 B =17115.270659 C =18081.222316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.615 5.615 3 C 0.116 3.884 4 C 0.047 3.953 5 N -0.667 5.667 6 C 0.053 3.947 7 C 0.441 3.559 8 O -0.583 6.583 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.021 3.979 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.510 3.490 19 O -0.532 6.532 20 C -0.117 4.117 21 C -0.054 4.054 22 C -0.596 4.596 23 S 2.408 3.592 24 O -0.912 6.912 25 O -0.928 6.928 26 C -0.601 4.601 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.030 0.970 33 H 0.070 0.930 34 H 0.351 0.649 35 H 0.044 0.956 36 H 0.085 0.915 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.124 0.876 42 H 0.142 0.858 43 H 0.131 0.869 44 H 0.127 0.873 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.438 -25.073 10.755 30.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.349 5.349 3 C -0.007 4.007 4 C -0.084 4.084 5 N -0.300 5.300 6 C -0.080 4.080 7 C 0.226 3.774 8 O -0.467 6.467 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C 0.297 3.703 19 O -0.408 6.408 20 C -0.158 4.158 21 C -0.074 4.074 22 C -0.725 4.725 23 S 2.589 3.411 24 O -0.909 6.909 25 O -0.925 6.925 26 C -0.730 4.730 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.171 0.829 35 H 0.062 0.938 36 H 0.103 0.897 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.142 0.858 42 H 0.160 0.840 43 H 0.150 0.850 44 H 0.145 0.855 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.513 -25.315 11.137 30.781 hybrid contribution 0.209 1.081 -0.809 1.367 sum -13.305 -24.234 10.328 29.512 Atomic orbital electron populations 1.21874 0.79220 1.03625 1.02137 1.47848 1.07185 1.06193 1.73720 1.21442 0.98306 0.83772 0.97175 1.22245 0.99005 0.90605 0.96573 1.60033 1.28453 1.27757 1.13728 1.21655 1.00214 0.96142 0.90013 1.19784 0.85215 0.87317 0.85055 1.90522 1.59302 1.67241 1.29638 1.41863 1.50018 1.21389 1.06756 1.19711 1.30944 0.97666 0.94558 0.87888 1.25277 0.98185 0.99924 0.94642 1.69618 1.47064 1.40170 0.97486 0.85838 0.79404 0.81103 0.77823 1.20415 1.20929 1.19399 1.20624 0.88170 0.85341 0.76135 1.90737 1.13842 1.87255 1.48995 1.21536 0.98231 0.90950 1.05114 1.21235 0.98335 0.92399 0.95474 1.31040 1.11204 1.25238 1.05029 1.08448 0.77384 0.77319 0.77909 1.93736 1.42448 1.84541 1.70187 1.93648 1.80337 1.61288 1.57233 1.31069 1.18180 1.07380 1.16345 0.92233 0.90393 0.90997 0.89271 0.89652 0.95181 0.91197 0.82944 0.93836 0.89651 0.77460 0.91875 0.88041 0.87830 0.85815 0.83967 0.85038 0.85468 0.83750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.33 10.24 59.84 0.61 0.95 16 2 N -0.62 -5.12 2.87 -181.57 -0.52 -5.65 16 3 C 0.12 1.24 5.67 -4.04 -0.02 1.22 16 4 C 0.05 0.58 6.01 -3.83 -0.02 0.56 16 5 N -0.67 -10.90 6.13 -115.06 -0.70 -11.61 16 6 C 0.05 0.95 6.17 -4.97 -0.03 0.91 16 7 C 0.44 10.56 7.82 -10.99 -0.09 10.47 16 8 O -0.58 -16.01 15.78 5.55 0.09 -15.92 16 9 N -0.56 -14.45 5.29 -10.96 -0.06 -14.51 16 10 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 11 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 12 C 0.02 0.57 5.50 -17.46 -0.10 0.48 16 13 N -0.90 -24.68 13.05 55.50 0.72 -23.95 16 14 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 C 0.51 4.71 7.67 -10.98 -0.08 4.62 16 19 O -0.53 -7.13 15.36 5.56 0.09 -7.05 16 20 C -0.12 -0.56 4.03 -27.89 -0.11 -0.68 16 21 C -0.05 -0.28 2.80 -90.58 -0.25 -0.53 16 22 C -0.60 -2.97 7.48 37.18 0.28 -2.69 16 23 S 2.41 12.53 7.55 -107.50 -0.81 11.72 16 24 O -0.91 -8.39 18.18 -57.30 -1.04 -9.43 16 25 O -0.93 -7.88 18.18 -57.30 -1.04 -8.92 16 26 C -0.60 -1.55 7.50 37.18 0.28 -1.27 16 27 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 29 H 0.07 0.17 6.44 -51.93 -0.33 -0.16 16 30 H 0.09 0.88 8.07 -51.93 -0.42 0.46 16 31 H 0.09 1.06 7.42 -51.93 -0.39 0.67 16 32 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.35 6.06 8.43 -39.29 -0.33 5.73 16 35 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 38 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.10 0.28 7.15 -51.93 -0.37 -0.09 16 40 H 0.10 0.28 8.11 -51.93 -0.42 -0.14 16 41 H 0.12 0.81 7.71 -51.93 -0.40 0.41 16 42 H 0.14 0.45 7.94 -51.93 -0.41 0.04 16 43 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.13 0.16 8.14 -51.93 -0.42 -0.26 16 45 H 0.14 0.10 8.12 -51.93 -0.42 -0.32 16 LS Contribution 391.64 15.07 5.90 5.90 Total: -1.00 -39.78 391.64 -8.80 -48.57 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -6.71 Total: 9.20 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 0.32 Total: 5.47 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.56 Total: -55.72 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -1.91 Total: -41.31 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 12.53 SS G_CDS: -0.81 Total: 11.72 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -39.78 -8.80 -48.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691372148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.800 kcal (2) G-P(sol) polarization free energy of solvation -39.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds