Wall clock time and date at job start Wed Apr 1 2020 05:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46498 * 120.00029 * 2 1 4 4 C 1.52999 * 109.47379 * 269.99923 * 3 2 1 5 5 N 1.46891 * 109.47126 * 179.97438 * 4 3 2 6 6 C 1.46908 * 110.99853 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.46945 * 179.97438 * 6 5 4 8 8 O 1.21291 * 120.00195 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99636 * 179.97438 * 7 6 5 10 10 C 1.37101 * 119.99989 * 180.02562 * 9 7 6 11 11 H 1.07995 * 119.99774 * 359.97438 * 10 9 7 12 12 C 1.38950 * 120.00186 * 180.02562 * 10 9 7 13 13 N 1.31418 * 119.99666 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 119.99999 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47365 * 89.99754 * 14 12 10 16 16 H 1.48502 * 109.46927 * 209.99397 * 14 12 10 17 17 H 1.48494 * 109.47420 * 329.99665 * 14 12 10 18 18 C 1.34777 * 120.00016 * 179.97438 * 2 1 3 19 19 O 1.21280 * 120.00069 * 180.02562 * 18 2 1 20 20 C 1.50706 * 120.00107 * 0.02562 * 18 2 1 21 21 C 1.52989 * 109.47268 * 179.97438 * 20 18 2 22 22 C 1.53046 * 113.15245 * 275.37017 * 21 20 18 23 23 S 1.81421 * 89.89146 * 211.85103 * 22 21 20 24 24 O 1.42100 * 112.75626 * 280.47671 * 23 22 21 25 25 O 1.42102 * 112.75037 * 136.72699 * 23 22 21 26 26 C 1.53046 * 113.15293 * 174.99935 * 21 20 18 27 27 H 1.09006 * 109.47342 * 270.00153 * 1 2 3 28 28 H 1.09000 * 109.47139 * 29.99792 * 1 2 3 29 29 H 1.08995 * 109.47254 * 150.00293 * 1 2 3 30 30 H 1.09003 * 109.47262 * 29.99900 * 3 2 1 31 31 H 1.09007 * 109.47182 * 149.99652 * 3 2 1 32 32 H 1.09003 * 109.46905 * 300.00196 * 4 3 2 33 33 H 1.08996 * 109.46725 * 59.99875 * 4 3 2 34 34 H 1.00907 * 111.00428 * 56.05006 * 5 4 3 35 35 H 1.08997 * 109.47305 * 300.00172 * 6 5 4 36 36 H 1.08997 * 109.46657 * 60.00452 * 6 5 4 37 37 H 0.97002 * 120.00159 * 0.02562 * 9 7 6 38 38 H 0.97000 * 119.99741 * 180.02562 * 13 12 10 39 39 H 1.09003 * 109.47000 * 59.98851 * 20 18 2 40 40 H 1.09005 * 109.46757 * 299.99893 * 20 18 2 41 41 H 1.08997 * 112.53000 * 45.18339 * 21 20 18 42 42 H 1.08999 * 113.14496 * 327.11375 * 22 21 20 43 43 H 1.08999 * 113.14487 * 96.59446 * 22 21 20 44 44 H 1.08997 * 113.14353 * 263.40546 * 26 21 20 45 45 H 1.08999 * 113.14822 * 32.88700 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1864 2.9828 -1.4424 6 6 3.4502 3.4385 -2.8139 7 6 4.2023 4.7438 -2.7736 8 8 4.4907 5.2449 -1.7074 9 7 4.5554 5.3537 -3.9224 10 6 5.2401 6.5409 -3.8859 11 1 5.4962 6.9876 -2.9365 12 6 5.6037 7.1701 -5.0702 13 7 5.2917 6.6268 -6.2255 14 14 6.5360 8.7880 -5.0204 15 1 7.9961 8.5177 -5.0060 16 1 6.1935 9.5937 -6.2199 17 1 6.1595 9.5387 -3.7957 18 6 2.1388 -1.1672 0.0005 19 8 3.3516 -1.1672 0.0010 20 6 1.3853 -2.4724 0.0005 21 6 2.3795 -3.6352 0.0005 22 6 2.8706 -4.0070 -1.4005 23 16 3.0227 -5.7394 -0.8837 24 8 4.2078 -5.9893 -0.1405 25 8 2.5277 -6.6487 -1.8571 26 6 1.7050 -5.0036 0.1232 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1384 0.5139 32 1 3.0416 0.9507 -1.9563 33 1 1.5001 1.8407 -1.9563 34 1 4.0440 2.9057 -0.9162 35 1 4.0468 2.6910 -3.3367 36 1 2.5049 3.5803 -3.3377 37 1 4.3251 4.9527 -4.7751 38 1 5.5458 7.0658 -7.0523 39 1 0.7589 -2.5302 -0.8896 40 1 0.7583 -2.5299 0.8903 41 1 3.1903 -3.4915 0.7147 42 1 2.1170 -3.8548 -2.1731 43 1 3.8271 -3.5501 -1.6545 44 1 1.6852 -5.3813 1.1454 45 1 0.7267 -5.0435 -0.3558 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691372148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:37 Heat of formation + Delta-G solvation = -145.957316 kcal Electronic energy + Delta-G solvation = -27460.807426 eV Core-core repulsion = 23219.409224 eV Total energy + Delta-G solvation = -4241.398202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 347.139 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.10645 -40.18181 -38.45849 -38.04445 -37.27691 -36.97713 -36.22651 -35.71185 -33.30453 -31.69131 -29.73807 -28.03803 -27.50313 -27.07688 -25.59205 -23.47035 -21.95530 -21.14728 -20.14872 -19.90301 -19.71022 -18.18307 -17.92961 -17.64508 -17.40618 -17.10910 -17.01730 -16.80076 -16.60092 -16.39232 -15.92013 -15.73645 -15.30046 -14.99661 -14.80280 -14.20668 -14.05970 -14.02214 -13.84217 -13.78589 -13.53856 -13.39757 -13.32317 -13.25997 -13.24040 -13.08511 -12.90042 -12.72109 -12.43789 -12.23943 -12.12788 -12.11280 -12.01841 -11.53108 -11.51628 -11.17932 -10.81528 -10.41742 -10.04396 -9.69052 -9.45676 -8.48751 -5.97838 -0.74890 1.14724 1.36983 1.40974 1.53983 1.64629 1.95632 2.01457 2.28613 2.79930 2.94951 3.10874 3.18015 3.22387 3.50636 3.61125 3.86677 3.97611 4.03958 4.13120 4.24080 4.28799 4.37561 4.41170 4.44582 4.47943 4.54870 4.57159 4.69971 4.75091 4.80243 4.82217 4.95441 4.97809 5.04240 5.16678 5.38965 5.47230 5.81712 6.03749 6.25212 6.42681 6.57026 7.09822 7.19794 7.52614 8.07711 8.68629 Molecular weight = 347.14amu Principal moments of inertia in cm(-1) A = 0.017570 B = 0.001636 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.269509 B =17115.270659 C =18081.222316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.614 5.614 3 C 0.121 3.879 4 C 0.056 3.944 5 N -0.677 5.677 6 C 0.067 3.933 7 C 0.437 3.563 8 O -0.623 6.623 9 N -0.572 5.572 10 C -0.335 4.335 11 H 0.079 0.921 12 C -0.014 4.014 13 N -0.920 5.920 14 Si 0.995 3.005 15 H -0.272 1.272 16 H -0.269 1.269 17 H -0.272 1.272 18 C 0.498 3.502 19 O -0.587 6.587 20 C -0.110 4.110 21 C -0.067 4.067 22 C -0.596 4.596 23 S 2.412 3.588 24 O -0.962 6.962 25 O -0.964 6.964 26 C -0.559 4.559 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.019 0.981 33 H 0.088 0.912 34 H 0.342 0.658 35 H 0.060 0.940 36 H 0.109 0.891 37 H 0.397 0.603 38 H 0.278 0.722 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.102 0.898 42 H 0.166 0.834 43 H 0.111 0.889 44 H 0.148 0.852 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.450 -25.594 10.631 32.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.347 5.347 3 C -0.003 4.003 4 C -0.074 4.074 5 N -0.309 5.309 6 C -0.066 4.066 7 C 0.224 3.776 8 O -0.509 6.509 9 N -0.209 5.209 10 C -0.465 4.465 11 H 0.097 0.903 12 C -0.214 4.214 13 N -0.561 5.561 14 Si 0.819 3.181 15 H -0.197 1.197 16 H -0.194 1.194 17 H -0.197 1.197 18 C 0.288 3.712 19 O -0.467 6.467 20 C -0.151 4.151 21 C -0.088 4.088 22 C -0.725 4.725 23 S 2.599 3.401 24 O -0.960 6.960 25 O -0.961 6.961 26 C -0.691 4.691 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.078 0.922 32 H 0.037 0.963 33 H 0.106 0.894 34 H 0.160 0.840 35 H 0.078 0.922 36 H 0.127 0.873 37 H 0.231 0.769 38 H 0.088 0.912 39 H 0.152 0.848 40 H 0.154 0.846 41 H 0.120 0.880 42 H 0.184 0.816 43 H 0.130 0.870 44 H 0.167 0.833 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -16.552 -25.892 10.977 32.633 hybrid contribution 1.081 1.276 -0.732 1.826 sum -15.471 -24.616 10.244 30.826 Atomic orbital electron populations 1.22187 0.76401 1.05221 1.03684 1.47969 1.08809 1.04954 1.72961 1.21212 0.97899 0.85490 0.95686 1.22262 0.98813 0.88393 0.97958 1.60065 1.28185 1.30097 1.12564 1.21522 1.00537 0.92992 0.91522 1.20821 0.84231 0.88646 0.83877 1.90490 1.60673 1.68796 1.30967 1.41928 1.50317 1.21160 1.07508 1.19682 1.33197 0.99384 0.94221 0.90271 1.26078 0.98415 1.02914 0.93960 1.69676 1.47142 1.41304 0.97930 0.84898 0.78200 0.77035 0.78014 1.19702 1.19389 1.19722 1.21535 0.87865 0.86873 0.74877 1.90723 1.16439 1.88065 1.51471 1.21659 0.97862 0.87444 1.08127 1.21283 0.98572 0.94152 0.94838 1.31149 1.11121 1.24195 1.06080 1.08052 0.77423 0.76936 0.77692 1.93665 1.45758 1.85384 1.71154 1.93593 1.80737 1.62830 1.58976 1.30829 1.17588 1.03726 1.16966 0.90707 0.90310 0.87977 0.88371 0.92207 0.96266 0.89361 0.83968 0.92232 0.87277 0.76941 0.91237 0.84793 0.84633 0.87978 0.81572 0.87001 0.83334 0.80262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.33 10.24 127.77 1.31 1.63 16 2 N -0.61 -8.85 2.87 -846.75 -2.43 -11.28 16 3 C 0.12 2.50 5.67 86.38 0.49 2.99 16 4 C 0.06 1.34 6.01 86.30 0.52 1.85 16 5 N -0.68 -21.91 6.13 -517.94 -3.17 -25.09 16 6 C 0.07 2.35 6.17 85.56 0.53 2.88 16 7 C 0.44 21.22 7.82 87.66 0.69 21.91 16 8 O -0.62 -35.18 15.78 -3.06 -0.05 -35.22 16 9 N -0.57 -29.82 5.29 -306.99 -1.62 -31.44 16 10 C -0.34 -19.29 9.68 84.04 0.81 -18.48 16 11 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 12 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 13 N -0.92 -49.91 13.05 21.66 0.28 -49.62 16 14 Si 1.00 43.24 29.55 68.60 2.03 45.27 16 15 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 16 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 18 C 0.50 8.36 7.67 87.66 0.67 9.03 16 19 O -0.59 -16.07 15.36 -3.03 -0.05 -16.12 16 20 C -0.11 -0.62 4.03 29.85 0.12 -0.50 16 21 C -0.07 -0.56 2.80 -10.77 -0.03 -0.59 16 22 C -0.60 -5.30 7.48 72.00 0.54 -4.76 16 23 S 2.41 24.42 7.55 -56.49 -0.43 24.00 16 24 O -0.96 -19.02 18.18 -127.88 -2.32 -21.35 16 25 O -0.96 -16.14 18.18 -127.88 -2.32 -18.46 16 26 C -0.56 -0.86 7.50 72.00 0.54 -0.33 16 27 H 0.07 0.19 8.14 -2.38 -0.02 0.17 16 28 H 0.08 0.41 8.07 -2.39 -0.02 0.40 16 29 H 0.10 -0.10 6.44 -2.39 -0.02 -0.11 16 30 H 0.10 1.83 8.07 -2.39 -0.02 1.81 16 31 H 0.06 1.55 7.42 -2.38 -0.02 1.53 16 32 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.34 12.12 8.43 -89.69 -0.76 11.36 16 35 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 37 H 0.40 19.56 7.90 -92.71 -0.73 18.83 16 38 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 39 H 0.13 -0.06 7.15 -2.39 -0.02 -0.08 16 40 H 0.14 -0.04 8.11 -2.38 -0.02 -0.05 16 41 H 0.10 1.33 7.71 -2.39 -0.02 1.31 16 42 H 0.17 0.60 7.94 -2.39 -0.02 0.58 16 43 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.15 -0.24 8.14 -2.39 -0.02 -0.26 16 45 H 0.18 -0.83 8.12 -2.39 -0.02 -0.85 16 Total: -1.00 -90.57 391.64 -3.90 -94.47 By element: Atomic # 1 Polarization: 29.95 SS G_CDS: -0.46 Total: 29.49 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 6.65 Total: 15.37 kcal Atomic # 7 Polarization: -110.49 SS G_CDS: -6.95 Total: -117.43 kcal Atomic # 8 Polarization: -86.41 SS G_CDS: -4.74 Total: -91.15 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: 24.42 SS G_CDS: -0.43 Total: 24.00 kcal Total: -90.57 -3.90 -94.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691372148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.489 kcal (2) G-P(sol) polarization free energy of solvation -90.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds